Names & Information
Knowledge of BnaA09G0424300QU:
| Gene Name | BnaA09G0424300QU |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA09g29600D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3816 nt ATGATACCAATCTTCTACGAGGTTGATCCCTCTCATGTCCGTAAACAGAACGATCATTTCGCTAAGGACTTTGAAGTACA TGCTAAAAGGTTTAAGGAGGACAAGATACAGCGGTGGAGGAAAGCTATGACTTTGGTCGGAAACCTCTCTGGATTTGTTT GCAAAGAAGACTCTGTTGATGATGAGATGATAGGGCTTTTGGTGAAGAGGGTTTTATCTGAAGTGAGCAACACACCAGAG AACGTTGGAGATTACACCGTTGGCTTGGAGTCACGTGTTGATGATTTGATTAATCTGGTCGACGTTAAATCCACCTCTGA CGTTCAAATCCTGGGGCTTCACGGTATGGGTGGTATTGGGAAGACGACCCTTGCAAAAGCCTTTTATAACAAGATCGTTG CAGACTTCGAGTATAGAGTTTTCATCTCAAACGTTAGAGAAAGATCATCAGACCGTGACGGCTTACTCAATCTACAAAAG ACTTTGATCAAGGGGCTTCTCCGTTCGCTACCTGAAATAGAAGATGTTAACCGAGGGAGAGACAAGATAAGAGAGAGCGT TTATGAGAAGAAGATTCTTGTGGTTTTAGATGATGTTGATAAAAGAGACCAAGTTGATGCCTTAATTGGTGAGAGAAGTT GGTATAGTGAAGGAACTCTAATAGTCATCACTACCAGAGATGAAGAGATTCTTAATAGTCTCTCTGAGAGACAAAAATAT GAAGTCAGGTGCTTGAATGAGGAGCAGGCACTGAAGCTCTTTAGTTATCATTCACTACGGAAAGAAAAACCAACAGAGAG TTTACTAGAGCTGTCCAAGAAGATTGTCAAGATATCAGGTCTATTACCACTAGCACTTGAAGTGTTTGGATCTCTTTTGT ATGACAAGAAGGAGGCAAAAGAATGGCAAACTCAGCTAGAGAAGCTCAAAAACACTCAACCAGGCAATCTTCAGGATGTT CTGAAGCTGAGTTTTGATTCTTTAGACGATGAGGAGAAGAATGTGTTCCTGGATATTGCTTGTCTCTTTCTTAAAATGCA GATAAAGAAAGAAGAAATCGTCGACGTACTGAATGGTTGTGGGTTTAACGCCGAGGCTGCTCTCAGTGTCCTCAGACAGA AGTCTCTTGTTAAGTTCTTGTCAGACGAGAATCTTTGGATGCATGATCAGATTCGAGACATGGGAAGGCAGTTAGACCTT AAAGAAACCCCTGGGGATACTAGAATGCGGAGTAGACTCTGGGACCGTGCTGAAATCATGACTGTATTGAACAATATGAA GGGAACATCATCCATCCAAGGAATTGTACTCGACTTTAAAAAGAAGTTAGCAACGGATCCAAGTGCAGTTGCGTTGGGGA ATCTACATGACAATCCAGGCATCAGAACTGTGTTTAGTTACCTGAAGAATAAGTTTGTAGGATTTCCAGCAGAGGAAAAG CCAAAAAGCTCTGAGAACACCATTCCAGTAGAGCCTTTTGTACCAATGACAAAGTTGAGACTCCTTCAGATTAATCATGT GGAGCTGGCAGGGAATCTTGAACGTCTTCCATCTGAACTCAAGTGGATACAGTGGAGAGGCTGTCCATTAAAGGAGGTAC CACTGAATCTTCTTGCTCGGCAACTTGCTGTTCTTGATCTTGCAGAGAGTGCAATAAGGCGCATCCAGAGTCTGCACATC GAAGGGGTGGATGGAAACTTGAAGGTTGTAAACTTGCGTGGCTGTCACAGCTTAGAAGCCGTTCCTGATTTATCAAACCA TAAGTCCTTAGAGAAGCTTGTCTTTGAACGATGCATGCGTCTGGTGGAAGTTCCAAGTTCAGTTGGTAATTTGAGAACAT TACTTCACCTGGATTTCAGAAACTGTCCAAACCTCACTGAGTTTCTTGTGGATGTTTCTGGACTGAAGAGTCTTGAAAAG CTTTACCTCTCTGGCTGTTCAAATCTGAGTGTCTTACCAGAAAACATTGGTCTCATGCCATGTTTGAAAGAGCTTTTTCT TGATGCAACTGCGGTAAAGAAGTTACCAGACTCTATTTTTCGCCTCGAAAATCTTCAAAAGCTTAGCCTAAAGAGCTGCA GATCTATTCAAGAGCTTCCTATGTGCATAGGAACATTGACATCACTGGAAGAACTAGATCTGAGTAGCACTTCACTGCAA AGTCTTCCGAGTTCTATTGGAGATTTAAAAAATCTCCAGAAGCTGAGTTTGATGCACTGTGCATCCCTTCCAAAGATACC TGACACTATTAAGGAGCTCAAATCACTGAAGAAACTATTTATCTACGGAAGTGCAGTGGAGGAGCTGCCTCTAAGCCTAG GCTCACTGCCATGTTTGACTGACTTTTCAGCAGGAGAATGCAAACTTCTGAAGCATGTTCCAAGTTCAATTGGTGGATTA AATTCTCTTCTAGAACTTGAGTTGGATTGGACACCAATTGAAACTCTACCAGCAGAGATTGGTGACTTGCACTTTATTCA AAAACTTGGGTTGAGGAACTGCAAGTCTCTGAAGGCTCTGCCTGAATCAATAGGAAACATGGACACACTCCATAGCTTGT TCCTTACAGGCGCTAACATTGAGAAACTGCCTGAAACTTTTGGCAAGCTTGAAAACCTAGTCTCACTCCAAATGGACAAC TGTAAAATGATCAAGAGGCTTCCTGAATCATTTGGAGACTTGAAATCGCTTCACGGTCTGTACATGAAGGAAACTTCGGT GGTAGAGCTGCCAGAAAGTTTTGGAAACCTCTCGAATCTAAGGGTATTGAAGATACTGAAGAAGCCTCTCTTTAGAAGTT CTCCAGGTACAAGTGAAGAACCTAGTTTTGTTGAAGTACCGAACTCTTTCTCAAACCTCTTGTCACTTGAGGAGATAGAT GCTAGAGGTTGGGGGATATGGGGTAAAGTACCTGATGATCTTGGGAAGCTTTCATCTCTCAAGAAACTAGAACTGGAGAA TAACTATTTTCACAGTCTTCCATCTAGTCTTGAGGGGTTATGGAATCTTAAATTATTTACATTGTATGACTGCCAAGAGC TGAAGTGTCTCCCCCCTCTTCCGTGGAAACTGGAGAAGCTAAACCTGGCAAACTGCTTTGCGTTGGAGAGTATAGCAGAC CTCTCAAAGCTGGAGATCTTGGAAGAGCTCAATCTCACAAACTGTGGGAAAGTGGATGATGTTCCAGGCCTAGAGCATTT GAAGGCTCTGAAAAGGTTATACATGAGCGGCTGCAACTCTAGGTTCTCTGTTGCAGTCAAGAAAAGACTTTCCAAGGCTT CTTTGAAAATGATGAGGAATCTGAGCTTACCTGGGAACAGAATCCCTGACTGGTTCTCACAAGGCCCTCTCACATTCTCA CCTCAACCCAACAGAGAGCTCAGAGGCGTAATCCTGGCCGTTGTTGTGGCTCTTAACCAAGACTGCATAGATGACTACCA GCTGCCTGATGTGATGGAGGTTCAAGCACAAATTCTAGAACTTGATTCACCCTTATACACCCACACATTGCACCTCTCTG GAGTGCCAAGAACAAGTGATGATCAACTCCACATCTGCCGATACCCAACTTTGCACCCAATGGTTTGGACATTTAGAGAT GGGTACACCATACAAGTTGTTAAACGAGAACCACCAATCAAACAAGGCGTTGAGCTAAAGATGCATGGGATTCATCTTGT TTATGAAGGGGATGATGATTTTAAAGGTGAGGAACATGTATTGAACGAGACACAGCTCACTGTCTCTCAGAAGCTTGCCA ATTTTTTCAGATCTTTTGACGAAGGTGAAGCCAGCTCAGAAAGTGAATCAGCTTGA |
| AA seq | Len:1272 aa MIPIFYEVDPSHVRKQNDHFAKDFEVHAKRFKEDKIQRWRKAMTLVGNLSGFVCKEDSVDDEMIGLLVKRVLSEVSNTPE NVGDYTVGLESRVDDLINLVDVKSTSDVQILGLHGMGGIGKTTLAKAFYNKIVADFEYRVFISNVRERSSDRDGLLNLQK TLIKGLLRSLPEIEDVNRGRDKIRESVYEKKILVVLDDVDKRDQVDALIGERSWYSEGTLIVITTRDEEILNSLSERQKY EVRCLNEEQALKLFSYHSLRKEKPTESLLELSKKIVKISGLLPLALEVFGSLLYDKKEAKEWQTQLEKLKNTQPGNLQDV LKLSFDSLDDEEKNVFLDIACLFLKMQIKKEEIVDVLNGCGFNAEAALSVLRQKSLVKFLSDENLWMHDQIRDMGRQLDL KETPGDTRMRSRLWDRAEIMTVLNNMKGTSSIQGIVLDFKKKLATDPSAVALGNLHDNPGIRTVFSYLKNKFVGFPAEEK PKSSENTIPVEPFVPMTKLRLLQINHVELAGNLERLPSELKWIQWRGCPLKEVPLNLLARQLAVLDLAESAIRRIQSLHI EGVDGNLKVVNLRGCHSLEAVPDLSNHKSLEKLVFERCMRLVEVPSSVGNLRTLLHLDFRNCPNLTEFLVDVSGLKSLEK LYLSGCSNLSVLPENIGLMPCLKELFLDATAVKKLPDSIFRLENLQKLSLKSCRSIQELPMCIGTLTSLEELDLSSTSLQ SLPSSIGDLKNLQKLSLMHCASLPKIPDTIKELKSLKKLFIYGSAVEELPLSLGSLPCLTDFSAGECKLLKHVPSSIGGL NSLLELELDWTPIETLPAEIGDLHFIQKLGLRNCKSLKALPESIGNMDTLHSLFLTGANIEKLPETFGKLENLVSLQMDN CKMIKRLPESFGDLKSLHGLYMKETSVVELPESFGNLSNLRVLKILKKPLFRSSPGTSEEPSFVEVPNSFSNLLSLEEID ARGWGIWGKVPDDLGKLSSLKKLELENNYFHSLPSSLEGLWNLKLFTLYDCQELKCLPPLPWKLEKLNLANCFALESIAD LSKLEILEELNLTNCGKVDDVPGLEHLKALKRLYMSGCNSRFSVAVKKRLSKASLKMMRNLSLPGNRIPDWFSQGPLTFS PQPNRELRGVILAVVVALNQDCIDDYQLPDVMEVQAQILELDSPLYTHTLHLSGVPRTSDDQLHICRYPTLHPMVWTFRD GYTIQVVKREPPIKQGVELKMHGIHLVYEGDDDFKGEEHVLNETQLTVSQKLANFFRSFDEGEASSESESA* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | - |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |