Names & Information
Knowledge of BnaA02G0299900ZS:
| Gene Name | BnaA02G0299900ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: protein VARIATION IN COMPOUND TRIGGERED ROOT growth response-like isoform X2 [Brassica rapa] |
| Best Hit (SwissProt) | Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1 |
| NT seq | Len:3423 nt ATGTCTTCTTCACGCAATTGGGTGTTTGACGTCTTCCCTAGCTTCAGGGGGCTAGATGTCCGCAAAACATTCCTCAGTCA CTTTCTTAAGGAGCTGGATCTCAGATTGATCATTGCTTTCAAAGACAGTAAGATAGAAAGAAGCCAAGCGATCGAACCAG AGCTTCTACAGGCAATTAGGAGTTCAAGGATTGCGGTTGTCATGTTCTCGAAAAACTATGCTTCTTCCAAATGGTGCCTA GACGAGTTGCTGGAGATTGTGAAATGCAAACAGGAGCTAGAGCAGATTGTGATACCCGTTTTCTACGGGTTGGATCCTTC TGATATTAGAAAACAGTTGGGTGAGTTTGGTGAAGCTTTTGACAAGACTTGCAAGAACAGAACAGAGAGCAAGATACAGC TGTGGCGGCAAGCTTTAACCGATGTTGCAAATCTAGAAGGACATCATTCTCGAAACTGGGATAATGAAGCAAAAATGATT GAAGCGATCGTAGCTGATATTTTGGTTAAACTTAATTTAACTCCATCAAGGGATTTTGATGAGTTTGTCGGCATCAACGA TCATATTGCAAAGATGAGTGTATTGTTGAATGTAGAATCTGAGGAAGTGAGGATGGTTGGGATATGGGGTCCTTCGGGAA TTGGCAAGACTGCCATTGCAAGAGCTCTATTTGATAGGCTTTCACATCAATTCGAAGGTAGAATTTTCATTGATAGTGCG TTCATATCTAAGAATCTGGAAGATTATAGGAGAGCTAACTCTGATGATTACAACATGAAGTTGAGTTTGCAAGGAAAGTT CTTGTCTGAAATTTTAGGCTATGTGCACATAAAAATAGATCATCTTGGGGCTGCGAGAGATAGGCTTATGCACAGAAAAG TTCTTATCGTTATTGATGATTTGGATGATCAAGTGGTGGTAGAGGCCTTGGCTGGTGGAGATGATTGGTTTGGAATTGGG AGTAGAATCATTGTGGTTACAAAAGATAAACATCTTCTTGAGGCACATGGGATTGGTCATATTTACACGGTTGGTTTTCC ATCAGAAAAGCAAGCGCTTGAGATGTTCTGCCGATCAGCTTTTGTGCAAAACTATCCACCTGATGGTTTTGTGGATCTTG CTTCTAAAATAACCATGTGTGCTGGTGGTCTTCCTTTAGCTCTTCAGATTCTAGGTAAGGCTGTGAAAAGGAGGAACAAG GAGTATTGGACAGATATGTTATCGAGGCTTGGAAAAAGTCCAAACAGAGATATTGTAAAAGGGCTAAGAGTTAGTTATGA TGCGTTAGACAGCGAAGAAGATAAAGCAATATTTCGTCACATCGCATGTTTCTTCAATGGTATGGAAATTGATAGAATCA AACTGATGTTTGCAGATAGTGGGTTGAATGTTAATATAGGTCTTACAAACCTAGTTGATAAGTCCCTTATTAGTGTAAAA CCATCGTGGAATAATACAAATATTGTAGAGATGCATAGTTTGGTACAAGAGATAGGTAAAGAAGTTGTTCGTACACAGTC TAACAAGCCTGGAAAACGAGAGTTTCTTATGGATTCGAAGGATGTTTGCAATGTACTTGGAAGTTCCAAAGGGAGTGAAA TGGTTATAGGTATATCCATGAATTTAGATGAGATTAGTATGGTGAGGATACATGAGAATGCATTCGACGAGATGACTAAT CTCCGTTTTCTGAAATTCTATAAGAAGTCACTGGAGAGGAAGAAAGAAGTTAGATGGTTACTACCCGAAAGATTCGATAA TTTTCCGGACAAACTCAAGTTATTGAGTTGGCCGGGATGTCCAATGGTATACATGCCTTCTAGTTTCTGTCCTGAATATC TTGTTGAACTCATAATGCCTAACGCCAACCTCGTGAAGCTATGGGACGGAGTTGAGCCACTTACATGCCTTAAAGATATG GATTTGTCCAAGTCTGAAAACCTGAATGAAATCCCGGATCTTTCAACAGCTACCAATCTTGAGACATTGAATCTTCATGG TTGTTCAAGTTTGGTGGAGCTTCCTTCCTCTATTCGGAATCTCAATAAATTGACAGAGTTGAACATGCAAGGATGTGTAA ATCTGGACACCTTTCCCACCGGAATCGACCTCCAGTCTCTAAGTTCTCTTGATCTCAGTGGATGTTCACGGCTGCAAAGT TTTCCTTTGATCTCAAGTAACATTTCAAAGCTCAATCTAAGCCAAACAGCTATCGCAAAATACCCCTTTAAATTGCCTTT AGAGTCTCTCGTTGAACTTCACATGGAGCAAATCAAGAGTGAGAGATTTTGGGAAGGAGTTCAGCCTCTTACAAGCCTCA AGAAAATGGTGTTTTCAAGATGTGAAAACTTGAAAGAAATCCCAGATCTTTCAATGATGACTAAACTCGAGAAACTTGAT CTCAATGGTTGTTCTAGTTTGGTGGAGCTAACTCTTTCATCGATTCAAAATCTCAACAAACTCACGACTTTGGAAATGAT AGGATGCTCAAGTCTAGAGACTCTCCCAACCGGCATCAACTTAAAATCTCTCTATCGCCTCAATCTTAATGGATGCTCTC AGTTGAGAAGCTTCCCAGATATCTCAAGCAATATCTCAACTCTCTTTCTAAACCAAACAGCCATTGAAGAAGTTCCTCCG TGCATCGGAAACTTCTCTAGCCTTGAATCTATGGAGATGTGGGAATGCAAGCAGCTACAATCCATCTCACCAAAGGTTTT CAAACTTAGTAATCTTGAGGTTTACTTCTCAGACTGTGAGAAATTGACTGAAGTTAGATGGCCAGAGGAAGAAAAAGACA CCAATGATGCTGGCACCACCTTGTCATTAGTTATTTTCACCAACTGCTTCAATTTGAATCAAGAAGCATTCATTCAACAA TCAGCTTCCGAATATCTGATCTTACCAGGTGTAGAAGTGCCTCCATATTTTACTCACCGGTCTACCGCAAGCTCCCTTAC AATCCCTTTACATCGTTCAACTCTTAGTCAACAATCATTCTTGGACTTCAAGGCTTGTGTTGTGGTTTCCGAAGAAACGG TTAGCCATCTGCTGTTCTTTATAGACATTCAGGTACATTGCCGGTTTAGAGACCAGCACGGGAACTACTTTGAGCCTGAT AATCCAAGACATTTCTCCTTACATCAGAAATATAATCATCTGATTATATTTGACTGTCATTTCCCTCTAAACCAAGATTG CAATCAAGTTGAGATAGAGTTTCGCCTTTCTAGTATTCGACTCAAACTAAAAGGATGTGGTATAAGACTCTCAGATGACA ATACTCCCTCTTTGGCTTCTCCTATTGAAGTAGATGAAGAAGATATGGCTGATGATGGATGTCATGAGACTGAAGAATGT GCATATAGCGATATAGAGACGAAGAGAAGCAGAAAGCGAATTCGGGTAAGCATTCAGAAGTAA |
| AA seq | Len:1141 aa MSSSRNWVFDVFPSFRGLDVRKTFLSHFLKELDLRLIIAFKDSKIERSQAIEPELLQAIRSSRIAVVMFSKNYASSKWCL DELLEIVKCKQELEQIVIPVFYGLDPSDIRKQLGEFGEAFDKTCKNRTESKIQLWRQALTDVANLEGHHSRNWDNEAKMI EAIVADILVKLNLTPSRDFDEFVGINDHIAKMSVLLNVESEEVRMVGIWGPSGIGKTAIARALFDRLSHQFEGRIFIDSA FISKNLEDYRRANSDDYNMKLSLQGKFLSEILGYVHIKIDHLGAARDRLMHRKVLIVIDDLDDQVVVEALAGGDDWFGIG SRIIVVTKDKHLLEAHGIGHIYTVGFPSEKQALEMFCRSAFVQNYPPDGFVDLASKITMCAGGLPLALQILGKAVKRRNK EYWTDMLSRLGKSPNRDIVKGLRVSYDALDSEEDKAIFRHIACFFNGMEIDRIKLMFADSGLNVNIGLTNLVDKSLISVK PSWNNTNIVEMHSLVQEIGKEVVRTQSNKPGKREFLMDSKDVCNVLGSSKGSEMVIGISMNLDEISMVRIHENAFDEMTN LRFLKFYKKSLERKKEVRWLLPERFDNFPDKLKLLSWPGCPMVYMPSSFCPEYLVELIMPNANLVKLWDGVEPLTCLKDM DLSKSENLNEIPDLSTATNLETLNLHGCSSLVELPSSIRNLNKLTELNMQGCVNLDTFPTGIDLQSLSSLDLSGCSRLQS FPLISSNISKLNLSQTAIAKYPFKLPLESLVELHMEQIKSERFWEGVQPLTSLKKMVFSRCENLKEIPDLSMMTKLEKLD LNGCSSLVELTLSSIQNLNKLTTLEMIGCSSLETLPTGINLKSLYRLNLNGCSQLRSFPDISSNISTLFLNQTAIEEVPP CIGNFSSLESMEMWECKQLQSISPKVFKLSNLEVYFSDCEKLTEVRWPEEEKDTNDAGTTLSLVIFTNCFNLNQEAFIQQ SASEYLILPGVEVPPYFTHRSTASSLTIPLHRSTLSQQSFLDFKACVVVSEETVSHLLFFIDIQVHCRFRDQHGNYFEPD NPRHFSLHQKYNHLIIFDCHFPLNQDCNQVEIEFRLSSIRLKLKGCGIRLSDDNTPSLASPIEVDEEDMADDGCHETEEC AYSDIETKRSRKRIRVSIQK* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine rich repeats (6 copies) |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |