alignments for Brassica napus v0 synteny

Brassica napus pan-genome Information Resource (BnPIR)

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Genesknowledge of genes in rape

Species1689 rapeseed accessions information

Gene expression~100 thousand genes expression level

Transposable elementsRape repeat database

Population variation~50 million varitations

NLR genes~three thousand NLRs
Gbrowse

Gbrowse syntenygenome synteny and gene index

ZS11genome browser for ZS11

Gangangenome browser for Gangan

Westargenome browser for Westar

Shengligenome browser for Shengli

Tapidorgenome browser for Tapidor

Zheyou7genome browser for Zheyou7

No2127genome browser for No2127

Quintagenome browser for Quinta
Tools

Gene indexfind colinear orthologous genes

Blastfind similiar genes or sequence

KEGG/GO enrichmentenrichment

Homologous regionsinteractive Homologous region viewer

OrthologousParalogs and Orthologous in Brassica

Phylogenetic Treephylogenetic analysis of 1688 accessions

Seq_fetchfetch sequence by location and name

Literature10 thousand related paper

Genome FactsSource and Facts
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Select a Region to Browse and a Reference species:

Examples: ZS11v0 scaffoldA01:1313357..1695625, no2127v0 no2127v0_A01:1..400000, ZS11v0 scaffoldA01:6383049..6614233, quintaAv0 quintaAv0_A01:2750331..2950330, ZS11v0 BnaA01G0075500ZS, Search by Gene name need to click this search button twice .

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Landmark:	Genome to Search:
Aligned Species: zheyou7 damor shengli westar quintaA no2127 tapidor ZS11 ganganF7
Display Mode : All species in one panel Click to show reference plus two species/panel

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Image options : Chain alignments on off Flip minus strand panels on off Grid lines on off Edges on off Shading on off

Version Bna202009, released September 10th, 2020.

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