Names & Information
Knowledge of BnaA09G0446800ZS:
| Gene Name | BnaA09G0446800ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA09g29610D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3339 nt ATGGAGGCTGCGGTTCTATCGAAGCCGCATAGGCTCAAGTATGATTTCTTCCTCAGTTTCCGAGGCGAAGACACGCGTCA TACCGTCGTAAAGCGTCTCTACGACGCTCTCCACGTGAAGGAGAAAGCGCTTATCTTCCGCGACAACGAAGGCATGGAAC GAGGGCAAGCGATCTATTCAAGCCTCGTCGCAGGCATAGAAGACTCTGCGGCCTCCCTCGTGGTCTTCTCCCCTCGCTAC GCTGACTCTCACTGGTGCCTTGATGAGTTAGCTACCCTATGCGATGTGAGTTCATCGCTTGATCGTCCCATGATACCGAT CTTTTACAAGGTCGATCCTTCCCATGTACGCAAACAGAGCGGTCGTTTCGTTGAGGACTTTGAAACACACGCCGAAAAAT TTAAGGACAAGGAGATAGAGATACAGCGATGGAGAGGAGCTATGAAAATAGTTGGAAATCTCCCTGGATTTATTTACAGA GAAGGAGAAAAGGAGGATGAGATGATAGGGCTTGTGGTGAAGAGGGTTTTAGCTGAGGAGAACAATACACCAGAGAAAGT TGGAGAGTACACCGTTGGCTTGGAGTCACGTGTTGATGATTTGATGAATCTGGTCAACGTTAAAATCCTGGGACTTTACG GTATGGGTGGTATTGGGAAAACGACCCTTGCAAAAGCCTTCTATAACAAGATCGTTGACAACTTCAAGGAGCAACGAGTT TTCATCTCAAATGTTAGAGAAAGATCGTCAGGACAAGATGGTTTGGTCAATCTACAAAAGACTTTCATTAGTGAACTGTT TGGTTTGGTACCTGAAATAGAAGATGTTAACCAAGGCCGAGACAAGATAAGAGAAAGTGTTCATGAGAAGAAGATTCTTG TTGTTTTAGATGATGTTGATAACGTAGACCAAGTTGATACCTTAATTGGTGAAAGAAGTTGGTATGGTGAAGGAACTCTT ATAGTCATCACGACCAGAGATGAAGAGATTCTGAATAGACTCTCTGTGAGCGGCCAAAAGTATGAGGTCAGTTGCTTGAG TAAGGAGCAGGCACTAAAGCTGTTTAGTTATCACTCACTACGAAAAGATAAACCACCAGGGAGTCTATTGCAGCTGTCCG AGAAGATCGTTGAGACAACAGGATTTTTGCCACTAGCTGTTGAAGTGTTTGGTTCTCTTCTGTATGACAAGAAGGAAGAA AAAGAATGGCTAGTTCAACTTGAGAAGCTTAAAAGTACTAAACTACACAATCTTCAGGGTGTTCTGAAGGTGAGCATTGA ATCCCTAGACGATGAAGAGAAGAAAGTATTCCTCGACACTGCGTGTCTCTTTCTTAAAATGGACATGACTAAAGAGGAAA TTGTCGACGTACTGAAAGGTTGTGGGTTCAACGCTGAGGCTGTTCTCAAAGCTCTTAGACAGAAGTCTCTTGTCAAGTTC TTGGCCGACAATACTCTTTGGATGCATGATCAGATTAAAGACATGGGAATGCAGATGGTCGTTAAAGAAAGCCCTGAGGA TCCGGGAAAGCGAAGTAGACTCTGGGATCGTGGTGAAATCATGAACAATATGAAGGGAACACCATCCATCAGAGGAATTG TATTAAACTTCAAGAAGAAGTCTATGAGACTAGATGACGATCCAGGCACCAGCTCTATATTAAAGCCTACAAGTACTGAA AACACCATTCCCGTGGAGCATTTTGTACCAATGAAGAAGCTGAGACTTCTTCAGATCAATCATGTGGAACTGCAAGGAAA TCTTGAACTCCTTCCATCTGACCTCAAGTGGATACAGTGGAGAGGCTGTCCATTAAAAGATGTTCCAGCGAGTTTTCTTT CTAGGCAACTCGCTGTTCTTGATCTTTCAGAGAGTGGTATAAGACGATTCCAGAGTTTCCAGCCAAAAATAGTGGGTTTG CAGGTGGAGGGGAACTTGAAGGTTGTAAATTTGCGTGGTTGTGATAGCTTAGAAGCCATTCCTGATTTATCAAACCATAA GTCCTTAGAGAAGCTTGTTTTCGAGGGATGCAAGCTTCTGGTGGAGGTTCCTAGCTCAGTTGGTAATTTGAGATCATTAC TTCACCTGGATTTAAGAAACTGTCCAAACCTCACTGAGTTTCTTGTGGATGTTTCTGGACTGAAGAGTCTTGAAAAGCTT TACCTCTCTGGCTGTTCAAGTCTGAGTGTGTTACCAGAAAACATCGGTTACATGCTGTGTTTGAAAGAGCTTCTTCTTGA TGAAACTGCGATAAAGAACCTACCGGGATCAATTTTTCGCCTCGAAAAACTTCAAAAGCTTAGCTTAAAGAGTTGCAGAT CTATTCACGAGCTTCCTGAGTGCATAGGAACATTGACATCACTGGAAGAGCTAGATCTGAGTAGCACTTCACTGCAAAGT CTTCCGAGTTCTATTGGAAATTTAAAAAATCTCCAGAAGCTGCATGTGATGCACTGTGCATCCCTTTCTAAGATACCTGA CACTATCAATAAACTCGCATCATTACAAGAGCTGATCATCGATGGAAGTGCGGTGGAGGAGCTACCTCTAAGTCTAAAAC CTGAATCCCTTTCTAAGATACCTGACACTATCAATAAACTCGCATCATTACAAGAGCTGATCATCGATGGAAGTGCGGTG GAGGAGCTACCTCTAAGTCTAAAACCTGTATCACTGCCATGTTTGGCTAAATTTTCAGCAGGAGGATGCAAATCGCTGAA ACAGGTTCCTAGTTCAGTTGGGTGGTTAAACTCTCTTCTCCAACTTAAGTTGGATAGTACACCGATTACAACTCTACCAG AAGAGATAAGTCAGTTGCGCTTTATTCAGAAAGTTGAGTTGAGGAACTGCTTATCATTGAAATCTCTGCCTAATAAGATT GGAGATATGGACACACTCCATAGCTTATACCTTGAAGGCTCTAACATTGAAGAACTGCCTGAAAATTTTGGAAATCTGGA GAACCTAGTATTACTCCAAATGAACAAGTGTAAGAATCTCAAGAAGCTTCCTAACTCATTTGGAGGCTTGAAATCTCTTT GCCATCTGTACATGGAGGAAACTCTGGTCATGGAGTTGCCAGAAAGTTTTGGAAACCTCTCAAATTTAAGGGTGTTGAAA ATGATGAAGAGTGATGATGATCCAGGTGCAAGAGAAAAATCTTGTTTTGTAATACCAAACTCTTTCTCAAATCTCTTGCT GCTTGAGGAGCTGGATGCTCATGGTTGTGGAATATCTGGTGAAGTCCCTGATGTTTTTGAGAAGCTTTCTTCTTTGAAGA TACTGAACTTGGGGAATAATAACGAGACGCAGACGTCTCTAGATCTGCTTCCACCATAA |
| AA seq | Len:1113 aa MEAAVLSKPHRLKYDFFLSFRGEDTRHTVVKRLYDALHVKEKALIFRDNEGMERGQAIYSSLVAGIEDSAASLVVFSPRY ADSHWCLDELATLCDVSSSLDRPMIPIFYKVDPSHVRKQSGRFVEDFETHAEKFKDKEIEIQRWRGAMKIVGNLPGFIYR EGEKEDEMIGLVVKRVLAEENNTPEKVGEYTVGLESRVDDLMNLVNVKILGLYGMGGIGKTTLAKAFYNKIVDNFKEQRV FISNVRERSSGQDGLVNLQKTFISELFGLVPEIEDVNQGRDKIRESVHEKKILVVLDDVDNVDQVDTLIGERSWYGEGTL IVITTRDEEILNRLSVSGQKYEVSCLSKEQALKLFSYHSLRKDKPPGSLLQLSEKIVETTGFLPLAVEVFGSLLYDKKEE KEWLVQLEKLKSTKLHNLQGVLKVSIESLDDEEKKVFLDTACLFLKMDMTKEEIVDVLKGCGFNAEAVLKALRQKSLVKF LADNTLWMHDQIKDMGMQMVVKESPEDPGKRSRLWDRGEIMNNMKGTPSIRGIVLNFKKKSMRLDDDPGTSSILKPTSTE NTIPVEHFVPMKKLRLLQINHVELQGNLELLPSDLKWIQWRGCPLKDVPASFLSRQLAVLDLSESGIRRFQSFQPKIVGL QVEGNLKVVNLRGCDSLEAIPDLSNHKSLEKLVFEGCKLLVEVPSSVGNLRSLLHLDLRNCPNLTEFLVDVSGLKSLEKL YLSGCSSLSVLPENIGYMLCLKELLLDETAIKNLPGSIFRLEKLQKLSLKSCRSIHELPECIGTLTSLEELDLSSTSLQS LPSSIGNLKNLQKLHVMHCASLSKIPDTINKLASLQELIIDGSAVEELPLSLKPESLSKIPDTINKLASLQELIIDGSAV EELPLSLKPVSLPCLAKFSAGGCKSLKQVPSSVGWLNSLLQLKLDSTPITTLPEEISQLRFIQKVELRNCLSLKSLPNKI GDMDTLHSLYLEGSNIEELPENFGNLENLVLLQMNKCKNLKKLPNSFGGLKSLCHLYMEETLVMELPESFGNLSNLRVLK MMKSDDDPGAREKSCFVIPNSFSNLLLLEELDAHGCGISGEVPDVFEKLSSLKILNLGNNNETQTSLDLLPP* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |