Gene Name | BnaC03G0191200ZS |
Gene Location | |
Gene Structure | |
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Protein Name | |
Alternative splicing | |
Homology | |
Best Hit (NR) | BnaCnng59870D [Brassica napus] |
Best Hit (SwissProt) | Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1 |
NT seq | Len:4032 nt
ATGGCGACCTACGAAAAACCACAGGTGTCCCCACCACAGGTGTTCCTCAATTTTCGAGGAGCCGAGCTGAGGCAGAGCTT
TGTCGCTCACCTGGAGATGGCCTTGATAAAGAGCGGAGTCAACGTCAGAAACGATGGAAGGATGATGATACGGGGTGTTG
AAAATTTATTCCAACAGATCGAGGAGTCGACAATTGCGCTCGTGATCTTCTCGAAAAGCTACACCGAATCGAGGTGGTGC
TTAGACGAGCTGGTGAAGATTAAAGAGCTGGTGGAGGAAGGCAAACTCATTGCGATTCCCATTTTCTACGAGGTGAGTCC
ATCCCATGTGAAGGAGCTTGACGGAGATTTCGGACTTAACTTGTGGAATCTAGGGAATCGTACTAGTGATTTCGACAGGC
TCAAGAAATGGAAGGAAGCTTTAGATTTCATTTCCTCAAAGATGGGGCTCGTGTTCAATGAGAAAAGAAACGAATCTATC
TTTATCCATGAAATCGTCAAGCAGGTCCAAAGGACTCTGACCAGTCTTGGCGTCCGAAACCCTGTTAGTAGTGCTGATTG
CGATAGTGTTGGCTCACTCCAAGAAGAAAAGAAGCAAGAAAGCGAAAGCCAAAGCCAAAGCTCAAGCTCGACAGACCCAA
AGCATCAAGTGTTCATCAATTTCCGGGGAGCCCAGCTGCGTCATAGTTTTGTCAGCCATCTCGTGGACGCCTTGGAAAGG
CACGGAGTCAGCTTCTTCGTAGATGCAAACCAGTCGAAGGGTGAAAAACTTGAAAAAATTTTCAACAGGATCGAGGAGTC
TAAGATCGCACTCGTTGTCTTCTCTACCGGTTACACAGAATCGGCTTGGTGCTTACAAGAGCTGGTGAAAATCAAAGAGC
TCATGGACGAAGGCAAACTCGTGGCCATCCCAATCTTTTACAAGGTGGAACCATCCCAAGTTAAGAATCTGACTGGAGTT
TTCGGTGAAAGCTTTTGGAATTTGTGGCGTATTCAACGGGATAGCCATATCATTAAATGGAAGGAAGCTTTCAGGTCTAT
TGCGTCCAAGTTAGGCTTCAACTTGAGCGATCACGGTGGTAATGAGAGTGAGTTCATCACTCGTATCGTCGAAGAAGTCC
TACATCTTCTGTCGCAGCGGCAAGGAGAAAACCCGTCTCTCGTTCCTTCCACAAAGAAACCAAAGCTTACTGAATCGCCC
ACCACAGCAGAAAAGCATGAAACGTATCACAACGTTGGAATGGAGCAATTGGAGGAGAAGTTAGAGTTTGATTCCAATGA
TACTCGAATTATTGGAATTGTTGGGATGGCTGGTATTGGCAAAACCACCCTCGCAATGATGCTGCACGCAAAGTGGAACC
GCAACTTTCTACGCTGCGTTCCTTTTCTGGATATCCGTAACAAGTCAGAGGAGCATGGCCCAGTGTGGCTGCGAACGACA
CTCCTGGAACTTTTACTTGAGTGTAAAATAGGTGACGAGTTAACACATGGGTCTGTCAAAGCTGAACTACTCAAGACCAA
GTTCTTCGCTCTTCTGGATGACGTGAGCGACAAGGCACAGTTAAAGTTTCTCCTCGGTGAACGCGACTGGATTAAGAAGG
GAAGCAAGATTATTATTACAACACGTGACAAGTCATTGCTTGAGGGATTTGCTGATGATTCTTATGTGGTTCCAGGATTG
AACGATGATGAGGCCTTTCAACTCTTTAAATATCACGCCTTCAGTGATAAACTCTGTAGTCCCACTAGTACCTTCCTGAG
GCTCTCTAGAATGTTCGTGGATTACGCTCGAGGACACCCATTGACTCTCACATTACTAGGTATGGAACTTAATGGGAAAG
GTGCGGATGGATGGGTGTCCAAATTGGAAATGGTGACACAAAGATCCAGTGTTATGTTTGCTAATCAACTTGAACTTAGC
GAGAAGCAGGAAGATATGTTTCTCGACATAGTGCACTTTTTTCAATCAGAGGATGAGTATTTTGTTAGGAGTTTACTAGA
TTCGGGAGATCCTGATTCTACTGATGCGGTGAGTGAAGTAAAAGATCTCGTCAACAAATTCCTGATTACAACTGCTGACG
GCCGAGTAGAAATCAACGTTCCACTATATACGTTCTGTACCGACCCTGGTTCTCCTCGGTGGCTTAGGCTGGGGAACTTT
GAAGATATCATGAAGGAGCCAATGAAAATGAAAAAAACAGATGCCAAGAATGTAAGGGGTATTTTCTTGGACACGTCAAA
GTTAGAGAAGAGCATTTGCTTGGACATCTCAACCTTCACTGATATGCGCAATCTTCGATACATGAAAATATATGATTCTT
GTTGTTCTCGGCGATGTAAAAATCAAGACTGCAAATTATACTTCCCCGATGGGCTTGAGTTCCCCTTGGAAGAGGTTCGA
TATCTCCACTGGGTGAAATTTCCATTGGATGAGCTTCCACCGGACTTCAGACCGGAGAATCTTGTTGACCTTAGGCTGCC
ATACAGTAACATTACACGTGTTTGGGAAGGCGAAAAGGATACACCACGGTTGAAGTGGGTAGATCTAAGCCACTCGAATG
AGTTGGTCGACTTGTCAGCATTGTCAAAGGCTGTAAATCTTCAAAGACTAAATCTGGAAGGCTGCACGAGTTTGGAGGAG
TTGCCGGTGGAGATTCAGAATATGAAGTCACTTGTTTTCCTGAACCTAAGAGGATGCATAAGTCTGTGGTCTCTTCCGGA
GCTGAATTTAAGCTCTCTGAAAACACTCATCCTCAGTGATTGCTCAAACCTCGACGAGTTTCAGCTAGTTTCAAAAAGTG
TAGAATTTCTTCATTTGGATGGCACAGCAATCAAAGGACTTCCTCAGGGTATAGAGAACCTCCAAAGGCTTGTCGTGTTG
AATTTGAAAAACTGCAAAATGTTGGAGTGTCTTCCCAACTGTCTGAGCAACCTGGAAGCTCTTGACAAACTAATACTCTC
TGGTTGTTCGAAGCTTAAGAATCTTCCGGATGTCAAGAATAGCTTAAAACATCTGCAGGTTTTACTTTTTGATGGGACAG
GAGCAAAAGAGATGCCAAGCATCTCATGCTTCACTGGATCCGAAGGCCCAGCGTCTGGAGATGTGTTCTTACAAACTCTA
GGATCGCATTGCAGCGTGAGAGAATGGCCATGCGGTGTTAACGTAGTATACTCACTGCGGCGACTGTGTTTGAGTGGAAA
TGATTTTCTCAGCCTGCAACCTGATATTTGGAAACTTTATAATCTGAAATGGCTCGATGTGAAGCAGTGCAAGAAGCTGA
GATCTATTCCAATGCTTCCACCAAGACTTGAGTACTTTGACGCACATGGTTGTGATTCCCTTGAAAGAGTTGCAAAACCT
ATAGCCTTTCTGATGTTGTCTGATCAGAGCCATGCCACATTCAATTTTTCCAACTGCAACAAGTTGGATCGAGATGCAAA
GGATAATATCGTATCTTATACCCGGTGGAGAAGCCAGTTAGTGCTAGGTGAACTCACACTATGCAGTGGGGGTTTAGTTT
CAGAAGCACCGATTGGAACTTGTTTTACTGGATGGGAAGTCCCTGCCTGGTTCAGTCACCGAGCCTACGGATCGTTGTTA
AAGACCAAGCTGCCTCCACACTGGTGTGATAATAAATTTACTGGGATTGGTCTATGCGCTGTTATCGTATTTGATGGCTA
CCACAACCAAAGGAAAAGTGTCTTATTGAAATGTAATTTTGAGTTTAAGAATGAAGACGGGTCTAGTAACCGCTTTAGCT
GCACGGTTGGAGGTTGGGGCGAACCAATTGACACACCATTGAAGCCTGTGTCGTCTCATGTCTTTATCGGCTTTACCAGG
AGGATGGATATCAACAAAATTAGTGAAGAGGATGATAAAGAGAAATGTGTTTCTACTAAAACCATTATTGAGTTTCAAGT
GACAGATGGTATGGAAAAGATCAAAGGTTGCGAGGTGGTGAAGTGTGGCTTTAGTTTGGTATATGCACCCGAAGAAAAGA
GGAATATATGTTCAGATTTAAAGACTTTTTAG |
AA seq | Len:1344 aa
MATYEKPQVSPPQVFLNFRGAELRQSFVAHLEMALIKSGVNVRNDGRMMIRGVENLFQQIEESTIALVIFSKSYTESRWC
LDELVKIKELVEEGKLIAIPIFYEVSPSHVKELDGDFGLNLWNLGNRTSDFDRLKKWKEALDFISSKMGLVFNEKRNESI
FIHEIVKQVQRTLTSLGVRNPVSSADCDSVGSLQEEKKQESESQSQSSSSTDPKHQVFINFRGAQLRHSFVSHLVDALER
HGVSFFVDANQSKGEKLEKIFNRIEESKIALVVFSTGYTESAWCLQELVKIKELMDEGKLVAIPIFYKVEPSQVKNLTGV
FGESFWNLWRIQRDSHIIKWKEAFRSIASKLGFNLSDHGGNESEFITRIVEEVLHLLSQRQGENPSLVPSTKKPKLTESP
TTAEKHETYHNVGMEQLEEKLEFDSNDTRIIGIVGMAGIGKTTLAMMLHAKWNRNFLRCVPFLDIRNKSEEHGPVWLRTT
LLELLLECKIGDELTHGSVKAELLKTKFFALLDDVSDKAQLKFLLGERDWIKKGSKIIITTRDKSLLEGFADDSYVVPGL
NDDEAFQLFKYHAFSDKLCSPTSTFLRLSRMFVDYARGHPLTLTLLGMELNGKGADGWVSKLEMVTQRSSVMFANQLELS
EKQEDMFLDIVHFFQSEDEYFVRSLLDSGDPDSTDAVSEVKDLVNKFLITTADGRVEINVPLYTFCTDPGSPRWLRLGNF
EDIMKEPMKMKKTDAKNVRGIFLDTSKLEKSICLDISTFTDMRNLRYMKIYDSCCSRRCKNQDCKLYFPDGLEFPLEEVR
YLHWVKFPLDELPPDFRPENLVDLRLPYSNITRVWEGEKDTPRLKWVDLSHSNELVDLSALSKAVNLQRLNLEGCTSLEE
LPVEIQNMKSLVFLNLRGCISLWSLPELNLSSLKTLILSDCSNLDEFQLVSKSVEFLHLDGTAIKGLPQGIENLQRLVVL
NLKNCKMLECLPNCLSNLEALDKLILSGCSKLKNLPDVKNSLKHLQVLLFDGTGAKEMPSISCFTGSEGPASGDVFLQTL
GSHCSVREWPCGVNVVYSLRRLCLSGNDFLSLQPDIWKLYNLKWLDVKQCKKLRSIPMLPPRLEYFDAHGCDSLERVAKP
IAFLMLSDQSHATFNFSNCNKLDRDAKDNIVSYTRWRSQLVLGELTLCSGGLVSEAPIGTCFTGWEVPAWFSHRAYGSLL
KTKLPPHWCDNKFTGIGLCAVIVFDGYHNQRKSVLLKCNFEFKNEDGSSNRFSCTVGGWGEPIDTPLKPVSSHVFIGFTR
RMDINKISEEDDKEKCVSTKTIIEFQVTDGMEKIKGCEVVKCGFSLVYAPEEKRNICSDLKTF* |
Expression(FPKM) | |
Classification(Core/Distributed) | |
Function classfication (GO) | GO:0005515 |
Pfam | Leucine Rich Repeat |
KEGG | hypothetical protein; K16226 disease resistance protein RPS4 (A) |
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