Names & Information
Knowledge of BnaC05G0213000ZS:
| Gene Name | BnaC05G0213000ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC05g19440D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3519 nt ATGGAGGCTGCCGTTCTATCGAAGGCGCATAGGCTCAAGTACGACTTCTTCCTCAGTTTCCGAGGCGAAGACACGCGTCA TACCGTCGTAAAGCGTCTCTACGACGCTCTCCACGTGAAGGAGAAAGCTCTCATCTTCCGCGACAACGAAGGCATGGAAC GAGGGCAAGCGATCTATCCAAGCCTCATCGCAGGCATAGAGGACTCCGCCGCCTCGCTCGTCGTCTTCTCCCCTTGCTAC GCTGACTCTCACTGGTGCCTTGATGAGTTGGCTACGCTCTGCGATGTGAGTTCATCGCTCGATCGTCCCATGATACCAAT CTTTTACAAGGTCGATCCCAACCATGTACGCAAACAGAGCGGTCATTTCGTGCAGGACTTCGAAACACACGCCATAAGGT TTACCAAGGAAGAGATGCAGCGATGGAGAGGAGCTATGAAAATAGTTGGAAATCTCCCTGGATTTATTTACAGAGGAGGA GAAAATGAGGATGAGATGATAGGGCTTGTGGTGAAGAGGGTTTTAGCTGAGGAGAACAATACACCAGAGAAAGTTGGAGA ATACACCGTTGGCCTTGATTCACGTGTTGATGATTTGATGAATCTGGTCGACTTTAAATCTAGTTGTGACGTTCAAATCC TGGGGCTTTACGGTATGGGTGGTATTGGGAAAACGACCCTTGCAAAAGCCTTCTATAACAAGATCGTTGACAACTTCAAG GAGCAACGAGTTTTCATCTCAAATGTTAGAGAAAGATCGTCAGGACAAGATGGTTTGGTCAATCTACAAAAGACTTTGAT TACTGAACTGCTTGGTTTGGTACCTGAGATAGAAGATGTTGACAGAGGGCGGGATATGATAAGAGAAGAAGTTCATGAGA AGAAGATTCTTGTGGTTTTAGATGATATTGATAACGTAGACCAAGTTGATACCTTAATTGGTGAAAGAAGTTGGTATCGT GAAGGAACTCTTATAGTCATCACTACCAGAGATGAAGAGATTCTCAATAGACTCTCTGTGAGCTTAAAGTATGAGGTCAA CTGCTTGAGTGAAGAGCAAGCAGTGAAGCTGTTTAGTTACCATTCACTACGAAAAGAAAAGCCAACAGGGAGTCTATTGA AGTTATCTGAGAATATCGTCAAGATAACTGGATTGTTGCCACTAGCTGTTGAAGTGTTTGGTTCTCTTTTTTATGACAAA AAGGAAAAGGAATGGCTAGTTCAGCTAAAGAAGCTGGAATATACTAAACCAAATGGTCTTCAGGACGTTCTGAAGCTGAG TTTTGACTCTTTAGACGATGAAGAGAAGAAAGTCTTCCTCGACACTGCGTGTCTCTTTCTTAAAATGGACATGACGAAAG AGGAAGTTCTCGACGTACTGAAAGGATGTGGGTTTACCGCTGAGGCTGCTCTCAATGTTCTTAGACAGAAGTCTCTTGTC AAGTTCTTAGCAGACAATACTCTTTGGGTGCATGATGAGATTCGAGACATGGCAATGCAGATGGTCCGTGAAGAAAGCCT TGAGGATCCTGGAAAGCGAAGTAGACTCTGGGACCGTGGTGAAATCATGAGTGTATTGAACAGTATGAAGGGAACATCAT CCATCAGAGGAATTGTATTAGACTTCAAGAAGAAGTTTGTGGGGCAGAGCAATCTACAAAACAATCCAGGCCTCAGCTCT GCGTTTATTTACCTGAAGAATGTATTTGTACGATGTCCTACAAGCTCTGAGATCACCATTCCTGTAGAGCATTTTGCGCC AATGAAGAAGTTGAGACTTCTTCAGATTGATCATGTGAAACTGCAAGGAAATCTTGAACTCCTTCCATCTGACCTCAAGT GGATACAGTGGAGAGGCTGCCCATTAAAAGACGTTCCAGCGAGTTTTCTTTCTAGGCAACTCGCAGTTCTTGATCTTTCA GATAGTGGAATAAGACGAGTCCATACTTTGGGAAACAAAAAGGAGGATGAGAAGTTGAAGGTATTAAATTTGCGTGGTTG CCACAGCTTAGAAGCCATTCCTGACTTATCAAAACATATAGCCTTGGAGAAGCTTGTTTTCGAGGGATGCAAGCTTCTCG TGAAGGTTCATGCATCAGTTGGTAATTTGAGAAAATTACTTCATCTGGATTTAAGAAACTGTCCAAACCTCACTGAGTTT CTTTTGGACTTTTCTGGACTGAAGCATCTTGAAAAGCTTTACCTCTCTGGCTGTTCAAGTCTGAGTGTGTTACCAGAAAG CATCGGTTACATGCCGTGTTTGAAAGAGCTTCTTCTTGATGAAACTGCGATAAAGAACCTACCGGGATCAATTTTTCGCC TCGAAAAACTTCAAAAGCTTAGCTTAAAGAGTTGCAGATCTATTCAAGAGCTATCTATGGGGATAGGAACATTGACATCA CTGGAGGAGCTAGATCTTAGTAGCACTTCACTGCAAAATCTTCCGAGTTCTATTGGATATTTAAAAAATCTCCAGAAGCT GCATGTGATGCACTGTGCGTACCTTACTAAGATTCCTGAGACTATCAATAAGCTTATATCATTACAAGAGCTGATCATCG ATGGAAGCGCAGTGGAGGAGCTACCTCTAAGCCCTGGCTCACTGCCATGTTTGACTATTTTTTCAGCAGGAGTATGCAAA TCGCTGAAAGAGGTTCCTAGTTCAGTTGGGTGGTTAAACTCTCTTCTCCAACTTAAGCTGGATAGTACACCGATTACAAC TCTACCAGGAGAGATAAGTCACTTGCGGTTTATTCAGAAACTTGAGTTGAGGAACTGCATATCATTGAAATCTCTGCCTA GTACGATTGGAGATATGGATACACTCCATAGCTTATACCTTGAAGGCTCTAACATTGAAGAACTGCCGGAAGGATTTGAA AATCTGGAGAACCTAGTATTACTCCAAATGAACAAGTGTAAGAATCTCAAGAAGCTTCCTAACTCATTTGGAGACTTGAA ATCTCTTGGCCATCTCTACATGGAGGAAACTATGGTCATGGAGTTGCCAGAAAGTTTTGGAAACCTCTCAAACTTAAGGG TATTGAAAATGATGAAGAGTGATGATGCTCCAGGTACATGCGAAAAATCTAGTTTTGTAATACCAAACTCTTTCTCAAAT CTCTTGTTGCTTGAGGAACTGGATGCTCGTGGTTGTGGAATATCTGGTGAAGTCCCTGATGTTTTTGAGAAGCTTTCTTC TGTGAAGATACTGGACCTGGGAAATAATAAGTTTCACAGTCTTCCGTCTAGCCTCAAGGGGTTATCAAGTCTTAAAGAAC TTTCATTGTGCGACTGTCAAGAGCTCAAGTGTGTTCCTCCTCTTCCATGTATCTTGGAGATGCTAAACTTGGCAAACTGC TTTGCATTGGAGAGTATATCCGACCTATCAGAGCTGACGATGTTGCGTGACCTCAATCTCACAAACTGTAAGAAAGTGGA TGATGTTCCAGGCATAGAGAACTTGAAGGCTCTGAAACGGTTAGAAATGAGCGGATGTAATTTCCAAGTGCACCGTTGA |
| AA seq | Len:1173 aa MEAAVLSKAHRLKYDFFLSFRGEDTRHTVVKRLYDALHVKEKALIFRDNEGMERGQAIYPSLIAGIEDSAASLVVFSPCY ADSHWCLDELATLCDVSSSLDRPMIPIFYKVDPNHVRKQSGHFVQDFETHAIRFTKEEMQRWRGAMKIVGNLPGFIYRGG ENEDEMIGLVVKRVLAEENNTPEKVGEYTVGLDSRVDDLMNLVDFKSSCDVQILGLYGMGGIGKTTLAKAFYNKIVDNFK EQRVFISNVRERSSGQDGLVNLQKTLITELLGLVPEIEDVDRGRDMIREEVHEKKILVVLDDIDNVDQVDTLIGERSWYR EGTLIVITTRDEEILNRLSVSLKYEVNCLSEEQAVKLFSYHSLRKEKPTGSLLKLSENIVKITGLLPLAVEVFGSLFYDK KEKEWLVQLKKLEYTKPNGLQDVLKLSFDSLDDEEKKVFLDTACLFLKMDMTKEEVLDVLKGCGFTAEAALNVLRQKSLV KFLADNTLWVHDEIRDMAMQMVREESLEDPGKRSRLWDRGEIMSVLNSMKGTSSIRGIVLDFKKKFVGQSNLQNNPGLSS AFIYLKNVFVRCPTSSEITIPVEHFAPMKKLRLLQIDHVKLQGNLELLPSDLKWIQWRGCPLKDVPASFLSRQLAVLDLS DSGIRRVHTLGNKKEDEKLKVLNLRGCHSLEAIPDLSKHIALEKLVFEGCKLLVKVHASVGNLRKLLHLDLRNCPNLTEF LLDFSGLKHLEKLYLSGCSSLSVLPESIGYMPCLKELLLDETAIKNLPGSIFRLEKLQKLSLKSCRSIQELSMGIGTLTS LEELDLSSTSLQNLPSSIGYLKNLQKLHVMHCAYLTKIPETINKLISLQELIIDGSAVEELPLSPGSLPCLTIFSAGVCK SLKEVPSSVGWLNSLLQLKLDSTPITTLPGEISHLRFIQKLELRNCISLKSLPSTIGDMDTLHSLYLEGSNIEELPEGFE NLENLVLLQMNKCKNLKKLPNSFGDLKSLGHLYMEETMVMELPESFGNLSNLRVLKMMKSDDAPGTCEKSSFVIPNSFSN LLLLEELDARGCGISGEVPDVFEKLSSVKILDLGNNKFHSLPSSLKGLSSLKELSLCDCQELKCVPPLPCILEMLNLANC FALESISDLSELTMLRDLNLTNCKKVDDVPGIENLKALKRLEMSGCNFQVHR* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | Leucine Rich Repeat |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |