Orthologous Groups Search

Orthologous Groups among Arabidopsis, Brassica rapa, Brassica oleracea, and eight Brassica napus accessions.


     
Arabidopsis gene to search
(e.g., AT5G52390)
 
     
B. rapa gene to search
(e.g., BraA02g06253Z)
 
     
B. oleracea gene to search
(e.g., BolC2g08117H)
 
     
Rape ZS11 gene to search
(e.g., BnaA02G0145800ZS)
 
     
Rape Gangan gene to search
(e.g., BnaA02G0141200GG)
 
     
Rape Zheyou7 gene to search
(e.g., BnaA02G0169800ZY)
 
     
Rape Shengli gene to search
(e.g., BnaA02G0148400SL)
 
     
Rape Tapidor gene to search
(e.g., BnaA02G0109900TA)
 
     
Rape Quinta gene to search
(e.g., BnaA02G0145200QU)
 
     
Rape Westar gene to search
(e.g., BnaA04G0143400WE)
 
     
Rape No2127 gene to search
(e.g., BnaA04G0098900NO)
 
     

Orthologous Groups among Arabidopsis, Brassica rapa, Brassica oleracea, and eight Brassica napus accessions. You can do orthologous groups searches using for different species locus (AT5G52390/BraA02g06253Z/BnaA02G0145800ZS) by submitting your query in the search box above. A total of 1,009,733 representative peptide sequences from Arabidopsis (release 10), Brassica rapa (NP), Brassica oleracea (NP), and eight B. napus accessions (release 1.0) were used for identification of putative orthologous groups of each gene in Arabidopsis using OrthoMCL with default parameters. A total of 27,628 putative orthologous groups including in-paralogs were identified. The list of orthologous groups can be downloaded here.