Names & Information
Knowledge of BnaC02G0082400ZS:
| Gene Name | BnaC02G0082400ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC02g07390D [Brassica napus] |
| Best Hit (SwissProt) | Disease resistance protein TAO1 OS=Arabidopsis thaliana GN=TAO1 PE=3 SV=1 |
| NT seq | Len:3945 nt ATGGTTTCAAGCTGTCAGGAGAATCACTGGATGATAATAGAAACCTATAGAGAATCCATTGCTTCTTCTTCTTCAGCCAT CTGCAAAACGGACGTTTTCGTGAGTTTTAGAGGAGAAGATGTGCGCAAAACATTCGTGAGCCATCTATTCTGCGAACTTG ATAGGATGGGGATCAACGCGTTCAGAGACGACTTGGATCTTGAGAGAGGCAAGTCTATCTCCTCAGAGCTTGTAGATGCG ATCAAAGGATCAAGATTTGCAATCGTTGTGGTCTCTAGGAACTACGCATCTTCAAGCTGGTGCTTGGACGAGCTCTTAGA GATCATGGAGTGTAAGAACATGGTTGATCAGAAGACAATCATACCCGTTTTCTACGAGGTTGATCCATCGGATGTGAGAA GACAGACTGGGAGTTTCGGTGAGGGTGTTGAGAGTCACAGTGACAAGAGGAAGGTGAAGAAATGGAGAGAAGTTTTGACG CAGCTAGCTTCTATATCTAGTGAAGATTCTCGAGATGAGTCAAAGCTAGTTAAGAAGATTGTGAAAGACATTTCCGATAG ATTGGTTTCCACTTCACTGGGTGATTCAGATGAGTTGATTGGAATGAGTTCTCATATGGACTTTCTGCAGTCTATGATGT CTATAGAGGACGAAGATGTTAGAATGGTAGGGATTTGGGGAATGGGTGGAGTTGGGAAAACTACTATTGCTAAGCTTTTA TACAACGATCTCTCATCTCGATATCAAGCTCATTGCTTCATCGAGAATGTGAAGGAATTCAGTAACAGATATGGAGTTAG GCGTTTACAAGGAGAGTTTTTATGCAGAATGTTTGGAGAGAGAGATAAAGAAGCGTGGAGCTCGGTTTCCTGTTCGAGCC TGATAAAGGAAAGGTTCAGACATAAAAGGGTTTTGATTGTACTCGATGATGTAGATAGATCTGAGCAGCTGAATGAATTG GTTAAGGAGGCTGGTTGGTTTGGACCCGGAAGCAGAATCATTGTGACAACGCGAGATAGACATTTGCTAGATTCTCATGG CATAGATCTGATATATAAAGTTAAGTGCTTACACAAAAAGGAAGCTTTGCAGCTCTTTTGTAACTATGCTTTCAGAAATG AGATTATAGTTCCACATGAGTTTCTGGAGTTATCGGTTCAAGCTATAAACTATGCTTCTGGTCTTCCGCTGGCTTTAAGA GTTTTAGGTTCGTTCCTTTACCGAAGAAGCCAAAGAGAATGGGAAAGCACACTCGCTAGGCTTGAAACTTCTCCTCATAG TGATATCATGGAGGTTCTGAGAGTTAGCTACGACGGACTGGATGAGGAAGAGAAGGCTATTTTTCTCTACATATCATGTT TCTATAACATGAAGCATGTTGATTACGCCACAAGACTTCTGGATATTTGTGGATATGCCGCTGAAATTGGTATCACGGTT CTCACTGAGAAGTCTTTGGTAGTCATATCAAATGGATGCATAAAGATGCATGACTTGCTTGAACAGATGGGTAGAGAACT TGTACGCGAAAAAGCAGGTAACAAACCGGCTGAACGGTTTCTTTTATGGAGTCCTGAAGACATCTGTGATCTGCTGTTAG AAAATACTGGAACAAGTCTTGTTGAAGGAATGTCTCTGAACCTGTCTGAAGTATCTGAGGTATTGGCTAGTGATCAAGCT TTTGAGGGATTGTCTAATCTCAAGCTTCTCAACTTCTATGATCTTTCATATGATGGAGAGACTAGAGTGCATCTACCTAA TGGCCTCACTTATCTACCACGCAAGCTTCGCTATCTACGCTGGGATGGATACCCTTTAAACTCTTTGCCTTCAAGATTTC ATCCAGAGTTTCTTGTTGAACTTTGTATGAGTAATAGCCATCTCCACTACCTTTGGAATGGAATCCAGCCTCTTAGGAAA CTGAAGAAGATGGATCTTTCTCGTTGTAAATACCTAATCGAAGTTCCTGATCTCTCAAAAGCCACAAATCTTGAGGAACT AAACCTTTCCTATTGCCAAAGCTTAACTAAGGTTACTCCATCTATCAAAAATCTTCAGAACCTTTATTGTTTGTACTTGA CTAACTGCGTCCAACTGAAGAAGATACCAAGAGGAATCACTTTGCCGTCGCTTGAAACAGTTGGAATGAACGGATGCTCA AGCCTAATGCAGTTTCCAGAGTTTTCTTGGAATACCAGAAGACTCTATCTGAGCAGTACAAAGATAGAAGAACTGCCATC ATCGATGATCAGCCGTCTCTCTTGTCTGGTTGAGTTGGATATGTCGGATTGCCAGAGTATCAGGACTCTTCCAAGTTCTG TAAAGCACTTGGTGTCACTTAAATCACTGAGTTTGAACGGTTGCAAACATCTTGAGAACCTCCCAGAGTCATTACAGAAG CTCACACGTCTTGAAACTCTTGAAGTGTCTGGTTGCCTTAATATCAACGAGTTCCCTCGTGTTGCCAAGAATATAGAAGT TCTGCGTATGTCTGATACATCGATTGATGAAGTTCCTGCAAGAATCTGTGATCTCTCTCACCTTAGGTCTTTGGATATTT CAGGAAATAAAAGACTTCAATCTCTTCCTGTAAGCATTTCTGAGTTAACCTCACTTGAAAAGCTCAAGCTTTCTGGCTGT TCTGTACTTGAGAGCCTTCCGCCAGAGATTTGTCAGACAATGAGCTGCTTGAGGTGGCTTGATTTGGAAAAGACCAGCAT CAAAGAACTGCCTGAAAACATTGGTAGTTTGATAGCTCTCGAGGTGATTCAAGCTAGAAGAACTGCAATAAGACGAGCAC CATGGTCAATTGGGCGACTTAACCGTCTGCAAGTTTTAGCAATTGGGAATAGCTTCTACACCTCAGAAGGTCTGCACTCT CTTTGTCCTCACTTATCAAGGTTTGATGACTTGAGAGCTCTGTGCCTAAGCAACATGAACATGATAGAGATCCCCAACAG TATTGGTAACTTGTGGAGTCTATCAGAACTAGATTTGAGTGGTAACAACTTTGAACACATCCCTGCGAGCATCAAACGAC TCACCAGGTTGAACAAACTGGATGTAAACAACTGCCAGAGACTTCAAGCACTGCCTGATGAGCTTCCACGAGGTCTCTTG TATATCTACGCACATGGCTGCACATCCCTAACGAGTATCTCAGGCTGCTTCAAGCCTTGTTGTCTGCGCAAGCTTGTAGC GAGCAACTGTTACAAACTGGATCAAGAGGCACAGAATCTCATCCACCGGAACATGAAGCTAGATGCAGCAAAACCAGAAC ACTCTTATTTTCCTGGAAGAGATGTGCCTTATTGCTTCAATCACCAAGCCATGGGATCTTCCTTGAGAATACACTTGCCT CAGAGTCAATCATCATCTGACATTCTAGGTTTTTCCGCTTGCGTAATGATTGGAGTTGATGGACAGTACTCAATGAACGA TCTCAAGATACGCTGTTCTTGCATTTTAAAAAGGGTTGATGATGCTCAAGAGCTGGTTGTTATGGATGAGCTATGGTATC CTGATCCAAAAGCTTTCGCAAACATGAGTTTTGGATCAGATCATCTTCTCTTGTTCAACAGAAGTTGCATGTCCATGGGA TCTTACAACGAAGTCTTCTTTGAATTTTCAATCGAAAACACAGGAGACTCTTCCAACCCTCTGGTAGAGGTTAAAAAGTC TGCAGTGCACCTCATTACGTTTAAAGACATGTTACAAGAGCATGATAGCTCATCCTCACAACAGTTCTCTAATGACAACA ATGAGAACATTCATGATCCTGATTTGGAGCTTTCAGAAGCATCAGATGAAGCAGAGGTTCCGAGAAGAAGACTATATGGA AATGATTTCTTGCAGAAGGAGCAACCAAATCACAAAAGGATAAAGCTTCTCCCTGTTCCTTCAGCTCGAAAGCGACATTC CAAATCACATCAACTGAATGAATGA |
| AA seq | Len:1315 aa MVSSCQENHWMIIETYRESIASSSSAICKTDVFVSFRGEDVRKTFVSHLFCELDRMGINAFRDDLDLERGKSISSELVDA IKGSRFAIVVVSRNYASSSWCLDELLEIMECKNMVDQKTIIPVFYEVDPSDVRRQTGSFGEGVESHSDKRKVKKWREVLT QLASISSEDSRDESKLVKKIVKDISDRLVSTSLGDSDELIGMSSHMDFLQSMMSIEDEDVRMVGIWGMGGVGKTTIAKLL YNDLSSRYQAHCFIENVKEFSNRYGVRRLQGEFLCRMFGERDKEAWSSVSCSSLIKERFRHKRVLIVLDDVDRSEQLNEL VKEAGWFGPGSRIIVTTRDRHLLDSHGIDLIYKVKCLHKKEALQLFCNYAFRNEIIVPHEFLELSVQAINYASGLPLALR VLGSFLYRRSQREWESTLARLETSPHSDIMEVLRVSYDGLDEEEKAIFLYISCFYNMKHVDYATRLLDICGYAAEIGITV LTEKSLVVISNGCIKMHDLLEQMGRELVREKAGNKPAERFLLWSPEDICDLLLENTGTSLVEGMSLNLSEVSEVLASDQA FEGLSNLKLLNFYDLSYDGETRVHLPNGLTYLPRKLRYLRWDGYPLNSLPSRFHPEFLVELCMSNSHLHYLWNGIQPLRK LKKMDLSRCKYLIEVPDLSKATNLEELNLSYCQSLTKVTPSIKNLQNLYCLYLTNCVQLKKIPRGITLPSLETVGMNGCS SLMQFPEFSWNTRRLYLSSTKIEELPSSMISRLSCLVELDMSDCQSIRTLPSSVKHLVSLKSLSLNGCKHLENLPESLQK LTRLETLEVSGCLNINEFPRVAKNIEVLRMSDTSIDEVPARICDLSHLRSLDISGNKRLQSLPVSISELTSLEKLKLSGC SVLESLPPEICQTMSCLRWLDLEKTSIKELPENIGSLIALEVIQARRTAIRRAPWSIGRLNRLQVLAIGNSFYTSEGLHS LCPHLSRFDDLRALCLSNMNMIEIPNSIGNLWSLSELDLSGNNFEHIPASIKRLTRLNKLDVNNCQRLQALPDELPRGLL YIYAHGCTSLTSISGCFKPCCLRKLVASNCYKLDQEAQNLIHRNMKLDAAKPEHSYFPGRDVPYCFNHQAMGSSLRIHLP QSQSSSDILGFSACVMIGVDGQYSMNDLKIRCSCILKRVDDAQELVVMDELWYPDPKAFANMSFGSDHLLLFNRSCMSMG SYNEVFFEFSIENTGDSSNPLVEVKKSAVHLITFKDMLQEHDSSSSQQFSNDNNENIHDPDLELSEASDEAEVPRRRLYG NDFLQKEQPNHKRIKLLPVPSARKRHSKSHQLNE* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | hypothetical protein; K19613 leucine-rich repeat protein SHOC2 (A) |