Names & Information
Knowledge of BnaC02G0034400NO:
| Gene Name | BnaC02G0034400NO |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N [Brassica rapa] |
| Best Hit (SwissProt) | TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 |
| NT seq | Len:3294 nt ATGGCCTCGGCGATTTATCCATCGCTCAGGCTAAGGCCCACCTTCTCCTCCGCCACGTCACTATCCTCCTCCTCTTCCTC GGGCGACATCAAACCCCGTCCCGCCGTCATTCTCCCGCTGCTAGTTTCAGTTGTGAATTGCATCACTTACAGCCTTACAG GTAAAGGATTGTCTTTGATTGGACACTCAGCTGGAGGATGGCTTGCTAGAGTTTACATGGAAGAATATGGAACCGCTGAT ATCTCCTTGTTGCTGACACTTGGTACGCCTCACTTACCACCACCGAGAGGACTATCAGGGGTTATTGATCAAACAAGAGG TCTTCTCTATTATGTTGAAGAGAATTGTGCATTAAGCGGAAAAATTCGGGAGCGGTGGACCTACGATGTGTTCTTAAACT TTCGTGGACCAGACATGCGCAATGGGTTCATGGGCCATCTCTATAAGAGTCTGGTAAGATCTGGGATATACGCATTCAAG GACGACGAAGAAATAGAAAGAGGAGAAGACATTTCCCCAAAGCTGTTGAAGGCCATTGAAAACTCCAAGATTCACCTTGT CGTTCTATCCCCGAACTATGCTTCATCGCGTTGGTGCCTTGATGAACTTGTACACATCATGCAATGCCTCGAAATGGAGT CCGGACATATGTTACTCCCAATTTTCTATGACGTTCACCCAGCAGATGTTCGCGTTCAAATAGGACCATTTGCTGAAGCC TTTGATAAACACCGAAGCCGTTACACAGAGAGCAAGACTATCGGACTCTGCGGGATGGGTGGGATCGGTAAAACGACCCT AGCCAAAGCTGCATATAATGAATACTCATATAGTTTCGAAGGAACAAGTTTCCTAGAAAACTTCGGAGAATACTTCAAGA AACCTCAAGGGAAGGTTCATCTTCAACAGAAACTTCTTTCTGATATCTTAAGGAGGCATGACATAGTCTTCAACAACATG GATCATGCAGTGAAACACAGATTCCGGAACAAAAGGGTACTTGTTGTACTCGATAATGTTGAAGACGTTAAGCAGCTTCA CTCAACCGCAATAGATTGGAGCTGCTTTGGGCCAGGAAGCAGGATAATCATCACAAGCAGAAACAAGCATTTGTTGGAGC AGCTCGGAGTAGTAAATATATACTCACCGGATGCACTTAACGGTAAAGAATCTCTTGAGCTCGTAAGCTGGCATTCCTTT AGAACAGAAAAACCTCCAGCAGATTTTCGGCAGCTCTCGGAAAAGTTGGTTGAATACTGTGGGGGACTACCCTTGGCTAT GGAAATCTTGGGTGCTTTTCTATTCAAGAGAAGCATTTCCGAGTGGAGAAGCACATTGGAATTGTTAAAACAAACTCCAA ATGCTGACATTCAAGCAAAACTTCAGATCAGCTTTGATGCCCTAGACCCAGAACAAAAAGATATATTCTTGGATATTTCT TGCTTCTTCATTGGGATGGATAAAGACTACGTGAATTGCATATTGGATGGATGCAAGTTATATCCTGACATAGGACTCAC TGTGTTGAAGGAAAGATTTCTTGTTACAGTCCGGGATAACAGGTTAGTGATGCATGGCTTACTACGAGAAATGGGAAGAA ATATTGTCCGGGGAACATCTCGGAATCACTGTGAAAGATGGAGTAGATTGTGGGATCCTGACGATGCTATTGATGTATTG GCAAACAATTCTGGTACTGATGCAATTGAAGGACTCAGCCTAAAGGTTAGAGCTACGGATGATGAGAACTTGGTGGCTGA AGCATTCTCAAATCTACGGAATCTGCGACTGTTACAACTCAGTCATGTACGGCTCAAGGGAAGCTATGAATATTTTCCAA GAGGTTTACGATGGTTTTGCTGGTTTGAGTATCCTCAACACTCTATCCCCTTAAAATTACATTTGGGAAGTGTAGTTGTC ATGGACTTGCAGTATAGAGCAACCTTAAACAGCTATGGTGAACTGGAATCCTTGACAACTCTGAAAGCCGATTTTACTGC TTTAAGGAAAATCCCCTCGTCGAGTAATCAACTGAAGAAACTGAAAGAGTTATCTCTTGATGGCTGCAAAGATTTATGGA AAGACAGAGACTACACTCATTCTGATGAAAGCCCTCAAGAGTCTCTACCTACCACTCTCTCATTAACCGGTTTAACCTGC CTAATGACTTTGCGTTTAGGTTCCTGCAATCTATCTGATGAATTAATTCCTGAAGATCTTGGGAGTTTGTCTTGCCTTGA GGAACTTGATCTCCAGGGCAACAACTTTCGTAATTTGCAAACGGATTTTGGTGGTCTTTTGAGTCTACAGATCCTCAAAT TAGATAGTTGCTCAGAACTTGAATCCTTGTTTAGTTTACCAAAAAAGTTGAGATCGTTTTATGCAAGCAACTGTATCATG TTGGAAAGAACTCCAGACTTATCAGGGTGCTTGGCGTTGCAATCTTTGCATCTCACAAATTGTTTCAACCTTGTTGAGAC CCCGGGGCTTGATACACTGAAAAGGGTTGGAGTCATCCATTTGGAAATGTGCAAGCGCATATCAGATACTTACAGAGAAA GAATCATGCAGAGATGGGCTGTGGATGGAAATGGGGGAATATTTGTCCTGGGATCAAGTCTTCCAAACTGGGTTAGCTTC AAGAATGAAAAGCATTCAATTTCTTTTACTGTGCCTAAATCTTTGAATCCTGATCTGGTTGGGTTTACCTTGTGGACACC ATATGTGAGTCAACAAAACGATGTGATGTCTGCATACTCTTCAAAGATTACATTGACGAATCAAACCAAAGGAGATGTAT GGAGTCTTCCAGCAACAGATCACATTCGTATGTACCGTGAAAAACACATCTGGCAAGGACATTTTTCAAATGAAGAGTTT AACTTACAAACAGGGGATCAAGTGGAAGTTTCTGTGGATTTTGGAGGCCAAATCGCCATTCTTGAGATAGGACTAAGTCT TGCTTACCGAGAAGAAGACACTGATTCATCAGACTCGGACACTTCAGAAGTTGGCCATGATGAGATCATTGATGAACAGT TGATACTAACGGAGGCGGCCGGTGGTGATGATGAACTTGTCATGGAAGAAACCCAAAGTAGACCTCGTAGGAAAATGGGA ATGGGTTTGAAGACACTTGTGGGCGCCTTTGGTTTGTTGACAATGACAGTCATTGTTGTTCTTGGAATACATAATGGAAT GCTGCGGCGCCAAAACCGCCTTCGCAGCATTGACGGTGGAAAGAATAAGGATGCAAGACTCAAGTTTTTCTCCCGCCAAG GTTTCTTGAACTAG |
| AA seq | Len:1098 aa MASAIYPSLRLRPTFSSATSLSSSSSSGDIKPRPAVILPLLVSVVNCITYSLTGKGLSLIGHSAGGWLARVYMEEYGTAD ISLLLTLGTPHLPPPRGLSGVIDQTRGLLYYVEENCALSGKIRERWTYDVFLNFRGPDMRNGFMGHLYKSLVRSGIYAFK DDEEIERGEDISPKLLKAIENSKIHLVVLSPNYASSRWCLDELVHIMQCLEMESGHMLLPIFYDVHPADVRVQIGPFAEA FDKHRSRYTESKTIGLCGMGGIGKTTLAKAAYNEYSYSFEGTSFLENFGEYFKKPQGKVHLQQKLLSDILRRHDIVFNNM DHAVKHRFRNKRVLVVLDNVEDVKQLHSTAIDWSCFGPGSRIIITSRNKHLLEQLGVVNIYSPDALNGKESLELVSWHSF RTEKPPADFRQLSEKLVEYCGGLPLAMEILGAFLFKRSISEWRSTLELLKQTPNADIQAKLQISFDALDPEQKDIFLDIS CFFIGMDKDYVNCILDGCKLYPDIGLTVLKERFLVTVRDNRLVMHGLLREMGRNIVRGTSRNHCERWSRLWDPDDAIDVL ANNSGTDAIEGLSLKVRATDDENLVAEAFSNLRNLRLLQLSHVRLKGSYEYFPRGLRWFCWFEYPQHSIPLKLHLGSVVV MDLQYRATLNSYGELESLTTLKADFTALRKIPSSSNQLKKLKELSLDGCKDLWKDRDYTHSDESPQESLPTTLSLTGLTC LMTLRLGSCNLSDELIPEDLGSLSCLEELDLQGNNFRNLQTDFGGLLSLQILKLDSCSELESLFSLPKKLRSFYASNCIM LERTPDLSGCLALQSLHLTNCFNLVETPGLDTLKRVGVIHLEMCKRISDTYRERIMQRWAVDGNGGIFVLGSSLPNWVSF KNEKHSISFTVPKSLNPDLVGFTLWTPYVSQQNDVMSAYSSKITLTNQTKGDVWSLPATDHIRMYREKHIWQGHFSNEEF NLQTGDQVEVSVDFGGQIAILEIGLSLAYREEDTDSSDSDTSEVGHDEIIDEQLILTEAAGGDDELVMEETQSRPRRKMG MGLKTLVGAFGLLTMTVIVVLGIHNGMLRRQNRLRSIDGGKNKDARLKFFSRQGFLN* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | PGAP1-like protein |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |