Names & Information
Knowledge of BnaC03G0086400ZS:
| Gene Name | BnaC03G0086400ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC03g08650D [Brassica napus] |
| Best Hit (SwissProt) | Disease resistance-like protein CSA1 OS=Arabidopsis thaliana GN=CSA1 PE=3 SV=1 |
| NT seq | Len:2934 nt ATGGCGAGCTCCTCCTCTTCGAAGTTCAAACCTTGCTCTAAGCCACCCCAAGACCAAGTGTTCATCAACTTCCGGGGAGT GGAACTACGCCTCAACTTCGTTAGTCATCTCAAGAATGGCTTAAAAAGGAATGGCATCAATGCTTTTATAGACACAGATG AAGACAAGGGCCAACATCTAAATGTTCTGCTAGAGAGAATCGAACGGTCGAAAGTTGCGCTAGCCATATTCTCCCCAATG TACACGGAGTCAGATTGGTGTTTGAAGGAGCTTGCCAAGATGAGAGAAAGAATGGAGCAAGGCAAGCTCGTGGTGATTCC AATCTTTTACAAGGTGGAGCCTGCCACTGTTAAAAGGCAGAGAGGAGAGTTCGGTGACAAGTTCAGGGATCTGGTTGAGT GTCTTGATGAGGAGACCAAGAACAAATGGACAGAAGCTTTAAAGACTGTTCCTCTGTTGACCGGATTCGTCTTAGACGAG AAAAGCGATGAAGACGATCTCATCTACAGAGTCGTCAAGGAGGTAACAAAAGCGCTGAACAACACTTCACGAGCTTCTCC CCTTTCATCAGAAGGTACTGATCTTTTACAGCAGAAAAAAGTTGAGAGCTCTTGTGGAATTGAACTACGTGTAAAGCTGC TAGAAGAAAAGCTAAGCTTTGGGTTTGAGGAAACTACTCGTACCATTGGTGTTGTTGGGATGCCTGGCATTGGTAAAAGC ACTCTAGTTAAAAAGTTTTACGAGAAATCGAAGAACCGGTTCTTGAGTCATGTGTTTTTATCAGATGTACATCAATCTAC AAAGGATTACGGCTTGGGTTACTTGGCGGCAATACTCTTGGAAGACTTACTCAAGGTCAAGAGTCCCAGGTTTGAGAATG TCCAGGCTGCACATGAAGGCTACAAGGATCAGCTACTCAGAACCAAAACACTTGTTGTTCTTGACAGTGTCAGTGACAAG GAACAAATTGTTGCTATTCTCGGAAAACGTGATTGGATTAAACAAGGAAGCAAGATTGTCATTGCAACAAGTGACAAGTC GTTGGTCCATGAATGGGTCGATGATATTTATGAAGTCCCTCGACTAAGCTATAAACACAGCTTACAACACTTTTCTCACT ATGCCTTTGGTGGAGAAAATTACGATTCGAGTTTCTCGAATCTGGCGAAAGATTTTGTGCATTATACCAAAGGAAATCCA CTAGCTCTCAAGGTATTGGGTGCTGAGCTTCTGGGGAAAGACGTGTCTCTCTGGTATTCAAAATTGGATGCGCTGAGCCA GTACCATAATGGTCGAGAAAGAAGCTCTAGGAAGATGCTAGCACAAAGCTCCAGTGAGATGCTTCAAAGTGTCTGGAAAC AAAGCTATGATGCACTTAACCAGCAACAGAAGGATACACTTCTTGACATTTCTGGCTTCAGGTCACTGGACAAGGATTAC GTAGCAAGTTTACTAGATTCATATGGAGCAAATGCCACCGACGCTAGGATTGAGATAGAAGAACTCGTCCACAAGTTCCT CATTACTATATCTGGAGGCAAAATAGATATGCACGATACACTGCATATGTTTTGTAAGGAACTTGGTCAAGAAGCCTCTG CTCCTGACGGAAAAGGGAGACTAAGGTTATGGGACCATCACGTGATAACTGATGTGTTAGACAACAATAAGGGAGCTTCT AGGATTAGGTCTATCTTTCTTGACTTGGCTGATGTTAAGATGAAGAGCCTCCACAGTCAAGCATTTGTCTCGATGATCAA TATGCGGTACTTAAAAATCTACAACACCGATTGTCCTCAAGAATGTGATCCTGACATTACCTTAAACTTCCCGGATGGAC TCCAGCTCCCTTTGGAGGAGGTGCGATGTCTCCATTGGCTAAAGTTCCCGTTGAAAGAACTTCCACCAGATTTCAACCCG CAAAATCTTGTGGACGTTAAGCTTCCTTACAGCGAGATAGAAAAAGTTTGGGAGGGTGACAAGGATGCATCGAAACTTAA ATGGATCGACTTCAACCACTCAAGAAAGTTGAGCACCTTGTCGGGATTAGCAGAGGCTCGAAATCTTCAAGAACTGAACC TTGAAGGCTGCACAGCATTGGACATGTTGCCCCAGGATATGGAAAATATGAAGTCTCTTGTTTTCCTGAACCTGAGAGGC TGCACAAGTCTTAAATGTCTTCCAGACATTAACTTGATGTCTCTTCAAATCCTCATCCTCACCAACTGCTCAAAATTTAA GGTGTTTGAGGTAGTTTCAGAAAAGCTAGAAGCAATATACTTAGACGGTACTGCGATAAAAGAGCTTCCTTCTGACATTG GGAAGCTCCAAAGACTTGCCGTATTTAACATGAAAGACTGCAAGAAGCTGAAAACACTCCCTGACAGCCTTGGCGAACTT AAAGCTCCTCAAGAACTGATACTTTCTGGCTGTTCAAAGCTCAAAAGTTTTCCACAAGTTGGGGACAACATGGAGCGTCT GGAGATTTTACTTCTAGATGGAACAGCTATCAAAGAGTTGCCAAATATATTATCACTCCGGCGCATATGTTTAAGCAAAA ATAAAATGATATGTCGCCTCCCAGAGAACATCAGCCAATTTTCTCGACTCAAATGGCTTGACATGAAGTACTGTAACAGC GTCACACATATTCCTAAGCTACCACCAAACCTTCAATGCTTAGACGCACATGGATGCAGCTCACTGAGAACAATTGCGCA ACCACTTGCCCAAGCTATGGCCACAGAGAGTATTCATTCCACTTTCATTTTCACGAACTGCAACAGATTGGAACAAGCTG CAAAGGAGGAGATAGCATCCTTTGCTCAAAGGAAGTGTCAGCTACTACCTAGTGCACTTAAACTCTGCAATAAGGTATCT TATCTCTTCCTCGCCATCTTTTTAAAAACTCCAAATCTAATGGCATTTTCTTGA |
| AA seq | Len:978 aa MASSSSSKFKPCSKPPQDQVFINFRGVELRLNFVSHLKNGLKRNGINAFIDTDEDKGQHLNVLLERIERSKVALAIFSPM YTESDWCLKELAKMRERMEQGKLVVIPIFYKVEPATVKRQRGEFGDKFRDLVECLDEETKNKWTEALKTVPLLTGFVLDE KSDEDDLIYRVVKEVTKALNNTSRASPLSSEGTDLLQQKKVESSCGIELRVKLLEEKLSFGFEETTRTIGVVGMPGIGKS TLVKKFYEKSKNRFLSHVFLSDVHQSTKDYGLGYLAAILLEDLLKVKSPRFENVQAAHEGYKDQLLRTKTLVVLDSVSDK EQIVAILGKRDWIKQGSKIVIATSDKSLVHEWVDDIYEVPRLSYKHSLQHFSHYAFGGENYDSSFSNLAKDFVHYTKGNP LALKVLGAELLGKDVSLWYSKLDALSQYHNGRERSSRKMLAQSSSEMLQSVWKQSYDALNQQQKDTLLDISGFRSLDKDY VASLLDSYGANATDARIEIEELVHKFLITISGGKIDMHDTLHMFCKELGQEASAPDGKGRLRLWDHHVITDVLDNNKGAS RIRSIFLDLADVKMKSLHSQAFVSMINMRYLKIYNTDCPQECDPDITLNFPDGLQLPLEEVRCLHWLKFPLKELPPDFNP QNLVDVKLPYSEIEKVWEGDKDASKLKWIDFNHSRKLSTLSGLAEARNLQELNLEGCTALDMLPQDMENMKSLVFLNLRG CTSLKCLPDINLMSLQILILTNCSKFKVFEVVSEKLEAIYLDGTAIKELPSDIGKLQRLAVFNMKDCKKLKTLPDSLGEL KAPQELILSGCSKLKSFPQVGDNMERLEILLLDGTAIKELPNILSLRRICLSKNKMICRLPENISQFSRLKWLDMKYCNS VTHIPKLPPNLQCLDAHGCSSLRTIAQPLAQAMATESIHSTFIFTNCNRLEQAAKEEIASFAQRKCQLLPSALKLCNKVS YLFLAIFLKTPNLMAFS* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | hypothetical protein; K16226 disease resistance protein RPS4 (A) |