Names & Information
Knowledge of BnaA08G0201500NO:
| Gene Name | BnaA08G0201500NO |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: TMV resistance protein N-like [Brassica rapa] |
| Best Hit (SwissProt) | Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=2 |
| NT seq | Len:4911 nt ATGGTGGAGTCGTTAATACCCGGTTTGATGGACGACGTAGCAGAGCTGTGCCTTTCGAGAATCCCGCGCTCTAGCTTTCA GATCATTTCTCAGGTGTGCTCGCGATGGAGGAGATTCCTCAGGAGCGAGCGTTACGCGGCCGTTCGAAAGTTGACGGGAT CGGTGGAGGAGTTGATGTGTGTTCTACAGGATGACCAGTACTGTGAAGTTTTCGACTGCTCTGGTAACAAACTGGGACGG ATGCCTCCTGTCCCTGGGCTTTTGAAGAGCGGTTCCGGCCTTGCGACACTCGATGGCGGAAACATCGTGTTCATCGGTGG AAAATATCATGAGGGAGAATATGATAACGCTGCTTCGGCGGATGTTTACGAGTTCAATCCTGCTACTAACAGGTGGAGAA AACTGGCAGACATGAACATACCACGTTACAACTTTGGATATGCTGTAGTGGACGGCCTTTTGTATGTGATCCGAGGCTTT ACCTCATATGGTGATAAGCTTCTCAGCTTGGAAGTATACAACCCGAAAACTAACAAATGGAGCCTCATGGATTGTCCATA CCGGCCAACCTCTAGTTGTGCCTTCGCATTCTCCTTCAAATCCAAACTCTTCGTTGCAGACTCTGGATCGAGTTTCATTG ACATATATGACCCCAAAATGGAGACATGGGATCAGTTAGACTCGGGGCAAGAACTTTGGGTTTACTCCTGCGCTGTTATT AGGAACAAAGTGTATTTGTTGAAAATTTTCAATTCGGGAATGGGAGTGTTTGATCCAGAGAAGAATTCTTGGAGCTCAGT GTCTGTGCCTCCGTTCAATGGGCATGAGCTCATGTTCATACTAGGGCAAATGAACAATAAGGTTATCCTGGCTGCACAAG GTTTTCGGACACAGGGTCCTTTCGAGATGGATTTTGAAGAGCACTCGAAAAGATTTGGGGAGGAGGAGATACAACGATGG AGGGAAGCCATGAAAATAGTGGGGAATATCTCCGGATTTTTAAAAATGATCCTCCAATCGGAGATGGAGACTGACGTTAT GTCCAAGCCGCATAGGCTCAAGTTTGACGCCTTCCTCAGCTTCCGAGGCGAAGAGACGCGCCACAACATCACGAAGCGGA TCTACGACGCACTCAACGTGAAAGAAAAATTTCGTGTCTTTCGCGACAACGATGGTTTGGAAGGAGGAGGAGATGAGACC TCTCCAAACATCGTCGAAGCCATGAAGGACTCGGCGGCCTCCGTCGTCGTTAGCTATGCCCTGCATGTCCGTAATGTCTC TGAAACGCCTGAAAACTCGGTTGATGAGGACATGATAGAGCTTGTGGTGAAAAGCGTTTTAGCACAAGTGAGCAATACGC CCGAGAAAGTTGGAGAATACACGGTCGGGCTGGAATCACGTGTCGAGGACTTGATGAATCTGGTCGAGCTTAAACCCAGT TGTGACGATGTTCAAATCCTGGGACTTTATGGTATGGGTGGTATTGGTAAGACAACTCTTGCAAAAGCCTTCTATAACAA GATCATTGCAGAGTTCGAGCATAGAGTTTTCATCTCAAACGTTAGAGAAAACTCATCAGACCAAGATGGTTTAGTCAATT TACAAAAGAGTTTCATCAAGGCACTTCTCCGTTCGGTACCTGAAATAGAAGATGCTAACGGGGGCAGAGAAAAGATCAGA ACAAGTGTTCATGAGAAGAAGATTCTTGTGGTTTTAGATGATATTGATAATGTAGACCAGGTTGATGCGCTGGTTGGTGA AAAAAGTTGGTACGGTGAAGGAACTGTTATAGTCATCACAACCAGAGATGAAGAGATTCTGAGAAGGCTCTCTGTGAACC AAAAGTATGAGGTCAACTGCTTGACTGAGATGCAAGCACTGAAGCTGTTTAGTTATCATTCACTAGGAAAAGAAGAACCA ACAGAAAATCTAATGGAGTTGTCAAAGAAGATTGTCAAGATAACAGGACTCTTGCCATTGGCTATTGAAGTGTTTGGTTC GCATCTGTATGACAAGAAGGAACATGAATGGCTAACTGAACTAGAGAAGCTAAAAAGTACCCAACCAGGCGATCTTCAGG CTGTTCTGGCGCTGAGTTTCAAATCCTTAGACGATGAAGAGAAGACAGTCTTCCTCGACATTGCGTGTCTCTTCCTTAAA ATGGAGATAAAGAAAGAGGAAGTCATCGACGTACTGAAAGGTTGTGGGTTTAAAGCTGAGGCTGCTCTCAATGTGCTAAG ACAGAAGTCTCTTGTTAAGTTCTTGGCAGATGAAACTATTTGGATGCATGATCAGATTCGGGACATGGGTAGGCAGATAG ACCTTAAAGAACATCATGGGGACCTTGAAACTCGAGGTAGACTATGGGATCGTGGTGAAATCATGAATGTATTAAACTAC AAGAAGGGATCATCATCCATCCAAGGAATAGTATTGGACTTCAAAAAGAAGTTAGCTAGGGACCCAAGTGCACAGGACAT TGCATTGAGGACTCTACATGACAAGCCAGGCATAAGATCAGTGTTTAGTTACCTGAAGAATAAGTTTGTAAAGTTTCCAG CAGAGGAAAAGCCAAAAAGTTCTGAAATCACCATTCCTGTTGAGCATTTTGTACCAATGAAGAAGTTGAGACTTCTTCAG ATTAATCATGTGGAGCTTGAAGGAGATCTTAAGCTCCTTCCATCTGAACTCAAATGGATACAATGGAGAGGTTGCCCATT AAAGGATGTTCCACCAGTTTTTCTTGCTAGGCAACTTGCTGTTCTTGATCTTGCAGACAGTGGAATAAGACGAGTTCAGA GTTTGCACAGAAAAGAGATGGATGGGAACTTGAAGGTTGTAAATTTGCGTGGTTGCCATAGCTTAGAAGCTATTCCTGAT TTATCAAACCATAAATCCCTGGAGAAGCTTATTCTGGAACGATGCATGCTTCTGGTGAAGGTTCCTAGATCAGTTGGTAA TCTGAGTAAATTGCTTCAACTGGACTTCAGTTACTGTTCGAATCTTACCGAGTTTCTTGTGGATGTTTCTGGACTAAAGA GTCTTGAAAAGCTTTTCCTCTCTGGCTGTTCAAACCTGAGTGTCTTACCAGAAAACATTGGTGACATGCCATGTTTGAAA GAGCTTCTTCTTGGTGACACTGCCATAAAGAACTTACCAGAATCAATCTCCCGGCTTAAGAAACTTGTAAAGCTTAGTTT AAAGGGTTGCAGATCTATTCAAGAGCTACCTTTGTGCATAGGAATGTTGGCATCACTTGAAGAGCTAAATCTTACTGCCA CTGCATTGCAAAATCTCCCAAGTTCTATTGGAAAACTAAAAAATCTCCAGAAGCTTTATTTGATGCATTGTGCATCCCTT TCTAAGATACCTGACACAATCAATGAGCTCAAATCATTGAAGAAACTATTCATCAACGGAAGCGCAGTGGAGGAGCTACC TTTAAATCCTGGCTCACTGCCATCTTTGACTGACTTTTCAGCAGGAGGATGCAAACATCTGAAGCAGGTTCCGAGTTCCA TTGGTGGACTAAACTCTCTTCTTGATCTTGAGTTGGATTGGACTCCAATTGAAACTCTACCAAAAGAGATTGGGGACTTG TACTTTATTAGAAAACTTGTGTTGAGGAACTGCAAGTCTCTGAAGGTTCTGCCTGAGTCAATAGGAGACATGGACACACT CCATAGCTTATTCCTTGAAGGCTCCAACATTGAGAAACTGCCTGAAAGTTTTGGCAAGCTGGAGAACTTAGTCTTACTCC GAATGAACAACTGCAAAAAGATCAAGAGGCTTCCTGAGTCCTTTGGTGATTTGAAATCTCTTCACCATCTGTTCATGCAA GAATCTTTGGTAGTTGAGTTGCCAGAAAGCTTTGGAAAACTCTCTAAATTAATGACATTAAAAATGCTGAAGAAGCCTCT TTTTAGAAGCTGTGAGAGTGATTCTGAAACACCTAGCTTTGTAGAAGTACCAAACTCTTTCTCAAATCTCATGTCCCTTG AGGAACTGGATGCTCGCAGTTGGGGGATATCAGGTAAGATCCCAGATGTTCTTGGGAAGCTTTCATCTTTGAAGATACTT AAACTGGGGAATAACTATTTTCACAGTCTTCCGTCTAGCCTCGAGGGGTTATTGAATCTCAGAGAGCTTTCATTGTATGA TTGCCGAGAGCTAAAGTGTCTTCCTCCTGTTCCATGTAACTTGGAGCAGCTTAACCTAGCAAACTGCTTTTCATTGGAGA GTATTTCAGACCTTTCCAAGCTGAAGATCTTGCATGAACTCAATCTCACAAACTGTGAGAAAGTGGATGACATTCCAGGA CTAGAGCACTTGAAGGCTCTGGAACGATTATACATGAGCGGATGTAACTCCAAGTGCTCCTCTGAAGTAAAGAAAAGACT CTCCAAGGCTTCTTTGAAAATGATGGTGAATCTGAGCTTACCTGGAAACAGAATCCCAGTCTGGTTGTCACAAGGCCCTC TCAGATACACAACTCAGCCGAACAGAGAGCTCAGAGGCGTAATTTTAGCTGTTGTTGTGGCTCTTGAACAGGAATGCAAA GATGACTACCAGCTTCCTGATGTGGTGGAGGTTCAAGCCAAAATTCTAAAACTTGATCTAGCCTTATACACCCACACGTT GCACCTCTCTGGAGTGCCTAGAACAAGTGATGACCAACTCCACATCTGCAGATACCCAGCTATGCATCCAATGGTAACTA TGTTTAAAGACGGGTACACAATACAAGTCACCAAACGTGAACCACCAGTCAGACAAGGGGTTGAGCTAAAGATGCATGGG ATTCATCTGGTGTACGAAGGGGATGACGATTTTAAAGGTGAAGAGAGTGGCTTCACCGAGACACAGTTCACTGTTTCTCA GAAACTTGCCAAATTTTTTCAGCACTGTTGA |
| AA seq | Len:1637 aa MVESLIPGLMDDVAELCLSRIPRSSFQIISQVCSRWRRFLRSERYAAVRKLTGSVEELMCVLQDDQYCEVFDCSGNKLGR MPPVPGLLKSGSGLATLDGGNIVFIGGKYHEGEYDNAASADVYEFNPATNRWRKLADMNIPRYNFGYAVVDGLLYVIRGF TSYGDKLLSLEVYNPKTNKWSLMDCPYRPTSSCAFAFSFKSKLFVADSGSSFIDIYDPKMETWDQLDSGQELWVYSCAVI RNKVYLLKIFNSGMGVFDPEKNSWSSVSVPPFNGHELMFILGQMNNKVILAAQGFRTQGPFEMDFEEHSKRFGEEEIQRW REAMKIVGNISGFLKMILQSEMETDVMSKPHRLKFDAFLSFRGEETRHNITKRIYDALNVKEKFRVFRDNDGLEGGGDET SPNIVEAMKDSAASVVVSYALHVRNVSETPENSVDEDMIELVVKSVLAQVSNTPEKVGEYTVGLESRVEDLMNLVELKPS CDDVQILGLYGMGGIGKTTLAKAFYNKIIAEFEHRVFISNVRENSSDQDGLVNLQKSFIKALLRSVPEIEDANGGREKIR TSVHEKKILVVLDDIDNVDQVDALVGEKSWYGEGTVIVITTRDEEILRRLSVNQKYEVNCLTEMQALKLFSYHSLGKEEP TENLMELSKKIVKITGLLPLAIEVFGSHLYDKKEHEWLTELEKLKSTQPGDLQAVLALSFKSLDDEEKTVFLDIACLFLK MEIKKEEVIDVLKGCGFKAEAALNVLRQKSLVKFLADETIWMHDQIRDMGRQIDLKEHHGDLETRGRLWDRGEIMNVLNY KKGSSSIQGIVLDFKKKLARDPSAQDIALRTLHDKPGIRSVFSYLKNKFVKFPAEEKPKSSEITIPVEHFVPMKKLRLLQ INHVELEGDLKLLPSELKWIQWRGCPLKDVPPVFLARQLAVLDLADSGIRRVQSLHRKEMDGNLKVVNLRGCHSLEAIPD LSNHKSLEKLILERCMLLVKVPRSVGNLSKLLQLDFSYCSNLTEFLVDVSGLKSLEKLFLSGCSNLSVLPENIGDMPCLK ELLLGDTAIKNLPESISRLKKLVKLSLKGCRSIQELPLCIGMLASLEELNLTATALQNLPSSIGKLKNLQKLYLMHCASL SKIPDTINELKSLKKLFINGSAVEELPLNPGSLPSLTDFSAGGCKHLKQVPSSIGGLNSLLDLELDWTPIETLPKEIGDL YFIRKLVLRNCKSLKVLPESIGDMDTLHSLFLEGSNIEKLPESFGKLENLVLLRMNNCKKIKRLPESFGDLKSLHHLFMQ ESLVVELPESFGKLSKLMTLKMLKKPLFRSCESDSETPSFVEVPNSFSNLMSLEELDARSWGISGKIPDVLGKLSSLKIL KLGNNYFHSLPSSLEGLLNLRELSLYDCRELKCLPPVPCNLEQLNLANCFSLESISDLSKLKILHELNLTNCEKVDDIPG LEHLKALERLYMSGCNSKCSSEVKKRLSKASLKMMVNLSLPGNRIPVWLSQGPLRYTTQPNRELRGVILAVVVALEQECK DDYQLPDVVEVQAKILKLDLALYTHTLHLSGVPRTSDDQLHICRYPAMHPMVTMFKDGYTIQVTKREPPVRQGVELKMHG IHLVYEGDDDFKGEESGFTETQFTVSQKLAKFFQHC* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | Galactose oxidase, central domain |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |