Names & Information
Knowledge of BnaC05G0096900GG:
| Gene Name | BnaC05G0096900GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: probable disease resistance protein At1g12280 [Brassica rapa] |
| Best Hit (SwissProt) | Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2 |
| NT seq | Len:2658 nt ATGGGTGGTGTTATCTCAACAGCAACCGATTTCGTGGTTGAGAAATTATGTAGCTGCTTTTGTCTGGAAGTCCACCATAT TTGCAGACTCGACAAGAATCTAAAAACTCTGGTAGAAGACATGAAGATACTGGAGGCAAAGCGAAATGATGTGCTGAAAT TCGTGAAGAGGGAGGAAGACAGAGGTTTACAAAGGCTTAGTGGAGTTGATGTATGGCTTACGGCTGTCGGGAACATTGAA AACGAGGCCCGTGAAACCCTTATGGCTTGTACAAGTGAACTTCAAGGGTTGTCTCTTTGTGATGGTTGTTCAAGAAAACT AGTGGCAAGGTTTCGTTTTGGGAAAGAGGTTGTCTCGATGTTGGAAGATGTCGAAGAGCTCAAGGGTCGCAAATTAACTG AAGACATAAATGCTCTGGCTGTGCCACCTATGAGAGATGTGGTGGGGGAAAGAGATCTACAACCTATCATTGTTGGTCAG GACACATTGCTCGAGAGTGCATGGAGCCGCCTCAAGGACGGCGGAACCCAGGTTATGGGTCTACATGGCATGGGGGGAGT GGGGAAAACAACTCTTCTTGACCAAATCAACAATAAGTTTTGTGGTGCAAATGATGGGGTTGACATAGTAATTTGGGTTG TGGTGTCTAAGGTCAAACGGAACGAGAAGATTCAAGATGAGATTGCTAAGAAACTAGGCTTTTTTACTGAAGGGGATTCA TGGAAACAGAAAACAGAGGCCGAGAAAGCCTCTAGTATACGCAGTTCCTTGAAGGCTAAACGATTTGTGTTGTTTCTGGA TGACATTTGGAGCAAAGTGGAGTTAAAAGATATCGGTGTTCCGATTCCAACAAAGGAAAACAAATGCAAAATTGTATTCA CTACTCGTTCAAGAGAAGTATGTGCTCGCATGGGGGATACTAACCCAGTCGAAGTCAGTTGTCTAGACACCGACAAAGCC TGGGAGTTGTTCAAGGAGAAAGTCGGGGAGAACACACTGGGACGCCACCGAGGCATTCCCGATCTCGCAAGAAAAGTGGC AGGAAAATGCCATGGCCTACCATTGGCACTCAGTGTCCTTGGTGAGACCATGTCATCCAAGGACACAATACAAGAATGGC GCCTTGCAGTTAAGACTTTAACTTCAAATGCTGCAAAATTTTCTGGAATGGACGAGATTCTTCCAGTTTTGATGTATAGC TACGACAGCCTCAAGGAGAAGCATGTTAAGTCATGTTTCCTATATTGCTCTTTGTTTCCAGAAGATTTTGAAATCAGAAA AGATATCTTAATTGAATATTGGATCTGTGAGGGTTTCATACAAGAAAATCAGAGTAGAGAAAACGCATTCGACGAAGGCT ATAGTATCATCAGTTCTCTTCTCCGTGCATGTTTATTGTTGGAAGAACAAGTCGATAAAGTAAAAGTGAAAATGCATGAT GTGGTTCGGGAGATGGCTCTGTGGGTAGCATCTGATCTTGGGGAGCATGAAGGGCGATATACTGTGCAAGCCGGTGCTGG GTTACGTGATATACCAGAAGTTGAGAGTTGGGTGCCCGTGAGAAAGATGTCTTTGATGAACAATGAGATCCAAGAGTTAT CTGGCAGTCCGTGCTGCCCTGAACTTACAACTCTGCTTCTCCAAGAAAACAAGCTGGTAACTATCTCAAGCGAATTCTTT CGACAGATGCCTAGGCTACTCGTCTTGGATCTCTCGCGGAATAGCTGGTTCAATGGATTGCCAGAGAAAATGTCATTGGT CGCTTTGAGATACCTTAACTTGTCAGACACACATATAGAGCGACTGCCTGTTGGTTTACAGGAGTCGAGAATGCTAATAT GTTTGAATTTGGAATTCACGAGGAGCATTGAAAATGTTTCGGGGATGATATCCAAATTTTCGAGGTTGAGGAGATTGGGA CTACGGAATTCCTACACGAAGCTAGACATGAGCTTATTGGAAGAGTTGCAGCTCTTGAAATATCTACAAGTTGTAACCAT AGGTATAAACTCATGTTTGGTTGCGGAGAAATTGTCAAACTATGACAGGGTGGTGAAATGTGTTAAGAAGTTAGATTATA AGGACCTTCAGGATGAATCATTCAGAGTCTTGACTTTGCCGACTATGGACAACCTTTGTGACCTCGAGATAGAAAAGTGT GGAATGGCGGAGATAAAGGCAGAGGGAGCAGCAACTTCATTGTGGAACAGAAGTCCCACGAGTCCATCCTTCCTCAACCT TTCTACTGTCTTTATAAATTATTGCAACCGTCTCAAGGATTTGACGTGGCTGTTGTTCGCTCCCAACCTTACTATTCTTA ACGTTGGTCATTCAAATCAAATAGAGTATATAATAAGCCAAGAGAAAGCTACAAATGGTGTGGCAGGTACCATCATTCCT TTTGCAAACTTAGAACACTTTAGCTTCTATTGTGTACCAATGTTGAAGAGCATCTATTGGAGTGCTCTCCCTTTTCAATG CTTGAAAGGAATCAGGGTAGGAGGGTGTCCAAACCTGAGAAAGCTTTCATTGGATTCTGAAAGTGTTGCCAATGTAGATG GATTTGTTATCCAGTGTATAGAGAGACATTGGACAAGTAATATTGAATGGGAAGACGAAGCAACTAAACTCCGTTTCCAA GCTTCCTTCCCCTATTAG |
| AA seq | Len:886 aa MGGVISTATDFVVEKLCSCFCLEVHHICRLDKNLKTLVEDMKILEAKRNDVLKFVKREEDRGLQRLSGVDVWLTAVGNIE NEARETLMACTSELQGLSLCDGCSRKLVARFRFGKEVVSMLEDVEELKGRKLTEDINALAVPPMRDVVGERDLQPIIVGQ DTLLESAWSRLKDGGTQVMGLHGMGGVGKTTLLDQINNKFCGANDGVDIVIWVVVSKVKRNEKIQDEIAKKLGFFTEGDS WKQKTEAEKASSIRSSLKAKRFVLFLDDIWSKVELKDIGVPIPTKENKCKIVFTTRSREVCARMGDTNPVEVSCLDTDKA WELFKEKVGENTLGRHRGIPDLARKVAGKCHGLPLALSVLGETMSSKDTIQEWRLAVKTLTSNAAKFSGMDEILPVLMYS YDSLKEKHVKSCFLYCSLFPEDFEIRKDILIEYWICEGFIQENQSRENAFDEGYSIISSLLRACLLLEEQVDKVKVKMHD VVREMALWVASDLGEHEGRYTVQAGAGLRDIPEVESWVPVRKMSLMNNEIQELSGSPCCPELTTLLLQENKLVTISSEFF RQMPRLLVLDLSRNSWFNGLPEKMSLVALRYLNLSDTHIERLPVGLQESRMLICLNLEFTRSIENVSGMISKFSRLRRLG LRNSYTKLDMSLLEELQLLKYLQVVTIGINSCLVAEKLSNYDRVVKCVKKLDYKDLQDESFRVLTLPTMDNLCDLEIEKC GMAEIKAEGAATSLWNRSPTSPSFLNLSTVFINYCNRLKDLTWLLFAPNLTILNVGHSNQIEYIISQEKATNGVAGTIIP FANLEHFSFYCVPMLKSIYWSALPFQCLKGIRVGGCPNLRKLSLDSESVANVDGFVIQCIERHWTSNIEWEDEATKLRFQ ASFPY* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0006952 |
| Pfam | Leucine rich repeat |
| KEGG | RGA20; probable disease resistance protein At1g12280; K13459 disease resistance protein RPS2 (A) |