Names & Information
Knowledge of BnaC04G0398500ZS:
| Gene Name | BnaC04G0398500ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC04g32150D [Brassica napus] |
| Best Hit (SwissProt) | TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 |
| NT seq | Len:2913 nt ATGGCTTCCTCATCTGCGTCTAAGTATGATGTCTTCCTCACTTTCCGTGGTGAAGACACACGCCATTCGATCGTGAGTCA TTTGTACGCAGCACTTACTAGGAGAGGACTTTTTACCTTCAAAGACGATAAAAAGCTTGAGATAGGCGATCGCATCTCTG AAGAACTACGCAGAGCCATACAAGGCTCAGATTTTGTTGTCGTGGTTCTCTCGGAGAAGTACGCTACTTCTAGGTGGTGT TTGATGGAGCTCCAATTGATAATGGAGCTTCAGAGGGAGGGGAGACTCAGCGTCTTCCCCGTCTTCTATAAAGTAGAACC CTCTTCAGTGAGGCATCAGCTAAGAAGCTTCGATCTTGAAAGATACCAACGTGATCCAGTGATGGCAAAAAATATTCCCA TGTGGAGAGAAGCTCTTAATCAGATCGCAGGCCTTTCAGGCATGGAATCTAGACGCTGCGTTGATGAGGCAACAATGGTT GAGAAAATCGCACGAGATATTTCAAGACGCAAGACATTGATGCGTAATATAGACTCGAAACATATTGTTGGAGTGGAAAC TCACATGCAAGGTCTCAAGTCTCTCTTAGACATGGACTCGGAGAATTATGAAGTTCGTATGATTGGAATCTGGGGAATGG GAGGGATTGGCAAAACCACCATTGCCAAGTGTCTCTATGACCAGCTCTCATTTCAATTTGAAGCCACCTATTTCACACAA GATATCAAGGGTATTCACAAAGGCCATGATCTGATAAATTTACAAAAGAAACTACTTGTCTACAATACGCTTGGTGATGA TATCAGTCTGTGGAGCGTGGAAGCTGGACGTGAGGAAATAAAGGCTAGACTTGGGAACCACAAGGTTCTTCTTGTGCTTG ATGGTGTGGATAAAATAGAGCAGGTGCATGCTCTGGCAAAAGAGACGAGCTGGTTTGGCCCTCGGAGCAGAATCATCATA ACCACCCGAGACAGGGGCTTGCTCCGTAGCTGTGGAGTAAAGACCATTTATGAGGTGAAGTGTTTGGACGATAAGGGTTC CATGCAGATGTTTAAACAGATTGCTTTTGAAGGAAGAAGTCCTCCTTGTGATGATTTTGAGCAACTCTCACTCCGAGCAG TTCGGCTTGCTCACGGGCTTCCTTCTGCCATTAAAGCCTATGCCTTATTTCTCCGGGCAAGGGACAACTCTCTTGAGGAG TGGGAAGAAGCAGTATGTGGACTTGAAAGTGCTACTGACGAGAACATAATGGAAATCTTGAAACTTAGCTATGATGGCTT AGCAAAAAAACATCAGAATGTTTTCCTACAAGTTGCATGCCTTTTTAACGGAGAAACTTACCAGCGTATCATTACACTAC TTGATGGTTCCGGACATGAGAGGAATCTGTGTATAAGAGTTTTGGCAGAGAGATCACTCATCAATATAACAACCAATGGA TATGTAATCCTGCATAAGTTGGTTGAACAAATGGGAAGAGGAATTATGCTTGACTGTCAAAAGTTCATCGGTGATCCTGA GAAAGTTGTTGCTGCACTGGTCCACGGAGAAGGAACAGAACAAACTGAATGCATCTCCCTACACACCTGTGAGATGACCT GTGCACTCTCCTTGAAGAAGAGTGTTTTTGAACTTATGTATAAACTCAAGTTTTTCAAGGTCTACAAGCATGTTAACGAC ATAGAATCGAGGCTGCAGGTCACTACGGACGATGATTACCTTTGCATGCCGTGTAACCTAAAGTTGTTCCACTGGGATGC ATTTCCATTGACCACCTTGCCTCTCAAGGCTGGTTCGTACTTTCTTGTTGAACTCAATCTGCGTTACAGCAATCTAGAAA CACTTTGGAACGAAAAACTGGATTTCGAGAATTTGAAGAAACTAGATGTGACGGGATCTAAGAATCTCAAACAACTTCCA GATCTTTCAGATGTCAAGAATCTTGAAGAGTTGATTCTAGAACAATGCACGCGACTGGAAGGGGTTCCAGAGTCCATTGG ATATTATAAGCCTACCCTACGTAGGCTTGTTCTATCATACTACGGTGGGCTTGAGAGTCCCATGCGTGTTGTTGTTAGAC GGAAAGTGACGCAAAGTAGTACTACATTGGAGTTCCCAACTGCAGAAGTGAGAATGAAACTTGGGGATATAACTATCGCG GGAGACGTAATATTTCATTTTTCTTCAAGTTGTCAAGGAAATGCTGAATACTTCTCCTTAAGTTCTTCTGAGCAACACAG CCCTGTCCAGCAAGCTCCTAGGGTCATCTCTGAGTTCAACAAATTTGAGACACTCAATATCAGGAGGTTCAGCTACGAAG AGAATGGTCGACCTGTCACCTTTCACAGCTTTCCAAATCTTCCTGGCCTGAAAGAGCTAAAACTAATCAACTTAAACATT CAAAAGTTAACTCTGTGGCTTCGAAACTGCGGCAAACTCGAGGAACTGCCAGAGCTAGCTCAGGTGCAGTCACTCACTCT TTCTAACTGTAGGAACCTCAGATCATTGGTGAAACGCTCTGATTCGGGAAGTTACTGTTTGCTTGAGCTTTCCCTTGACA ACTGCAACAATGTTGAATCACTGTCCGATCAGCTTAGTCAGTTCAACAAGTTGACATATTTAGATCTCAGCAGCCATGAT TTTGAGACATTGCCATCAAGCATCTCTGATCTTACATCCTTGGTAACTCTCTGTCTCAATAACTGCAAGAAACTCAAATC AGTGGAAGAAGTTCCACCGAGCCTCCAGTTTCTGGATGCACAGGGATGTGATTCCCTTGAAGCTAATGCTTTAGAAATTT TTCGAGAGAGACTAAACAAAAAGGTAACTGCACAGCCGCAGAGTGAGATGCCAACGTTTCAACGGGGTCACCAAGCCATG AAGAGTCGCTTGCCCAAGTTCCTACGCTGCTAA |
| AA seq | Len:971 aa MASSSASKYDVFLTFRGEDTRHSIVSHLYAALTRRGLFTFKDDKKLEIGDRISEELRRAIQGSDFVVVVLSEKYATSRWC LMELQLIMELQREGRLSVFPVFYKVEPSSVRHQLRSFDLERYQRDPVMAKNIPMWREALNQIAGLSGMESRRCVDEATMV EKIARDISRRKTLMRNIDSKHIVGVETHMQGLKSLLDMDSENYEVRMIGIWGMGGIGKTTIAKCLYDQLSFQFEATYFTQ DIKGIHKGHDLINLQKKLLVYNTLGDDISLWSVEAGREEIKARLGNHKVLLVLDGVDKIEQVHALAKETSWFGPRSRIII TTRDRGLLRSCGVKTIYEVKCLDDKGSMQMFKQIAFEGRSPPCDDFEQLSLRAVRLAHGLPSAIKAYALFLRARDNSLEE WEEAVCGLESATDENIMEILKLSYDGLAKKHQNVFLQVACLFNGETYQRIITLLDGSGHERNLCIRVLAERSLINITTNG YVILHKLVEQMGRGIMLDCQKFIGDPEKVVAALVHGEGTEQTECISLHTCEMTCALSLKKSVFELMYKLKFFKVYKHVND IESRLQVTTDDDYLCMPCNLKLFHWDAFPLTTLPLKAGSYFLVELNLRYSNLETLWNEKLDFENLKKLDVTGSKNLKQLP DLSDVKNLEELILEQCTRLEGVPESIGYYKPTLRRLVLSYYGGLESPMRVVVRRKVTQSSTTLEFPTAEVRMKLGDITIA GDVIFHFSSSCQGNAEYFSLSSSEQHSPVQQAPRVISEFNKFETLNIRRFSYEENGRPVTFHSFPNLPGLKELKLINLNI QKLTLWLRNCGKLEELPELAQVQSLTLSNCRNLRSLVKRSDSGSYCLLELSLDNCNNVESLSDQLSQFNKLTYLDLSSHD FETLPSSISDLTSLVTLCLNNCKKLKSVEEVPPSLQFLDAQGCDSLEANALEIFRERLNKKVTAQPQSEMPTFQRGHQAM KSRLPKFLRC* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |