Names & Information
Knowledge of BnaA08G0225200QU:
| Gene Name | BnaA08G0225200QU |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA08g20170D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:4122 nt ATGGAGGCTTCCGTTCTTTCGAAGCCGCCGCATAGGTACAAGCACGACGTCTTCCTCAGTTTCCGATCCGAAGAAGACGA CTTCTCAGAGCGTCTCCACAACGCGCTGAGAAAAGAGGTCCGTGTCTTCCGAAACGAAGGTATGGAGCAAGGAGGAGGGA CTGATGAGAACAACAAACGCCTCTTCAAAGCCATGGAGGACTCAGCTGCCTCCGTCGTCGTCTTCACCCAACACTACGCA GACTCTCGATCGTGCCTAGATGAGCTAGCTACGCTCTGCGATCTCGGAACGTCTCTGGATCGTCCCATTTTGCCGGTCTT TTACAAGGTCGATCCCTCTCATGTACGCAAACAGAGCGATCATTTCGAAAAGGATTTTGATGAACACAAGAAAATATTTA GCAAGGAAGAGGTACAGAGATGGAGAAAAGCTATGGAATTAGTTGGAAATCTAGCTGGATATGTTTACAAACACAGAGAA GGGACGGTTGATCAGGTTAAGGATGAGGATGACATGATAAAGCTTGTGGTGAAGAAGGTTTTAGCTCAAGTGAGCAACAC ACCTGAGAAAGTTGGAGAGTACACGGTCGGGCTGGAAACACGTGTGGAGGATTTGATGGATCTTGTGGACGTGAAATCCA CTGGTGACGTTCAAGTCCTTGGACTTCACGGTATGGGTGGTATTGGGAAGACTACACTTGCTAAACGCTTCTATAACCTG ATCCTCGAGAACTTTGAGGACCACCGATGTTTCATCTCTAACGTTAGACAAGAATCATCAGACGGCTTGCTCAATCTACA GAAGACTTTCATCAAGTCACTATTCGGTTCGGTACCTGAAATAGAAGATGTTAACAGTGGCCGGGACAAGATAAGAGGGA GAGTTCGTGAGAAGAAGATTCTTGCGGTTTTAGATGATGTTGATAACGTAGACCAGGTTGATGCGCTGGTTGGTGAAAGA AGTTGGTATGAGATTCTGAGTAAGCTCTCTGTGAGCCAAAAGTATGAGGTTAACTGCTTGACTGAGGTGCAGGCCTTGAA GCTGTTTAGTTTTCATTCACTACGGAAAGAAAAACAAACAGAGAAGCTGTTGGAGTTGTCAAAGAAGATTGTCAGGATAA CGGGGAAGTTGCCACTTGCTGTTGAAGTGTTTGGTTCCCATATGTACGACAAGAAGGAAGATGAGTGGCTAACTGAACTA GAGAAGCTGGAAAATACCCAACCAGGCGATCTCCAAAGTGTTCTGGCGCTGAGTTTCGAATCCTTGGGAGATGAAGAGAA GACAGTCTTCCTTGACATTGCCTGTCTCTTCCTTAAAATGGAGATAACGAAAGAAGAAGTCATGGACGTACTGAAAGGTT GTGGGCTTAACGCTGAGGCTGCTCTCACTGTCCTCAGACAGAAGTCTCTTGTTAAGTTATTGTCAGACAAAGACAATACT CTTTGGATGCATGATCAGATCAGAGACATGGGAATGCAGATGGTCCTTAATGAAAGCCGTGAGGATCCTGAAATGCGAAG TAGACTCTGGGATCGTGGTGAAATCATGAATGTATTAAACTATGTGAAGGGAACAACATCCATCCGAGGAATTGTATTAG ACTTCAAAAAGAAGTTTGTGAGTCATTCAACTGCAGTTGAAATAGGGTCGAGCAATCTACAAAACAATCAAGGCATCAGC TCTGCGGTTAGCTACGTGAAGAATATGTTTGTAAAGTTTCCAGAAGAGGAGAAGCCTAAAACTTCTGAAATAACCATCCC CATAGAGCCTTTTGCACCAATGAAGAAGCTGAGACTTCTTCAGATCAATCATGTGGAGCTTGAAGGAGATCTTAAGCTTC TCCCATCTGAACTCAAGTGGATACAATGGAGAGATTGCCCATTAAAAGACGTTCCACCGGTTTTTCTTTCTGGGCAACTT TCTGTTCTTGATCTTTCAGAGAGTGGAATAAGAAGAGTCCAGACTTTATGGTTCAAGAAGGAGGATGAGAACTTGAAGGT TGTAAATATGCGCGGCTGCCACAGCTTAGAAGCCATTCCTGATTTGTCAAACCACAAGGCCTTAGAGAAGCTTGTTTTCG AGAGATGCAAGCTTCTGGTGAAGGTTCCTAGTTCAGTTGGTAATCTAAGCAAATTGCTTCACCTGGACTTCAGTTACTGT ACAAATCTTACTGAGTTTCTTGTGGATGTTTCTAGACTGAAGCATCTTGAAAAACTCTTCCTCTCTGGCTGTTCAAATCT GAGTGTGTTGCCAGAAAACATCGGTGACATGACACGCTTGAAAGAGCTTCTTCTTGATGGAACTGCGATAAAGAACTTAC CAGAATCTATTGGTGGTGTTGAAAATCTTGAAAAGCTTAGTCTATACGGCTGCAGATCTTTTCAAGAGCTACCTAAGGGC GTGGGAAGATTGACATCACTGGAGGAGCTAGATCTTAGTGATACTGCATTACAAATCCTTCCGAGCTCTATTGGAGGACT AATAAATCTCAAGAAGCTGCATTTGATGCACTGCACATCCCTTACTAAGATTCCTGACACTATCAACAAGCTGACATCAT TGAAGGAGTTTTTCATCAATGGAAGTGGAGTGGAGGAGCTGCCTCTAAACGTTGGATCACTACAATCTTTGACTGAATTT TCAGCTGGAGGATGCAAATCACTGAAGCAGGTTCCGATTTCCATTGGTATGTTAAATAATCTCTTCCAACTTGAGTTGGA TCACACTCCAATTGTATCTCTACCAGAAGAGACCGGTGACCTGCGCTTCATTCAGAAACTTGAACTGAGGAACTGCAAGT CCCTCAAGTTTCTGCCTAAATCAATAGGAGGTATGGACACACTCCAAAGCTTATACCTTACAGGCTCTGACATTGAAGAA CTGCCTGAAGAATTCGGAAAACTCGAAAAACTAGTACTACTCCAAATGAACAAGTGTAAGAAGCTCAAGAGGCTTCCTAA CTCATTTGGAGACTTGAAGTCTCTTTATCATCTGTACATGGAGGAAACTTCGGTGGTGGAGTTGCCAGAAAGTTTTGGAA ACCTCTCTAAACTAATGACATTGAAAATGCTGAAGAGACCTCTCTTTAGAAGTGATACTCAAGGTAGTACAAAGAGTTTT GTAATACCAGACTCTTTCTCAAATCTCGAGTCCCTTGAGGAAGTGGATGCTCGTAGTTGGGGAGTCACTGGTAAAATCCC TGATGTTTTTGAGAAGCTTACATCTGTGAAGATACTCAACCTTGGGAATAATTATTTCCACAGTCTTCCTTCTAGCCTCA AGAAGTTAACAAATCTCAAAGAGCTTATATTGTATGACTGCCAAGAGCTCACCTGTCTTCCTCCTCTTCCATGTAACTTG GAGAAGCTTAACTTAGCAGACTGCTTGTCATTGGAGAGTGTATCCAACCTTTCGGAGCTGACGCTGTTGCAAGAACTCAA CCTCACAAACTGTAAGAAAGTGAATGATATTCCAGGACTAGAGCACTTGAAGGCTCTAAAACGGTTATACATGAGCGGCT GTAACTCCGATTGCTCCGCTTATGTAAAGGAAAGACTCTCCGACTCCAAGGCTTCTTTGAAAATGCTGAGGAACTTGAGC GTGCCTGGAGACAAAATCCCACACTGGTTCTCGCAAGGACCAGTCAGGTATATAGCTCAGCCGAACCGAGAGCTGAAAGG CGTAATCATTGCTGTTGTTGTGTCTGTTAGCCAACAAAGCAAAGATGACTTCCATGTCCCTGATGTGTTGGGGATTCAAG CCCAAATTCTCGAACTTGATAAAGTCTTGGTCAACCACACGTTGAACCTCACTGGAATGCCGAGAACAAGTGATGATCAG CTTCACATCTGCCGGTACTCGCAGAACTACCCAATGGTTTCGATGTTGAAAGAAGGGTACACCATACAGGTGATCAAACA GAAGATGTGGATCAAACAAGACGCTGACCTAAAGATGCATGGGATCCATCTGGTTTACGAGGGGGATGATGATTTGGGAG CCGAAGAAAGTGACTGTGTGACGGATCAGACAATGCAAACCGTTTCTCAGAAACTTGCCAACTTTTTCGGGCCTTGCAAA GACGGTGAAGCCAGCTCACAAGGTGGTTCTACTGTTACATGA |
| AA seq | Len:1374 aa MEASVLSKPPHRYKHDVFLSFRSEEDDFSERLHNALRKEVRVFRNEGMEQGGGTDENNKRLFKAMEDSAASVVVFTQHYA DSRSCLDELATLCDLGTSLDRPILPVFYKVDPSHVRKQSDHFEKDFDEHKKIFSKEEVQRWRKAMELVGNLAGYVYKHRE GTVDQVKDEDDMIKLVVKKVLAQVSNTPEKVGEYTVGLETRVEDLMDLVDVKSTGDVQVLGLHGMGGIGKTTLAKRFYNL ILENFEDHRCFISNVRQESSDGLLNLQKTFIKSLFGSVPEIEDVNSGRDKIRGRVREKKILAVLDDVDNVDQVDALVGER SWYEILSKLSVSQKYEVNCLTEVQALKLFSFHSLRKEKQTEKLLELSKKIVRITGKLPLAVEVFGSHMYDKKEDEWLTEL EKLENTQPGDLQSVLALSFESLGDEEKTVFLDIACLFLKMEITKEEVMDVLKGCGLNAEAALTVLRQKSLVKLLSDKDNT LWMHDQIRDMGMQMVLNESREDPEMRSRLWDRGEIMNVLNYVKGTTSIRGIVLDFKKKFVSHSTAVEIGSSNLQNNQGIS SAVSYVKNMFVKFPEEEKPKTSEITIPIEPFAPMKKLRLLQINHVELEGDLKLLPSELKWIQWRDCPLKDVPPVFLSGQL SVLDLSESGIRRVQTLWFKKEDENLKVVNMRGCHSLEAIPDLSNHKALEKLVFERCKLLVKVPSSVGNLSKLLHLDFSYC TNLTEFLVDVSRLKHLEKLFLSGCSNLSVLPENIGDMTRLKELLLDGTAIKNLPESIGGVENLEKLSLYGCRSFQELPKG VGRLTSLEELDLSDTALQILPSSIGGLINLKKLHLMHCTSLTKIPDTINKLTSLKEFFINGSGVEELPLNVGSLQSLTEF SAGGCKSLKQVPISIGMLNNLFQLELDHTPIVSLPEETGDLRFIQKLELRNCKSLKFLPKSIGGMDTLQSLYLTGSDIEE LPEEFGKLEKLVLLQMNKCKKLKRLPNSFGDLKSLYHLYMEETSVVELPESFGNLSKLMTLKMLKRPLFRSDTQGSTKSF VIPDSFSNLESLEEVDARSWGVTGKIPDVFEKLTSVKILNLGNNYFHSLPSSLKKLTNLKELILYDCQELTCLPPLPCNL EKLNLADCLSLESVSNLSELTLLQELNLTNCKKVNDIPGLEHLKALKRLYMSGCNSDCSAYVKERLSDSKASLKMLRNLS VPGDKIPHWFSQGPVRYIAQPNRELKGVIIAVVVSVSQQSKDDFHVPDVLGIQAQILELDKVLVNHTLNLTGMPRTSDDQ LHICRYSQNYPMVSMLKEGYTIQVIKQKMWIKQDADLKMHGIHLVYEGDDDLGAEESDCVTDQTMQTVSQKLANFFGPCK DGEASSQGGSTVT* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine rich repeats (6 copies) |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |