Names & Information
Knowledge of BnaA08G0233500ZS:
| Gene Name | BnaA08G0233500ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA08g20170D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3657 nt ATGGAGGCTTCCGTTCTTTCGAAGCCGCCGCATAGGTACAAGCACGACGTCTTCCTCAGTTTCCGATCCGAAGAAGACGA CTTCTCAGAGCGTCTCCACAACGCGCTGAGAAAAGAGGTCCGTGTCTTCCGAAACGAAGGTATGGAGCAAGGAGGAGGGA CTGATGAGAACAACAAACGCCTCTTCAAAGCCATGGAGGACTCAGCTGCCTCCGTCGTCGTCTTCACCCAACACTACGCA GACTCTCGATCGTGCCTAGATGAGCTAGCTACGCTCTGCGATCTCGGAACGTCTCTGGATCGTCCCATTTTGCCGATCTT TTACAAGGTCGATCCCTCTCATGTACGCAAACAGAACGATCATTTCAAGAAAGATTTTGATGAACACAAGAAAATATTTA GCAAGGAAGAGGTACAGAGATGGAGAAAAGCTATGGAATTAGTTGGAAATCTAGCTGGATATGTTTACAAACACAGAGAA GGGACGGTTGATCAGGTTAAGGATGAGGATGACATGATAAAGCTTGTGGTGAAGAAGGTTTTAGCTCAAGTGAGCAACAC ACCTGAGAAAGTTGGAGAGTACACGGTCGGGCTGGAAACACGTGTGGAGGATTTGATGGATCTTGTGGACGTGAAATCCA CTGGTGACGTTCAAGTCCTTGGACTTCACGGTATGGGTGGTATTGGGAAGACTACACTTGCTAAACGCTTCTATAACCTG ATCCTCGAGAACTTTGAGGACCACCGATGTTTCATCTCTAACGTTAGACAAGAATCATCAGACGGCTTGCTCAATCTACA GAAGACTTTCATCAAGTCACTATTCGGTTCGGTACCTGAAATAGAAGATGTTAACAGTGGCCGGGACAAGATAAGAGGGA GAGTTCGTGAGAAGAAGATTCTTGCGGTTTTAGATGATGTTGATAACGTAGACCAGGTTGATGCGCTGGTTGGTGAAAGA AGTTGGTATGGTAAAGGAAGTGTTATCATCATTACAACCAGAGATGAAGAGATTCTGAGTAGGCTCTCTGTGAGCCAAAA GTATGAGGTTAACTGCTTGACTGAGGTGCAGGCCTTGAAGCTGTTTAGTTTCCATTCACTACGGAAAGAAAAACCAACAG AGAAGCTGTTGGAGTTGTCAAAGAAGATTGTCAAGATAACGGGGAAGTTGCCACTTGCTGTTGAAGTGTTTGGTTCGCAT ATGTACGACAAGAAGGAAGATGAGTGGCTAACTGAACTAGAGAAGCTGGAAAATACCCAACCAGGCGATCTCCAAAGTGT TCTCGCGCTGAGTTTCAAATCTTTAGACGATGAAATGAAGACAGTCTTCCTCGACATTGCGTGTCTCTTCCTTAAAATGG AGATGGCCAAAGAGGAAGTCATGGACGTACTGAAAGGTTGTGGGCTTAACGCTGAGGCTGCTCTCACTGTCCTCAGACAG AAGTCTCTTGTTAAGGTATTGTCAGACAAAGACAATACTCTTTGGATGCATGATCAGATCAGAGACATGGGAATGCAGAT GGTCCTTAATGAAAGCCGTGAGGATCCTGAAATGAGAAGTAGACTCTGGGATCGTGGTGAAATCATGAATGTATTAAACT ACATGAAGGGAACAACATCCATCCGAGGAATTGTATTAGACTTCAAAAAGAAGTTTGTGAGGCATGCAACTGCAGTTGAA ATAGCATCGAGCAATCTACAAAACAATCCAGGCATCAGCTCTGCGGTTAGCTACGTGAAGAATATGTTTGTAAAGTTTCC AGAAGAGGAAAAGACTAAAACTTCTGAAATCACCATCCCCATAGAGCCTTTTGCACCAATGAAGAAGCTGAGACTTCTTC AGATCAATCATGTGGAGCTTGAAGGAGATCTTAAGCTTCTCCCATCTGAACTCAAGTGGATACAATGGAGAGATTGCCCA TTGAAAGACGTTCCATCTGTTTTTCTTTCTGGGCAACTAGCTGTTCTTGATCTTTCAGAGAGTGGAATAAGAAGAGTCCA GACTTTATGGTTCAAGAAGGAGGATGAGAACTTGAAGGTTGTAAATATGCGCGGCTGCCACAGCTTAGAAGCCATTCCTG ATTTGTCAAACCATAAGGCCTTAGAGAAGCTTGTTTTCGAGGGATGCAAGCTTCTGGTGAAGGTTCCTAGTTCAGTTGGC AATCTGAGTAAATTGCTTCACCTGGACTTCAGTTACTGTTCAAATCTTACTGAGATTCTTGCGGATGTTTCTAGACTGAA GCATCTTGAAAAACTCTTCCTCTCTGGCTGTTCAAATCTGAGTGTGTTGCCAGAAAACATCGGTGCCATGACATGCTTGA AAGAGCTTCTTCTTGATGGAACTGCGATAAAGAACTTACCAGAATCTATTGGTGGTCTTGAAAATCTTGAAAAGCTTAGT CTATTTGGCTGCAGATCTATTCAAGAGCTACCTGATGACCTGGATGCATTGACATCACTGGAGGAGCTAGATCTTAGTGA TACTGCACTGAAAACCCTTCCAAGCTCTATTGGAGGACTAATAAATCTCAAGAAGCTGCATTTGATGCACTGCACATCCC TTACTAAGATTCCTGACACTATCAACAAGCTAATATCATTGAAGGAGTTTTTCATCAATGGAAGTGGAGTGGAGGAGCTG CCTCTAAACCTTGGACCACTACAATCTTTGACTGAATTTTCAGCTGGAGGATGCAAATCACTGAAGCAGGTTCCGAGTTC CATTGGTATGTTAAATAATCTCTTCCAACTTGAGTTGGATCACACTCCAATAGTAACTCTACCAGAAGAGACCGGTGACC TGCGCTTTATTCAGAAACTTGAACTGAGGAACTGCAAGTCCCTCAAGTTTCTGCCTAAATCAATAGGAGGTATGGACACA CTCCAAAGCTTATACCTTACAGGCTCTGACATTGAAGAACTGCCTGAAGAATTCGGAAAACTCGAAAAACTAGTACTACT CCAAATGAACAAGTGTAAGAAGCTCAAGAGGCTTCCTAACTCATTTGGAGACTTGAAGTCTCTTTATCATCTGTACATGG AGGAAACTTCGGTGGTGGAGTTGCCAGAAAGTTTTGGAAACCTCTCTAAACTAATGACGTTGAAAATGCTGAAGAGACCT CTCTTTAGAAGTGATACTCAAGGTAGTACAAAGAGTTTTGTAATACCAGACTCTTTCTCAAATCTCGAGTCCCTTGAGGA AGTTGATGCTCGTAGTTGGGGAATCACTGGTAAAATCCCTGATGTTTTTGAGAAGCTTACATCTGTGAAGATACTCAACC TTGGGAATAATTATTTCCACAGTCTTCCTTCTAGCCTCAAGAAGTTAACAAATCTCAAAGAGCTTATATTGTATGACTGC CAAGAGCTCACCTGTCTTCCTCCTCTTCCTTGTAACTTGGAGAAGCTTAACTTAGCAGACTGCTTGTCATTGGAGAGTGT ATCCAACCTTTCGAAGCTGACGCTGTTGCAAGAACTCAACCTCACAAACTGTAAGAACGTGAATGATATTCCGGGACTAG AGCACTTGAAGGCTCTAAAACGGTTATACATGAGCGGCTGTAACTCCGATTGCTCCGCTTATGTAAAGGAAAGACTCTCC GACTCCAAGGTGATGATTCCCACACACTCCCTCAGAATCTCAACTACCTTAAACTAA |
| AA seq | Len:1219 aa MEASVLSKPPHRYKHDVFLSFRSEEDDFSERLHNALRKEVRVFRNEGMEQGGGTDENNKRLFKAMEDSAASVVVFTQHYA DSRSCLDELATLCDLGTSLDRPILPIFYKVDPSHVRKQNDHFKKDFDEHKKIFSKEEVQRWRKAMELVGNLAGYVYKHRE GTVDQVKDEDDMIKLVVKKVLAQVSNTPEKVGEYTVGLETRVEDLMDLVDVKSTGDVQVLGLHGMGGIGKTTLAKRFYNL ILENFEDHRCFISNVRQESSDGLLNLQKTFIKSLFGSVPEIEDVNSGRDKIRGRVREKKILAVLDDVDNVDQVDALVGER SWYGKGSVIIITTRDEEILSRLSVSQKYEVNCLTEVQALKLFSFHSLRKEKPTEKLLELSKKIVKITGKLPLAVEVFGSH MYDKKEDEWLTELEKLENTQPGDLQSVLALSFKSLDDEMKTVFLDIACLFLKMEMAKEEVMDVLKGCGLNAEAALTVLRQ KSLVKVLSDKDNTLWMHDQIRDMGMQMVLNESREDPEMRSRLWDRGEIMNVLNYMKGTTSIRGIVLDFKKKFVRHATAVE IASSNLQNNPGISSAVSYVKNMFVKFPEEEKTKTSEITIPIEPFAPMKKLRLLQINHVELEGDLKLLPSELKWIQWRDCP LKDVPSVFLSGQLAVLDLSESGIRRVQTLWFKKEDENLKVVNMRGCHSLEAIPDLSNHKALEKLVFEGCKLLVKVPSSVG NLSKLLHLDFSYCSNLTEILADVSRLKHLEKLFLSGCSNLSVLPENIGAMTCLKELLLDGTAIKNLPESIGGLENLEKLS LFGCRSIQELPDDLDALTSLEELDLSDTALKTLPSSIGGLINLKKLHLMHCTSLTKIPDTINKLISLKEFFINGSGVEEL PLNLGPLQSLTEFSAGGCKSLKQVPSSIGMLNNLFQLELDHTPIVTLPEETGDLRFIQKLELRNCKSLKFLPKSIGGMDT LQSLYLTGSDIEELPEEFGKLEKLVLLQMNKCKKLKRLPNSFGDLKSLYHLYMEETSVVELPESFGNLSKLMTLKMLKRP LFRSDTQGSTKSFVIPDSFSNLESLEEVDARSWGITGKIPDVFEKLTSVKILNLGNNYFHSLPSSLKKLTNLKELILYDC QELTCLPPLPCNLEKLNLADCLSLESVSNLSKLTLLQELNLTNCKNVNDIPGLEHLKALKRLYMSGCNSDCSAYVKERLS DSKVMIPTHSLRISTTLN* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | - |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |