Names & Information
Knowledge of BnaA09G0446700ZS:
| Gene Name | BnaA09G0446700ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA09g29600D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3630 nt ATGATAGGGCTTTTGGTGAAGAGGGTTTTATCTGAAGTGAGCAACACACCAGAGAACGTTGGAGATTACACCGTTGGCTT GGAGTCACGTGTTGATGATTTGATTAATCTGGTCGACGTTAAATCCACCTCTGACGTTCAAATCCTGGGGCTTCACGGTA TGGGTGGTATTGGGAAGACGACCCTTGCAAAAGCCTTTTATAACAAGATCGTTGCAGACTTCGAGTATAGAGTTTTCATC TCAAACGTTAGAGAAAGATCATCAGACCGTGACGGCTTACTCAATCTACAAAAGACTTTGATCAAGGGGCTTCTCCGTTC GCTACCTGAAATAGAAGATGTTAACCGAGGGAGAGACAAGATAAGAGAGAGCGTTTATGAGAAGAAGATTCTTGTGGTTT TAGATGATGTTGATAAAAGAGACCAAGTTGATGCCTTAATTGGTGAGAGAAGTTGGTATAGTGAAGGAACTCTAATAGTC ATCACTACCAGAGATGAAGAGATTCTTAATAGTCTCTCTGAGAGACAAAAATATGAAGTCAGGTGCTTGAATGAGGAGCA GGCACTGAAGCTCTTTAGTTATCATTCACTACGGAAAGAAAAACCAACAGAGAGTTTACTAGAGCTGTCCAAGAAGATTG TCAAGATATCAGGTCTATTACCACTAGCACTTGAAGTGTTTGGATCTCTTTTGTATGACAAGAAGGAGGCAAAAGAATGG CAAACTCAGCTAGAGAAGCTCAAAAACACTCAACCAGGCAATCTTCAGGATGTTCTGAAGCTGAGTTTTGATTCTTTAGA CGATGAGGAGAAGAATGTGTTCCTGGATATTGCTTGTCTCTTTCTTAAAATGCAGATAAAGAAAGAAGAAATCGTCGACG TACTGAATGGTTGTGGGTTTAACGCCGAGGCTGCTCTCAGTGTCCTCAGACAGAAGTCTCTTGTTAAGTTCTTGTCAGAC GAGAATCTTTGGATGCATGATCAGATTCGAGACATGGGAAGGCAGTTAGACCTTAAAGAAACCCCTGGGGATACTAGAAT GCGGAGTAGACTCTGGGACCGTGCTGAAATCATGACTGTATTGAACAATATGAAGGGAACATCATCCATCCAAGGAATTG TACTCGACTTTAAAAAGAAGTTAGCAACGGATCCAAGTGCAGTTGCGTTGGGGAATCTACATGACAATCCAGGCATCAGA ACTGTGTTTAGTTACCTGAAGAATAAGTTTGTAGGATTTCCAGCAGAGGAAAAGCCAAAAAGCTCTGAGAACACCATTCC AGTAGAGCCTTTTGTACCAATGACAAAGTTGAGACTCCTTCAGATTAATCATGTGGAGCTGGCAGGGAATCTTGAACGTC TTCCATCTGAACTCAAGTGGATACAGTGGAGAGGCTGTCCATTAAAGGAGGTACCACTGAATCTTCTTGCTCGGCAACTT GCTGTTCTTGATCTTGCAGAGAGTGCAATAAGGCGCATCCAGAGTCTGCACATCGAAGGGGTGGATGGAAACTTGAAGGT TGTAAACTTGCGTGGCTGTCACAGCTTAGAAGCCGTTCCTGATTTATCAAACCATAAGTCCTTAGAGAAGCTTGTCTTTG AACGATGCATGCGTCTGGTGGAAGTTCCAAGTTCAGTTGGTAATTTGAGAACATTACTTCACCTGGATTTCAGAAACTGT CCAAACCTCACTGAGTTTCTTGTGGATGTTTCTGGACTGAAGAGTCTTGAAAAGCTTTACCTCTCTGGCTGTTCAAATCT GAGTGTCTTACCAGAAAACATTGGTCTCATGCCATGTTTGAAAGAGCTTTTTCTTGATGCAACTGCGGTAAAGAAGTTAC CAGACTCTATTTTTCGCCTCGAAAATCTTCAAAAGCTTAGCCTAAAGAGCTGCAGATCTATTCAAGAGCTTCCTATGTGC ATAGGAACATTGACATCACTGGAAGAACTAGATCTGAGTAGCACTTCACTGCAAAGTCTTCCGAGTTCTATTGGAGATTT AAAAAATCTCCAGAAGCTGAGTTTGATGCACTGTGCATCCCTTCCAAAGATACCTGACACTATTAAGGAGCTCAAATCAC TGAAGAAACTATTTATCTACGGAAGTGCAGTGGAGGAGCTGCCTCTAAGCCTAGGCTCACTGCCATGTTTGACTGACTTT TCAGCAGGAGAATGCAAACTTCTGAAGCATGTTCCAAGTTCAATTGGTGGATTAAATTCTCTTCTAGAACTTGAGTTGGA TTGGACACCAATTGAAACTCTACCAGCAGAGATTGGTGACTTGCACTTTATTCAAAAACTTGGGTTGAGGAACTGCAAGT CTCTGAAGGCTCTGCCTGAATCAATAGGAAACATGGACACACTCCATAGCTTGTTCCTTACAGGCGCTAACATTGAGAAA CTGCCTGAAACTTTTGGCAAGCTTGAAAACCTAGTCTCACTCCAAATGGACAACTGTAAAATGATCAAGAGGCTTCCTGA ATCATTTGGAGACTTGAAATCGCTTCACGGTCTGTACATGAAGGAAACTTCGGTGGTAGAGCTGCCAGAAAGTTTTGGAA ACCTCTCGAATCTAAGGGTATTGAAGATACTGAAGAAGCCTCTCTTTAGAAGTTCTCCAGGTACAAGTGAAGAACCTAGT TTTGTTGAAGTACCGAACTCTTTCTCAAACCTCTTGTCACTTGAGGAGATAGATGCTAGAGGTTGGGGGATATGGGGTAA AGTACCTGATGATCTTGGGAAGCTTTCATCTCTCAAGAAACTAGAACTGGAGAATAACTATTTTCACAGTCTTCCATCTA GTCTTGAGGGGTTATGGAATCTTAAATTATTTACATTGTATGACTGCCAAGAGCTGAAGTGTCTCCCCCCTCTTCCGTGG AAACTGGAGAAGCTAAACCTGGCAAACTGCTTTGCGTTGGAGAGTATAGCAGACCTCTCAAAGCTGGAGATCTTGGAAGA GCTCAATCTCACAAACTGTGGGAAAGTGGATGATGTTCCAGGCCTAGAGCATTTGAAGGCTCTGAAAAGGTTATACATGA GCGGCTGCAACTCTAGGTTCTCTGTTGCAGTCAAGAAAAGACTTTCCAAGGCTTCTTTGAAAATGATGAGGAATCTGAGC TTACCTGGGAACAGAATCCCTGACTGGTTCTCACAAGGCCCTCTCACATTCTCACCTCAACCCAACAGAGAGCTCAGAGG CGTAATCCTGGCCGTTGTTGTGGCTCTTAACCAAGACTGCATAGATGACTACCAGCTGCCTGATGTGATGGAGGTTCAAG CACAAATTCTAGAACTTGATTCACCCTTATACACCCACACATTGCACCTCTCTGGAGTGCCAAGAACAAGTGATGATCAA CTCCACATCTGCCGATACCCAACTTTGCACCCAATGGTTTGGACATTTAGAGATGGGTACACCATACAAGTTGTTAAACG AGAACCACCAATCAAACAAGGCGTTGAGCTAAAGATGCATGGGATTCATCTTGTTTATGAAGGGGATGATGATTTTAAAG GTGAGGAACATGTATTGAACGAGACACAGCTCACTGTCTCTCAGAAGCTTGCCAATTTTTTCAGATCTTTTGACGAAGGT GAAGCCAGCTCAGAAAGTGAATCAGCTTGA |
| AA seq | Len:1210 aa MIGLLVKRVLSEVSNTPENVGDYTVGLESRVDDLINLVDVKSTSDVQILGLHGMGGIGKTTLAKAFYNKIVADFEYRVFI SNVRERSSDRDGLLNLQKTLIKGLLRSLPEIEDVNRGRDKIRESVYEKKILVVLDDVDKRDQVDALIGERSWYSEGTLIV ITTRDEEILNSLSERQKYEVRCLNEEQALKLFSYHSLRKEKPTESLLELSKKIVKISGLLPLALEVFGSLLYDKKEAKEW QTQLEKLKNTQPGNLQDVLKLSFDSLDDEEKNVFLDIACLFLKMQIKKEEIVDVLNGCGFNAEAALSVLRQKSLVKFLSD ENLWMHDQIRDMGRQLDLKETPGDTRMRSRLWDRAEIMTVLNNMKGTSSIQGIVLDFKKKLATDPSAVALGNLHDNPGIR TVFSYLKNKFVGFPAEEKPKSSENTIPVEPFVPMTKLRLLQINHVELAGNLERLPSELKWIQWRGCPLKEVPLNLLARQL AVLDLAESAIRRIQSLHIEGVDGNLKVVNLRGCHSLEAVPDLSNHKSLEKLVFERCMRLVEVPSSVGNLRTLLHLDFRNC PNLTEFLVDVSGLKSLEKLYLSGCSNLSVLPENIGLMPCLKELFLDATAVKKLPDSIFRLENLQKLSLKSCRSIQELPMC IGTLTSLEELDLSSTSLQSLPSSIGDLKNLQKLSLMHCASLPKIPDTIKELKSLKKLFIYGSAVEELPLSLGSLPCLTDF SAGECKLLKHVPSSIGGLNSLLELELDWTPIETLPAEIGDLHFIQKLGLRNCKSLKALPESIGNMDTLHSLFLTGANIEK LPETFGKLENLVSLQMDNCKMIKRLPESFGDLKSLHGLYMKETSVVELPESFGNLSNLRVLKILKKPLFRSSPGTSEEPS FVEVPNSFSNLLSLEEIDARGWGIWGKVPDDLGKLSSLKKLELENNYFHSLPSSLEGLWNLKLFTLYDCQELKCLPPLPW KLEKLNLANCFALESIADLSKLEILEELNLTNCGKVDDVPGLEHLKALKRLYMSGCNSRFSVAVKKRLSKASLKMMRNLS LPGNRIPDWFSQGPLTFSPQPNRELRGVILAVVVALNQDCIDDYQLPDVMEVQAQILELDSPLYTHTLHLSGVPRTSDDQ LHICRYPTLHPMVWTFRDGYTIQVVKREPPIKQGVELKMHGIHLVYEGDDDFKGEEHVLNETQLTVSQKLANFFRSFDEG EASSESESA* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | - |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |