Names & Information
Knowledge of BnaC02G0049200ZS:
| Gene Name | BnaC02G0049200ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N [Brassica rapa] |
| Best Hit (SwissProt) | TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 |
| NT seq | Len:3468 nt ATGGGTGATTCCAGTGGACAAACTCGGGAGCGATGGAGCTACGATGTGTTCTTAAGTTTCCGTGGACCAGATGTGCGCAG CGGTTTCTTAAGCCATCTCTACAAGAGTCTAGTGAGATCTGGTATATACACATTCAAGGACGATAGAGAACTAGAGATAG GAGAAAGCATACCCCCGGAGCTGATGAAGGCCATTAAAAACTCCAAAATTTACGTTGTTGTTTTATCCGAGAGCTATGCT TCATCATCGTGGTGCCTTGATGAGCTCGTGCACATTATGCGGTGCTTGAAAAACGACCCCGGACACCTGGTATTCCCAGT TTTCTACAAAATTGAGCCGTCGCATGTACGCAGACAAAGTGGACCATTTGGTGAATCCTTTCATAAACACCGCATAATGT GCACGAGTCGAGAGAGCAAGTGGAAAGGGTATCAGTGGAGGAAAGCTTTGACCAGTATTGCAAATTTGAAAGGGTATCAC AGTAGTAATGGGGATAGTGATGCAGAATTGATCGACCAATTGACTAGAGACATTCTCCGAGTGTTGCCTAGTTCATACTT GCATTTACCAACATATGCCGTTGGTATTAGACCACGTGTAGGTCGTATCAAAGAGCTAATGTGCTTTGGTTTGGATGATG TTCAGATTATTGGAATCTGGGGAATGGCTGGGATTGGTAAAACAACGTTAGCCAAGGCTGCCTTTAACGAGTTCTCACAT CGTTTTGAAGGAAGAAGTTTCCTAGAAAACTTTAGAGATTACTTCAAGAGACCTGATGGGAAGCTTCATCTTCAGAAGAA GCTTCTTTCGGATATCTTAAGGAAGGATGAAGCTGCGTTCAACAACATGGATCATGCGGTGAAACAAAGATTTCGCAACA AAAGGGTACTTGTTGTAATTGATGATGTTGAAGACATAGTTCAGCTTCATTCTGTCGGAATATATTTGAGCTGTTTTGGT CCAGGAAGCAGGATAATCATTACAACCAAGAACAAGCATCTGTTAGAGCAGCTTGACGTAGAAAATATATATTCACCCAA GGAACTTAACGCTGATGAAGCTCTTGATCTTGTAAGCTGGCATGCCTTTAGAAGCAGTGAACCTCCTGAAGAGTTTCTCC AGTTCCCGAAAAGATTGGTTGAATACTGTGGAGGACTACCCTTGGCTATGGAAGTCTTGGGTGCTTTTCTCTACAAAAGA AGCGTTTCGGAGTGGAAAAGCACGTTGAAAGCGTTGAAAAGAATACCGGATGATAACATTCAAGCAAAGCTTCAGATCAG CTTTGATGCGCTAAACGCCTCACAGAAAGACATATTCTTGGATATATCTTGCTTCTTCATTGGGATGGATAAAGACTATG TAGATTGCATCTTGGATGGATGCGAATTAGAGCCTGTCGCAGGACTCAAGGTGTTAAAGGAGAGGTGTCTCATTACGATC CATGATAACAGCCTGATGATGCATGACTTACTACGAGACATGGGAAGATATATCGTCAAAGGAACATCTCTGAGGAACTG TGAGAGATGGAGTAGATTGTGGGACCGGGAACATGTTATAGATGTATTGGCAAACTATTCTGGAACAGATGAAACTGAAG GACTTAGCTTGAAGGCTGACGTTACGGCTGTTGAGAACTTTGAGGTTAAAGCATTTTCAAATCTACGTAAGCTGAGACTG TTACAGCTCTGTCATGTAGCACTCAACGGAAGCTATGAAAACTTTCCAAAAGGTTTACGATGGCTTTGCCGGCTTGGGTT TCCTGAGGAATCTTTCCCCATAAACTTACATTTGAGAAGTTTAGTTGTCATGGACATGCAGAAAAGCAACCTTAAACGAC TTTGGAGTGATCAGAAGCCTCATGAGTCCCTTAAGGAGTTAAAATACCTTGACCTCAGTCACTCTATCCAGCTTACAGAG ACTCCAGACTTCTCTTATCTCCCAAACCTTGAGAAGCTGTTCTTGATAAACTGTCAAAGATTGGCTAAAGTTCACGAGTC CATAAAGGTTCTTCAAGGAAGCCTGATTCTAATAAATCTGAGTGGTTGCATCAAGCTTGGTGAACTCCCGTTGGAACTCT ATACGTTGAAGTTGCTAGAAACCCTCATTCTCTCCGGATGCTCGCAGCTTGAGAGATTGGATGATGCTTTAGGTGAACTA GAGTCCTTGACAATTCTCAAAGCTGATTATACTGCTATAACGCAAATCCCTTCCTCGAGTGATCAACTTAAGAAGCTGAA AGAGTTATCTCTTCATGGCTGCAAGGAGTTATGGAAGCACAGACAGTACACCAACTCTGATGAAAGCTCTCAAGTGGCTC TGTTAAGCCCGCTCTCATTAAACGGTTTAATCTGCTTAAGGACTTTGCGTTTAGGTTCTTGCAATCTATCTGATGAGTTG GTTCCTGCAAATCTTGGGAGTTTGTCTTCTCTTGAGGAACTTGACCTTCAAGGCAACAACTTTCGTAACTTGCAAACGGA TTTTGCTGGTCTTCCAAGTCTACAGATTCTTAAATTGGATAATTGCTCAGAACTTCGATCCATGTTTAGTTTACCAAAGA AGTTGAGGTCTTTATACGCGAGAAACTGTACTGTGTTGGAAAGAACTCCAGACTTACTGGAGTGTTCGGTGTTGCAATCA CTGCACCTCACAAATTGTTACAATCTCGTTGAGACCCCAGGGCTGGAGGAACTGAAAACAGTTGGAGTCATCCACATGGA AATGTGCAACAATATACCTTATTCTGACAGAGAAAGAATCATGCAGGGATGGGCTGTTGGTGCCAATGGGGGAGTTTTTG TCCCGGGGTCGAGCATTCCAGAGTGGGTCAATTTCAAGAATGGGACACGTTCGATCTCTTTTACTGTCCCTGAACCAACT TTAAATTCTGTTCGGGTCGGGTTTACCGTGTGGACAACATACGTGAGTCAACAAGATGATGTGATGTCTGTATACATTCC AAAGATCACATTGAAGAATCAAACCAAGGGAGATGTGTGGAGCCGCAATCCAGCAACAGATCTCATTCGTATGTACCGTG AAAAACACATCTGGCAAGGGCACTTTTCAAATGAAGATTTCTTGTTAGAAACAAGGGATGAAGTGGAAGTTTCTGTGGAT TTTGGAGATAAAGTCGCCATTCTTGAGACAGGACTAACTCTTGCTTACAGGGAAGTCCCTGAAGTCCCAATTGAACAACT GACTGAAACAGGTGATGAAGTTGATAATGAACAACTGACTGAAACAGATGATGAAGTTGTCATTGATGAAAGCCAAAGAA GACCTCCCAGGAAAATGGGAATGGGTTTAAAGACACTTCTGGGGGCGTTTGGTTTGTTAGCATTCATTGTTGTTCTTGGA AAACATGGTAGACCCCTGCGCCGCCACAACCACCTCCGCAGGAATAAAGTTGAAAAGGATAAGGAGAAAAATGCCACACT CCCCATTTTCTCTTTTTTAGATTACTAG |
| AA seq | Len:1156 aa MGDSSGQTRERWSYDVFLSFRGPDVRSGFLSHLYKSLVRSGIYTFKDDRELEIGESIPPELMKAIKNSKIYVVVLSESYA SSSWCLDELVHIMRCLKNDPGHLVFPVFYKIEPSHVRRQSGPFGESFHKHRIMCTSRESKWKGYQWRKALTSIANLKGYH SSNGDSDAELIDQLTRDILRVLPSSYLHLPTYAVGIRPRVGRIKELMCFGLDDVQIIGIWGMAGIGKTTLAKAAFNEFSH RFEGRSFLENFRDYFKRPDGKLHLQKKLLSDILRKDEAAFNNMDHAVKQRFRNKRVLVVIDDVEDIVQLHSVGIYLSCFG PGSRIIITTKNKHLLEQLDVENIYSPKELNADEALDLVSWHAFRSSEPPEEFLQFPKRLVEYCGGLPLAMEVLGAFLYKR SVSEWKSTLKALKRIPDDNIQAKLQISFDALNASQKDIFLDISCFFIGMDKDYVDCILDGCELEPVAGLKVLKERCLITI HDNSLMMHDLLRDMGRYIVKGTSLRNCERWSRLWDREHVIDVLANYSGTDETEGLSLKADVTAVENFEVKAFSNLRKLRL LQLCHVALNGSYENFPKGLRWLCRLGFPEESFPINLHLRSLVVMDMQKSNLKRLWSDQKPHESLKELKYLDLSHSIQLTE TPDFSYLPNLEKLFLINCQRLAKVHESIKVLQGSLILINLSGCIKLGELPLELYTLKLLETLILSGCSQLERLDDALGEL ESLTILKADYTAITQIPSSSDQLKKLKELSLHGCKELWKHRQYTNSDESSQVALLSPLSLNGLICLRTLRLGSCNLSDEL VPANLGSLSSLEELDLQGNNFRNLQTDFAGLPSLQILKLDNCSELRSMFSLPKKLRSLYARNCTVLERTPDLLECSVLQS LHLTNCYNLVETPGLEELKTVGVIHMEMCNNIPYSDRERIMQGWAVGANGGVFVPGSSIPEWVNFKNGTRSISFTVPEPT LNSVRVGFTVWTTYVSQQDDVMSVYIPKITLKNQTKGDVWSRNPATDLIRMYREKHIWQGHFSNEDFLLETRDEVEVSVD FGDKVAILETGLTLAYREVPEVPIEQLTETGDEVDNEQLTETDDEVVIDESQRRPPRKMGMGLKTLLGAFGLLAFIVVLG KHGRPLRRHNHLRRNKVEKDKEKNATLPIFSFLDY* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine rich repeat |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |