Names & Information
Knowledge of BnaC05G0333400ZY:
| Gene Name | BnaC05G0333400ZY |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC09g23580D [Brassica napus] |
| Best Hit (SwissProt) | Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1 |
| NT seq | Len:2412 nt ATGTTACAGATGGAGATGGAGAAACCAGACAAATTGAATCGAAGCGTCTCTCCAATGGAGTCTCTTCCTTCTTCCTCTGC AGAGCTCGACGTGTTTCTCAGTTTCAGAGGCTTTGACACACGCAACAACTTCACCGGCCATCTCCAAAAAGCCCTCCGCC TTAGAGGAATAGACTCCTTCATCGACGACAAACTCCGCCGAGGAGACGACCTCACTGCTCTTTTCGACAGAATTGAGCAT TCAAAGATTGCCATCATAGTCTTCTCCAAGAACTACTCGAACTCCGCGTGGTGCCTCCGAGAGCTTGTTAAGATCCTAGA GTGCAGGGACAGAAACCAGCAGCTGGTGATACCAATCTTCTACAAAGTAGACAAGTCCGAATTAAAGAATGTTCCAAAGA AGAGTTTTACTGAAGTTAAGGAGGAAGAGACTTCAACGTGGGAAGCTGCACTGACCACAGCATCCAACATCTCCGGCTAT GTAGTCAATGAGTTCAGTACGTCTGAAGCCAAACTTGTGGACGAGATTGCTGTTGACACATTCAAGAAACTGAATGATTT GGCCCCCATTGGCAACGAAGGTCTGGTGGGAGTAGACTCACGTCTAGGGACTCTAGAAAAGCTTTTATGTTGCGATGAGG TGGACTCTGTTCATGTCATTGGCATTATTGGGATGGGCGGAATTGGTAAAACTACTCTTGCTGATTGCTTGTATGGACGA ATGCGAGGCCAGTTCGACGGTAGCTGCTTTCTTACAAACATCCGTGAAAACTCGAGTAGAAGCGGGTTAGAGTCTTTGCT GCAGAAACTCTTCTCCACGTTACTGAATGATAGAGATCTAGAGATCGGAGCTCCTGGAAATGCACATGAGAGGTTTGAGC GTCGGCTTAAGAGCAAGAGGCTGCTTATTGTGCTTGATGATGTGAACGATGAGAAGCAGATAAGGTATCTAATGGGGCAC TCCAAATGGTATCAGGGAGGAAGTAGAATCATCATAACTACTAGAGATAGTAAACTAGTCGAGGCGGTCAAGGGTCGAAA ATATGTGCTCCCTAAACTGAATGATAGAGAAGCCCTGAAGCTCTTTTGCTTGAATGCATTTAACGACTCTTGCCCTTTAA AAGAGTTTCAAAGTTTGACAAATATGGTTCTGGATTATGCTAAGGGACACCCTTTGGCGCTTAAGGTGTTAGGGTCTGAT CTTTGTGAGAGGGATAATCAGTACTGGGAAGATAAATTGGATAGGCTGACAAGTAAATCACATGGAGATATCTATGAAGT TCTGGAAACAAGCTATGAGGAGCTTAGCATTGAGCAGAAGAATGTTTTTCTGGATATTGCATGTTTCTTCAGATCAGAGA AAGTGGACTACGTGAAAAGCCTCCTCAACAGTCATGGTGTGGATGTGTCTAGCGTGATAGAGGATCTACTTGACAAATGT TTGATTACTCTTTCTGATGATCGCATCGAGATGCATGACATGTTGCAGACTATGGGCAAAGAGATTAGCTTAAAAGCAGA AACCATCGCAATAAGAAACTCTAGGTGGCTATCACCACATGGCACCCCGTTTCAGTCGCATATCAGACTATGGGATAGTG ACTATATTTGTTACCTTCTAACTAAGGGCTTGGGAACTGACATGATAAGAGGAATTTTCCTGGACACATCAAAACAAGGA GCAATGCGGCTAAGCGCCAAAGCTTTCAAAGGGATGTGCAATCTCAAGTACCTGAAAATTTATGATTCTCGTTGCTCACG TGGATGTGAAGTGGATTGTAAAATTATCCTACGTAAGGGGCTTGATTTCCTTTCTGATGAGCTTACATATCTACACTGGT ATGGATGCCCACTACAGAGTCTCCTTCTGAACTTTGACCCCAAGAACCTTGTAGACCTTAAGCTTCCATATAGTGAGTTA GAAGACATTTGGGACCAAGACAAGTGCTCCGGCAAATTCGATAACCAAGATGGTTCCTTCACAGGATTTGACTTTACGCT GGCCGGCTGGAACGAACCCTGTGGATCGCTTAGCCATGAACCAAGAAAGCTTACTTCTGACCATGTTTTTATGGGATACA ACAGTTGCTTCTACGTCAAGAAACTCCATGGAGAGAGTAGCAGCTGCTGTTACACAAAGGCTTCTTTCGAATTCTATGCA ACGGATGATGAAAGGAAGAAGAAGCTCGAGACTTGTGAGGTGGTCAAATGTGGGATGAGTTTAGTGTATGTTCCTGATGA TGATACTTGTATGTTGTTGAAGAAGACGAATCTGGTTCAGTTGAGTACGAAGACCAAACCAAGCTGTTCCTACGGTCTTG ATGATGTCAGACTCAAGAGAGGACGATGCCAGGTTGGTGGTGGTGATGAAGAAGCAGATTGTAAGAGAACGAAAGAGAAG ATTTTGGTGTGA |
| AA seq | Len:804 aa MLQMEMEKPDKLNRSVSPMESLPSSSAELDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDKLRRGDDLTALFDRIEH SKIAIIVFSKNYSNSAWCLRELVKILECRDRNQQLVIPIFYKVDKSELKNVPKKSFTEVKEEETSTWEAALTTASNISGY VVNEFSTSEAKLVDEIAVDTFKKLNDLAPIGNEGLVGVDSRLGTLEKLLCCDEVDSVHVIGIIGMGGIGKTTLADCLYGR MRGQFDGSCFLTNIRENSSRSGLESLLQKLFSTLLNDRDLEIGAPGNAHERFERRLKSKRLLIVLDDVNDEKQIRYLMGH SKWYQGGSRIIITTRDSKLVEAVKGRKYVLPKLNDREALKLFCLNAFNDSCPLKEFQSLTNMVLDYAKGHPLALKVLGSD LCERDNQYWEDKLDRLTSKSHGDIYEVLETSYEELSIEQKNVFLDIACFFRSEKVDYVKSLLNSHGVDVSSVIEDLLDKC LITLSDDRIEMHDMLQTMGKEISLKAETIAIRNSRWLSPHGTPFQSHIRLWDSDYICYLLTKGLGTDMIRGIFLDTSKQG AMRLSAKAFKGMCNLKYLKIYDSRCSRGCEVDCKIILRKGLDFLSDELTYLHWYGCPLQSLLLNFDPKNLVDLKLPYSEL EDIWDQDKCSGKFDNQDGSFTGFDFTLAGWNEPCGSLSHEPRKLTSDHVFMGYNSCFYVKKLHGESSSCCYTKASFEFYA TDDERKKKLETCEVVKCGMSLVYVPDDDTCMLLKKTNLVQLSTKTKPSCSYGLDDVRLKRGRCQVGGGDEEADCKRTKEK ILV* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | TIR domain |
| KEGG | hypothetical protein; K19613 leucine-rich repeat protein SHOC2 (A) |