Names & Information
Knowledge of BnaC03G0668000ZS:
| Gene Name | BnaC03G0668000ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: protein VARIATION IN COMPOUND TRIGGERED ROOT growth response-like [Brassica rapa] |
| Best Hit (SwissProt) | Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1 |
| NT seq | Len:3507 nt ATGGCTTATTCTTCTTCATTCTCTTCTCATAATTGGTCATATGACGTTTTTCCAAGCTTCAGCGGAGGAGATGTCCGCAA GACATTCATGAGCCACTTTCTGAAGGAGCTAGATCGGAAACTTATCATTGCTTTCAAAGATAACGAGATCAAGAAAAGCC GATCGCTTGATCCCGAGCTTACAAAGGCGATCAAGGATTCAAGGATTGCAGTGGTCATTTTCTCCACAAACTACGCCTCT TCAAGCTGGTGTTTAAATGAGTTGCTTGAGATCGTGAAGTGCAAGGAAGAGTGTGGTCAAGTGGTCATACCAGTTTTCTA CGGTTTGGATCCTTCCCACGTGAGGAAACAGACCGGAGACTTTGGGAAGATCTTTAACAAGACATGCCAAAATAAAACAG AGGACAAGATCATTCGATGGAGGGAAGCTTTGACTGGTGTAGCTAACATCTTTGGATATCATAGTGTCACCTGGGCTAAC GAAGCAAAGATGGTCGAAGAAATAGCGGATGATGTTTTGGATAAATTGAATTTATCTCCATCAGATGAGTTTGAGGATTT TGTTGGAATTGAAGATCACATCAGAGAGATGAGTTCATTGCTGCACTTGGATTCCAAGGAGGTAAAAATGGTCGGGATAT GGGGTCCCTCCGGAATTGGCAAAACTACCATTGCAAGAGCTCTATTTAGTCGGCTCTCTCGCCGGTTCCAAAATAGTGTT TTCATAGACAAGGTTTTCATATCCAAGAGCATGGAGGTTCATAGAGGAGCTAATCTATGTGACTATAACATGAAGCTGCA CTTGCAACGAGCTTTTTTGGCTGAAGTTTTAGATAAGAGAGATATAAAGATAGATCATATAGGTGCAGTGGGAAAGATGC TAAGGCACCGAAAAGCTCTTATCTTTATTGATGATTTGGATGATCAAGATGTGCTAGAAGCCTTAGCAGGAAGAATTCAA TGGTTTGGAAGTGGGAGTCGAATAATTGTGGTTACAAAAGATAAGCATTTATTAAGGGCGCATGGGATTGATCACATTTA CGAGGTCTCTCTCCCATCTTATAAACTCGCAGTGGAGATGTTTTGTCGATATGCTTTTAGAAAAAGTTCTCCACCTGATG GTTTTGCGAAGCTTGCTTCTGAAGTTGTATTGCGTGCAGGTAGCCTTCCATTGGGTCTTAACGTTTTGGGTTCTAGTTTA CGGGGTAGGGACGTAGAAGATTGGCCGGATATGCTGCCGAGGCTTCGGAATGGTTTGGATGGAAAAATTGGAAGAACATT AAGAGTCAGCTACAACGGATTAAACAACAAGAAAGATGAAGCAATATTTCGCCACATTGCATGTCTTTTCAATGGTAAGG AAGTCGATCACATAAAGATGATGCTAGCAGATAGTGACCTAGATGTTCATATTGGGCTTAAGAATTTAGTCGATAAGTCT CTTGTACATGTAAGAGAAGATAATGTGGTAATGCACTCTTTGCTACAAGAAATGGGTGAAGAGATTGTTCATTCACAGTC CGATGAGCCTGGAGAACGAGAATTCCTTATTGATTCGAAGGATATTTGCCATGTGTTTGAAAATAACACTGGTACTAAAA AGGTTTTGGGTATAGCACTGAATATGGATACGATTAAAACTCTTCATGTATACGAGAATGCGTTCAGAAGGATGTGTAAT CTCCGTTTCTTAGAGTTTGACTCGCAAAGCCATTATATGTTAGGAAGAGCGGGTCAATCACATTTACCAGAAAACTTCAG CTATTTACCCTCTAGTCTCAAATTATTGTGTTGGTACGGGTATCCAATGAGATGTATGCCTTCTAAGTTTTGTCCTGAAA ACCTCGTTATGCTAAAAATGCGGATAAGCATGCTCGAAAAGCTGTGGGAAGGAGTTGTGTTGCTTCCATGTCTCAAGGAA ATAAATTTGTGGGGATCTTCAAACCTCAAAGTAATCCCGGATCTTTCAAAAGCCACAAATCTTGAGAGACTTTATCTTGG GCTTTGCTCAAGTTTGTTGGAGCTTTCTTCTTCGGTTCGAGATCTAAAAAAACTGAGAGTTCTGCTGATGAATTTATGCG TAAAAGTGGAGACTATTCCAGCCGGCATTTATCTCAACTCTCTCGTGCACCTTGATCTCGAGGGATGCTCAAGGTTTAAG ACTTTTCCCGAAATCGCAGAGCAAGATCTAACACATACAAACCTAAAGAGTGAGAAACTAAGGGAAGTAGTGCATAAGCC GTTTACTACCCTCATGACGAGATTGCAACTCTCGGATATCCTAAGTTTGGTGGAGCTTCCTTCTTCGATTCAAAATCTCA ATAAACTGAAGCAGTTGGACATTAGAGACTGCAAAAATCTGGAGACTCTTCCAACAGGCATAAACCTCCAATCACTCGAG TATTTAAATCTCTTTGGATGTTCACGGTTGAGGAGTTTTCCTAATATCTCAGTAAACATCAAAGGGCTGGATCTAAGTTT TACAGCGATTGAAGAGGTTCCTTGGTGGATCGAGAAATTATCTATGCTCAGATATCTATTAATGGCGAAATGCAACAACT TACGGCGTGTATCCCTGAACATTTTAAAACTAAGACATCTTCAGAAGGGTGACTTTGGGAACTGTAAGGCATTGACTGAG GCTAGCTGGGATGGTTGTCCAAGCGTTGTGGCGATTACAACGGACAATATTCACTCTAGGCTTCATGATAAGGCTGGTTG TTCTATCTCAATGGCCCAGCTCGATTTCATCGGCTGCTTCAACTTTGATCACAAAGTTCTATTTCAACCACAAACAGTTC CCATGCAAGTGATACTATCAGGCAAAGAAGTGCCTTCATATTTCACTCACCGTACTACCGGAACTTCTCTCACTAATATT CCTCTACATCACATCTCTCCCTCCCAACCATTCATCAGATTCAAGGTTTGCGCCTTGTGCGATGTTGGATCTATTAGCAC AGATGGGTTTAATACGTTCGAAATCCAGGTATGTTTTCGGTTCATAGACATATCCAGAAACTACTTTGATCATGTTGATT TCCAACGAAGTTTCTCATCGGAGTTGGGAGGACATCTGTTTATAAAAGACTGTTGTGTCCCTCTAAACAAAGACATTACA CCTCTAGCTCACGTGGATATACAATTTCGTCTCATTAAGGAAAACAGTGAGTTTAAATTAAAAGGATGTGGCATACTGCT TCCCGAGAACAATGAATCGCTGGGTAGCCAACCTTGTAATCCAAATATTCTTCAGCATGTTGGTGGAGGAAACACAAGCA ACGATGCTTACATGGGAGGCCATGAGACTGAACAAAGCCAAGAGTGTGCACATGTTTGTGAAGCTGAGGAAGACAATGTT GTTAATGATGGATGCCGTGAGACTGAGCAAAGTCATGACAAATTTGTAGGCAGCAATGTAGAGGCTTTGAGAAACATCAA ACGAATGTGGGTAAGATTACTGGACATCTTTTGCTTCGGATTACGTGAAGAAACATTGAATCTTTGA |
| AA seq | Len:1169 aa MAYSSSFSSHNWSYDVFPSFSGGDVRKTFMSHFLKELDRKLIIAFKDNEIKKSRSLDPELTKAIKDSRIAVVIFSTNYAS SSWCLNELLEIVKCKEECGQVVIPVFYGLDPSHVRKQTGDFGKIFNKTCQNKTEDKIIRWREALTGVANIFGYHSVTWAN EAKMVEEIADDVLDKLNLSPSDEFEDFVGIEDHIREMSSLLHLDSKEVKMVGIWGPSGIGKTTIARALFSRLSRRFQNSV FIDKVFISKSMEVHRGANLCDYNMKLHLQRAFLAEVLDKRDIKIDHIGAVGKMLRHRKALIFIDDLDDQDVLEALAGRIQ WFGSGSRIIVVTKDKHLLRAHGIDHIYEVSLPSYKLAVEMFCRYAFRKSSPPDGFAKLASEVVLRAGSLPLGLNVLGSSL RGRDVEDWPDMLPRLRNGLDGKIGRTLRVSYNGLNNKKDEAIFRHIACLFNGKEVDHIKMMLADSDLDVHIGLKNLVDKS LVHVREDNVVMHSLLQEMGEEIVHSQSDEPGEREFLIDSKDICHVFENNTGTKKVLGIALNMDTIKTLHVYENAFRRMCN LRFLEFDSQSHYMLGRAGQSHLPENFSYLPSSLKLLCWYGYPMRCMPSKFCPENLVMLKMRISMLEKLWEGVVLLPCLKE INLWGSSNLKVIPDLSKATNLERLYLGLCSSLLELSSSVRDLKKLRVLLMNLCVKVETIPAGIYLNSLVHLDLEGCSRFK TFPEIAEQDLTHTNLKSEKLREVVHKPFTTLMTRLQLSDILSLVELPSSIQNLNKLKQLDIRDCKNLETLPTGINLQSLE YLNLFGCSRLRSFPNISVNIKGLDLSFTAIEEVPWWIEKLSMLRYLLMAKCNNLRRVSLNILKLRHLQKGDFGNCKALTE ASWDGCPSVVAITTDNIHSRLHDKAGCSISMAQLDFIGCFNFDHKVLFQPQTVPMQVILSGKEVPSYFTHRTTGTSLTNI PLHHISPSQPFIRFKVCALCDVGSISTDGFNTFEIQVCFRFIDISRNYFDHVDFQRSFSSELGGHLFIKDCCVPLNKDIT PLAHVDIQFRLIKENSEFKLKGCGILLPENNESLGSQPCNPNILQHVGGGNTSNDAYMGGHETEQSQECAHVCEAEEDNV VNDGCRETEQSHDKFVGSNVEALRNIKRMWVRLLDIFCFGLREETLNL* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | NB-ARC domain |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |