Names & Information
Knowledge of BnaC05G0213500ZS:
| Gene Name | BnaC05G0213500ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA09g29600D [Brassica napus] |
| Best Hit (SwissProt) | TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 |
| NT seq | Len:3756 nt ATGATAGGTCTTTTGGTGAAGAGAGTTTTATCCGAAGTGAGCAATACGCCAGAGAACGTTGGAGAATACACAGTTGGTTT GGAGCCACGTGTCGACTACTTGATGAATCTGGTCGATGTTAAATCCACCTCTGACGTTCAAATCCTGGGGCTTCACGGTA TGGGTGGTATTGGGAAGACGACCCTTGCAAAAGCCTTTTATAACACGATCGTTGCAGACTTCGAGCATAGAGTTTTCATC TCAAACGTTAGAGAAAGATCATCAGACCATGACGGCTTACTCAATCTACAAAAGAGTTTGATCAAGGGGCTTCTCCGTTC GCAACCTGAAATAGAAGATGTTAACCGAGGGAGAGACAAGATAAGAGAGAGCGTTTATGAGAAGAAGATTCTTGTGGTTT TAGATGATGTTGATAAGGTAGACCAAGTTGATGCGCTGGTTGGTGAAAGAAGTTGGTATAGTGAAGGAAGTCTTATAGTC ATCACTACAAGAGATGAAGATATTCTGAGTAAGGTCTTAGTGAAGCAAAAGTATGAAGTCAGGTGCTTGAATGAGGGGCA GGCCTTGAAGCTGTTTAGTTATCATTCACTGAGGAAAGAAAAACCAACAGAGAGTTTACTAGAGCTGTCCAAGAAGATTG TCAAGATATCAGGACTATTACCACTAGCACTTGAAGTGTTTGGATCTCTTTTGTATGACAAGAAGGAGGCAAAAGAATGG CGAACTCAGCTAGAGAAGCTCAAAAACACTCAACCAGGCAATCTTCAGGATGTTCTGAAGCTGAGTTTTGATTCTTTAGA CGATGAAGAGAAGAATGTGTTCCTGGATATTGCTTGTCTCTTTCTTAAAATGCAGATAACGAAAGAAGAAATCGTCGACG TACTGAATGGTTGTGGGTTTAACGCCGAGGCTGCTCTCAGTGTCCTCAGACAGAAGTCTCTTGTTAAGTTCTTGTCAGAC GAGAATCTTTGGATGCATGATCAGATTCGAGACATGGGAAGGCAGTTAGACCTTAAAGAAACCCCTGGGGATGCTAGAAT GCGGAGTAGACTCTGGGACCGTGCTGAAATCATGACTGTATTGAACAATATGAAGGGAACATCATCCATCCAAGGAATTG TACTTGACTTTAAAAAGAAGTTAGCAACGGATCCAAATGCAGAGAACATTGCGTTGGGGAATCTACATGACAATCCAGGC ATCAGAGCTGTGTTTAGTTACCTGAAGAATAAGTTTGTAGGATTTCCAGCAGAGGAAAAGCCAAAAAGCTCTGAGATCAC CATTCCTGTAGAGCCTTTTGTACCAATGACAAAGTTGAGACTCCTTCAGATTAATCATGTGGAGCTGGCAGGGAATCTTG AACGTCTTCCATCTGAACTCAAGTGGATACAGTGGAGAGGCTGTCCATTAAAGGAGGTACCACTGAATCTTCTTGCTCGG CAACTTGCTGTTCTTGATCTTGCAGAGAGTGCAATAAGACGCATCCAGAGTTTGCACATCGAAGGGGTGGATAGAAACTT GAAGGTTGTAAACTTGCGTGGTTGTCACAGCTTAGAAGCCGTTCCTGATTTATCAAACCATAAGTCCTTAGAGAAGCTTG TCTTTGAACGATGCATGCGTCTGGTGGAAGTTCCAAGTTCAGTTGGTAATTTGGGAACATTACTTCACCTGGATTTCAGA AACTGTCCAAACCTCACTGAGTTTCTTATGGATGTTTCTGGACTGAAGAGTCTTGAAAAGCTTTACCTCTCTGGCTGTTC AAATCTGAGTGTCTTACCAGAAAACATTGGTTTCATGCCATGTTTGAAAGAGCTTTTCCTTGATGAAACAGGGATAAAGG AGTTACCAGGCTCTATTTTTCGCCTCGAAAATCTTCAAAAGCTTAGCCTAAAGAGCTGCAGATCTATTCAAGAGCTTCCT ATGTGCATAGGAACATTGACATCACTGGAAGAACTAGATCTGAGTAGCACTTCACTGCAAAATCTTCCGAGTTCTATTGG AAATTTAAAAAATCTCCAGAAGCTGAGTTTGATGCACTGTGCATCCCTTTCTAAGATACCTGACACTATTAAGGAGCTCA AATCATTGAAGAAACTATTCATCTACGGAAGTGCAGTGGAGGAGCTGCCTCTAAGCGTAGGCTCACTGCCATGTTTGACT GACTTTTCAGCAGGAGGATGTAAACTTCTGAAGCATGTTCCAAGTTCCATCGGTGGATTAAACTCTCTTCTCGAACTTGA GTTGGATTGGACACCAATTGAGACTCTACCAGCAGAGATTGGTGACTTGCACTTTATTCAAAAACTTGGGTTGAGGAACT GCAAGTCTCTGAAGGTTTTGCCCGAATCAATAGGAAACATGGACACACTCCATAGCTTGTTCCTTGCAGGCTCTAACATT GAGAAACTGCCTGAAACTTTTGGCAAGCTTGAAAACCTAGTCTCACTCCGAATGAACAACTGTAAAATGATCAAGAGGCT TCCTGAATCATTTGGAGACTTGAAATCGCTTCACAGTCTGTACATGAAGGAAACTTCGGTGGTAGAGCTGCCAGAAAGTT TTGGAAACCTCTCGAATCTAAAGGTATTGAAGATACTGAAGAAGCCTCTCTTTAGAAGTTCTCCAGGTACAAGTGAAGAA CCTACTTTTGTTGAAGTACCAAACTCTTTCTCAAACCTCTTGTCACTTGAGGAGATAGATGCTAGAGGTTGGGGGATATG GGGTAAAGTCCCTGATGATCTTGGGAACCTTTCATCTCTCAAGAAACTAGAACTGGGGAATAACTATTTTCACAGTCTTC CATCTAGTCTTGAGGGGTTATGGAATCTTAAAGTATTTACATTGTATGACTGCCAAGAGCTGAAGTGTGTTCCCCCTCTT CCTTGGAAACTGGAGAGGCTTAACCTGGCAAACTGCTTTTCATTGGAGAGTATATCCGACCTTTCAAAGCTGCAGATCTT GGATGAGCTCAATCTCACAAACTGTGGGAAAGTGGATGATGTTCCAGGCCTAGAGCACTTGAAGGCTCTGAAAAGATTAT ACATGAGCGGCTGCAACTCTAGGTTCTCTGTTGCAGTCAAGAAAAGACTTTCCAAGGCTTCTTTGAAAATGATGGTGAAT CTGAGCTTACCTGGGAACAGAATCCCTGACTGGTTCTCACAAGGCCCTATCACATTCTCACCTCAACCCAACAGAGAGCT CAGAGGCGTAATCCTGGCAGTTGTTGTGGCTCTTAACCAAGACTGCATAGATGACTACCAGCTGCCTGATGTGATGGAGG TGCAAGCACAAATTCTCAAACTTGATTCACCCTTATACACCCACACATTGCACCTCTCTGGAGTTCCAAGAACAAGTGAT GATCAGCTCCACATCTGCCGATACTCAACTTTGCATCCGATGATTTGGACGTTTAAAGATGGGTACACCATACAAGTCGT TAAACGGGAACCACCAATCAAACAAGGCGTTGAGCTAAAGATGCATGGGATTCATTTTGTTTATGAAGGGGATGATGATT TTAAAGGTGAAGAACATGTATTGAACGAGACACAGCTCACTGTCTCTCAGAAGCTTGCCAATTTTTTCAGGTCGTTTGAA GAAGGTGAAGCCAGCTCAGAAAGTGAATCTGCTTATACTCACAACAGATGGTTCAGTACTTCAGTCTCTCTCTTACTGTT ATGGGTGGTGTTGATAAGTTTTGTTGGATGGTGTTTTTTTTTTTTTTTTTTGATCAAAGTTGGATGGTGTTTTTAA |
| AA seq | Len:1252 aa MIGLLVKRVLSEVSNTPENVGEYTVGLEPRVDYLMNLVDVKSTSDVQILGLHGMGGIGKTTLAKAFYNTIVADFEHRVFI SNVRERSSDHDGLLNLQKSLIKGLLRSQPEIEDVNRGRDKIRESVYEKKILVVLDDVDKVDQVDALVGERSWYSEGSLIV ITTRDEDILSKVLVKQKYEVRCLNEGQALKLFSYHSLRKEKPTESLLELSKKIVKISGLLPLALEVFGSLLYDKKEAKEW RTQLEKLKNTQPGNLQDVLKLSFDSLDDEEKNVFLDIACLFLKMQITKEEIVDVLNGCGFNAEAALSVLRQKSLVKFLSD ENLWMHDQIRDMGRQLDLKETPGDARMRSRLWDRAEIMTVLNNMKGTSSIQGIVLDFKKKLATDPNAENIALGNLHDNPG IRAVFSYLKNKFVGFPAEEKPKSSEITIPVEPFVPMTKLRLLQINHVELAGNLERLPSELKWIQWRGCPLKEVPLNLLAR QLAVLDLAESAIRRIQSLHIEGVDRNLKVVNLRGCHSLEAVPDLSNHKSLEKLVFERCMRLVEVPSSVGNLGTLLHLDFR NCPNLTEFLMDVSGLKSLEKLYLSGCSNLSVLPENIGFMPCLKELFLDETGIKELPGSIFRLENLQKLSLKSCRSIQELP MCIGTLTSLEELDLSSTSLQNLPSSIGNLKNLQKLSLMHCASLSKIPDTIKELKSLKKLFIYGSAVEELPLSVGSLPCLT DFSAGGCKLLKHVPSSIGGLNSLLELELDWTPIETLPAEIGDLHFIQKLGLRNCKSLKVLPESIGNMDTLHSLFLAGSNI EKLPETFGKLENLVSLRMNNCKMIKRLPESFGDLKSLHSLYMKETSVVELPESFGNLSNLKVLKILKKPLFRSSPGTSEE PTFVEVPNSFSNLLSLEEIDARGWGIWGKVPDDLGNLSSLKKLELGNNYFHSLPSSLEGLWNLKVFTLYDCQELKCVPPL PWKLERLNLANCFSLESISDLSKLQILDELNLTNCGKVDDVPGLEHLKALKRLYMSGCNSRFSVAVKKRLSKASLKMMVN LSLPGNRIPDWFSQGPITFSPQPNRELRGVILAVVVALNQDCIDDYQLPDVMEVQAQILKLDSPLYTHTLHLSGVPRTSD DQLHICRYSTLHPMIWTFKDGYTIQVVKREPPIKQGVELKMHGIHFVYEGDDDFKGEEHVLNETQLTVSQKLANFFRSFE EGEASSESESAYTHNRWFSTSVSLLLLWVVLISFVGWCFFFFFLIKVGWCF* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | - |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |