Names & Information
Knowledge of BnaC02G0408300ZS:
| Gene Name | BnaC02G0408300ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: protein VARIATION IN COMPOUND TRIGGERED ROOT growth response-like isoform X2 [Camelina sativa] |
| Best Hit (SwissProt) | Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1 |
| NT seq | Len:3492 nt ATGGAAACAATTACGACTGCTAAACTGTGGGAAGGAATGCAGCCGTGGACATCTCTCATAACAGTACTGTCTTTTTCCTT AAAGAAGTTGTGGCTCTCGGGTAGCCCATGTTTGATGGAGATTCCTTCGTCGTTACAGAATCTATATGGACTCGTGGAGC TGAGCATTAGGAACTGCACAAATTTGGAGATTCTTCCCAATGAAATCAACCTTAAATTTCTGGATCAGCTTGATCTCAGT GGTTGTTCACAGCTGAGGAGTTTTCCTGATATCTCAACCAACATCTCAATCCTTATTTTATGCCGCACAGCAATTGAAGA GGTTCCATGCTGGATCGAAAATTTCTCTCGCATCAATTACATTCGCATGACTGGGTGCAACAATTTACATTGTGTATCCG TGAATATATATAAACTTATACATCTTGAGACGGTTGACTTTTCAAACTGCGAGGTACTGACTGAAGCTAGGTTAGATGGG AGTCCAGATAAGCAGAAAATGACAACGGACAATATTAACTCTAAGCTACCAGATGATTATGTCCCTAAAGTCATGATTAG TCTAATCAACTGCTTCAGGTTGGATCAAGAAATTCTCTATCACAAACAAGCGGTTTTCTTCAAGTCCATAGAGTTGCCAG GTGAGGAAGTGCCTTCATATTTCACTCGCCGTACTACTGGAAACTCACTGACTATCCCACTACTACGCACCTCTCCCTCT CAACCAGTGTTAAGATTCAGAGCTTGTGCAGTCGTTAATTCTATACCTATTTCGAAAGTAACAAGGTTGGATTGTCATAT GGTTATATTTGATTGTTGCTTCCCTCTGAATGAAGACAACGCTCGCCTAGCTGAAGTTAACCACTATCAGGTGGAAATCC AGTTTCGTCTCATAAGTGATTACCCTCAATTCAAATTAAAAGCATTTGGTATACTACTCCTCGAAGAATATGGAGACAGC GCTGTAGAGATGTCGGCTTCACGCAATTGGGTATATGATCTCTTCCCAAGCTTCCGGGGGGAAGACGTCCGGAAAAAATT CCTTAGCCACTTTCTCAAGGAGCTTGACCGGAAAATGATCAATGCTTTCAAAGACAACGAGATCGAGAGAAGCCAGTCCA TATGGCCTGAGCTTGTACAAGCGATTAGGGATTCTAGGATCATGGTGGTAGTGTTCTCCGAAACATATGCCTCTTCAAGT TGGTGCCTTAATAAGTTGCTGGAGATCGTGACATGCAAGGAAGAGTTTGGTCGTTTGGTGATTCCCATTTTCTACCATGT GGATCCTTCCCACAAAGCGTTGACTGATGTAGCGAATATGGGAGGATATGATTCTCAAAACTGGGAAAGCGACGCTACAA TGATTGAAGACATCACCAATGATGTTTTCCGTAAACTACTTTCAACTACATCGAAGGAGTGTGAGGATCTTGTTGGCATT GAAGATCATATCGCAGAGATAAGTACATTGTTACGTTTGGAGTCTGAGGAAGTCAGGATGCTTGGTATATGGGGTTCCTC TGGAATTGGCAAGACTACCATCGCAAGAGCTCTGCTGAACCGATTTTCTTCAAGGTTTCAACGAAGCATCTTTATAGACA TGGCTTTCGTATCTAAGAGTAAGAACTTGTATCCTAGTGCAAATGCGGACGACTACAACCTGAAGTCGCATTTACGGAAA GAATTTCTATCTGAGATTTTGGGCGAAAAGGACACTAAGAAAGAGCATGTGGGTGCACTGGAAGAGAGGCTAAAACACCG AAAAGTTCTTATCATTATTGATGATTTGGATGATCCAATGGTGCTAGATGCCTTGGTTAGTCAAAATCATAGGTTTGGAC GTGGGAGCACAATCATCATGGTCACAAAAGATAAGCATCTCTTAAGGGCACGCAAGGTTGATTGTATTTACGAGGTTGTT CTCCCATCTAAAGACCTTTCTCTTAAGATGTTATGTCGATATGCTTTCAGTAAAGATTCTCCACCTGATGGTTTGATGGA ACTTGCTTCTGAAGTTGCACTGCTTGCCGGTAATCTTCCTCTGGGTCTTAAAGTTTCAGGTTCACATTTACAAGGTAGGA ATAAAGAGGACTGTATTGATATGTTACTGAGGCTCCGAAGTGGCTTGGATGGACGAATTGGGAAAACAATGAGAGTCAGC TACGATGGGTTAAATAACAGAAAAGATAAAGCAATATTTCGTCATATTGCATGCTTTTTCAACGGTGCACATATCAATGA CATCAAAGAGCTTCTAGCAAATAGTGACTTCGATATCAATATCGGGCTAGTCAACCTCATCGATAAGTCCCTGATACAGG TAAGATCGGGTAATGTAGAGATGCACTGTTTGCTACAAGAAATGGGTAAGGAAATTGTCCGCGCAGAGTCCAATGATCCT GGAGAACGAGAATTCCTTGTGGATTCAAAAGACATTTGCTATGTGCTTAGTAATGCCACTATACTTCGTCTCAACAACTG CTCGAGTTTGGTGGAGCTTCCCTCCACTATCCAGTATCTCAATAATCTGGAGGAGTTGAACATGCAGTTCTGCAAAAACC TAGAGATTCTTCCAAAAGGTGTCAATCTTGAATCTCTAGATCACCTTGATCTTAGTGGATGCTCACGGTTGAAGAGTTTT CCTGATATCTCAACCAACATCTCATTTTTGAATATAAGCCAAACAGCGATTGAAGGAATTCCCACAAATTTGCATTTTGA TAATCTCGTTAAACTTTTCATGTATGACATGATGAGTGTTCAACTATGGGAAGGAATGCAGCCGCTTACACCCCTCATGA CCATGCTGCCTCCCACTTTGGAAATACTGGATCTCTCGGATATCCCAAGTTTGTTGGAGCTTCCTTCCTCAATTCAGAAT CTATATAAACTGGAGGTGTTGCACATTATTGACTGCACAAATCTGGAGACTCTTCCTGTCGAAATAAACCTTGAATTTCT CAAGATCCTCCATCTTACTGGATGCTCACGGTTGAAGAGCTTTCCAAGTATCTCAACCAATGTCTCGGAGCTCTTTCTAG AACGAACAGCTATTGAAGAAGTTCCTGGATGGATCGAGAACTTTGCTCACCTCACTTATCTACACATGCGTGGATGCAAC AAGTTAAAATATGTTTCCTTAAACATTTATAAATTGGAACATCTAGAGATGGTTGACTTTTCATACTGCGGCTCGTTGAC TGCAGCTAGCTGGATTGAAAGTCCACGTCTGCTGGCAATGGAAACAGAGAATATCCACTCGAAGTTACGGGTCCTCAAAG AGGCTTCCTTTCTTCTTCCAGATAATTATGTCCCAAAAATCCAGCTCAAACTGATCAAATGCTACGAACTGGATGAAGAG GCTATCCTTCGGCAACAACCATGGTTTTTCAAGTCCATGATGTTTTTAGGTAATGAAGTGCCTCCATATTTCACGCACCG TAATACTGGAACCGTTCTCATCGTCCCTCTACTTCAGACCTCTCTTTCTTAA |
| AA seq | Len:1164 aa METITTAKLWEGMQPWTSLITVLSFSLKKLWLSGSPCLMEIPSSLQNLYGLVELSIRNCTNLEILPNEINLKFLDQLDLS GCSQLRSFPDISTNISILILCRTAIEEVPCWIENFSRINYIRMTGCNNLHCVSVNIYKLIHLETVDFSNCEVLTEARLDG SPDKQKMTTDNINSKLPDDYVPKVMISLINCFRLDQEILYHKQAVFFKSIELPGEEVPSYFTRRTTGNSLTIPLLRTSPS QPVLRFRACAVVNSIPISKVTRLDCHMVIFDCCFPLNEDNARLAEVNHYQVEIQFRLISDYPQFKLKAFGILLLEEYGDS AVEMSASRNWVYDLFPSFRGEDVRKKFLSHFLKELDRKMINAFKDNEIERSQSIWPELVQAIRDSRIMVVVFSETYASSS WCLNKLLEIVTCKEEFGRLVIPIFYHVDPSHKALTDVANMGGYDSQNWESDATMIEDITNDVFRKLLSTTSKECEDLVGI EDHIAEISTLLRLESEEVRMLGIWGSSGIGKTTIARALLNRFSSRFQRSIFIDMAFVSKSKNLYPSANADDYNLKSHLRK EFLSEILGEKDTKKEHVGALEERLKHRKVLIIIDDLDDPMVLDALVSQNHRFGRGSTIIMVTKDKHLLRARKVDCIYEVV LPSKDLSLKMLCRYAFSKDSPPDGLMELASEVALLAGNLPLGLKVSGSHLQGRNKEDCIDMLLRLRSGLDGRIGKTMRVS YDGLNNRKDKAIFRHIACFFNGAHINDIKELLANSDFDINIGLVNLIDKSLIQVRSGNVEMHCLLQEMGKEIVRAESNDP GEREFLVDSKDICYVLSNATILRLNNCSSLVELPSTIQYLNNLEELNMQFCKNLEILPKGVNLESLDHLDLSGCSRLKSF PDISTNISFLNISQTAIEGIPTNLHFDNLVKLFMYDMMSVQLWEGMQPLTPLMTMLPPTLEILDLSDIPSLLELPSSIQN LYKLEVLHIIDCTNLETLPVEINLEFLKILHLTGCSRLKSFPSISTNVSELFLERTAIEEVPGWIENFAHLTYLHMRGCN KLKYVSLNIYKLEHLEMVDFSYCGSLTAASWIESPRLLAMETENIHSKLRVLKEASFLLPDNYVPKIQLKLIKCYELDEE AILRQQPWFFKSMMFLGNEVPPYFTHRNTGTVLIVPLLQTSLS* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |