Names & Information
Knowledge of BnaC06G0173300ZS:
| Gene Name | BnaC06G0173300ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: putative disease resistance protein At4g11170 [Brassica rapa] |
| Best Hit (SwissProt) | Disease resistance protein RML1A OS=Arabidopsis thaliana GN=RLM1A PE=3 SV=1 |
| NT seq | Len:3243 nt ATGGCGTCTTCTTCCTGTTTGACTCAGATCAGAAGATATCATGTCTTCCCTAGCTTCCATGGCCCAGATATTCGTAGATC ATTCCTCAGTCATTTACATAAACACTTTGCAAGCAAAGGGATCACAATGTTCAAGGATCACGAGATCGAGAGAGGCCACA CGATTGGACCTGAACTCGTACAAGCCATTAGAGAATCGAGGGTCCTGATGGTAGTGCTCTCAAAGAAATACGCTTCTTCA AGCTGGTGTTTAGATGAGTTGGTTGAAATCTTGAAATGCAAAGAAGATCAAGGGAAGATAGTGATGACGATTTTTTACAA AGTTGATCCGTCTTGTGTTCGGAAACAAAACGGGGATTTCGGAAGCATTTTTGAGAAAACTTGTGAAGGGAAAACTAAGG AAGTTAAGCTGAGATGGACCAAAGCTTTAACTGATGTTGCAAACATAGAAGGGGATTATTCTCTAAATTGGGATGATGAA GCTGAGATGATCGAAAAAATTGCCATTGATGTTTCAAACAAAATCAATGTTACACCATCAAATGAATTTGAAGGGCTGGT GGGAATGGAAGCTCACTTGAGAAAACTAAACGCTTATTTACACCTTGAGTGTGACGAAGTAAAGATGATTGGAATCCAAG GTCCAGCTGGAATCGGTAAGACAACTATTGCTAGAGCTTTATTCAACCAACTCTCTGCTGATTTTCAATTTAAATGTTTT CTCAAGAACCTCAAGGAAAAATATGAAACATTTGGTATGGATGACCATGATTCGAAATTGTATTTACAAACCCAGCTTCT ATCCAAGATTTTGAACCAAAGGGATATGAAGGTACATCATCTAGGCACAATAAAAGAATGGCTACAAGACCAAAGAGTCC TTATAGTTCTTGATGAGATAGATGATTTGGAACAACTAGACGCCTTGGCTAGAGAACCATCTTGGTTTGGTTTGGGAAGC CGAATTATCGTTACTACTGAAGATAAAAAGATACTGAAGGCACATTGGGTAGATGATATCTACCATGTGGATTATCCATC AGAAGAAGAAGCTCTTGAGATCCTACGTCTATATGCTTTCAAGCCAAATTCTCTATGGGATGGTTTTGATGAGCTTGCAA AGAAATTAACAAATCTTTGTGGTAATCTTCCACTAGGTCTTCGTGTTGTGGGTTCATCTTTACGTGGTGAGAATAGGAAC GAGTGGGAAGGTCAAGTTTCTAGGCTAGAATATAGCCTTGATAGGAAAATTGAGAATGCGTTAAGAGTGGGATATGACAA ACTAATGAAGAAAGAACAGTCTCTATTTCTTCACATTGCGTTCTTCTTTAACAATGAAACCATTGATCATCTGACAACAA TGCTAGCTGATAGTGACTTGGATGTCAGAAATGGGTTGAAGACCCTTTCCGAGAAATCTCTCGTGCATATATCAACCAAT GGGTTGATCACAATGCATTGTTTACTCCAAAAATTGGGGAGGCAAGTAGTTTATGAACAATCTAATGAACCTGGAAAGCG TCAATTTTTAGTAGAAGCCGAAGAGATTCGTAATGTGCTTGAAAATGAAACTGGCACTGGATCTGTCTTAGGTATATCAC TTGATATGTCTAAGATAAGTGAGTTTTCTATCAGTGGGCGAGCCTTTGAAGGAATGCGTAATCTCCGGTTCCTAAGAGTG TATGGAAGACATTTTAGTACATTGCAGATGTTAGAAGACATGGAATATTTACCTCGTCTAAGGTTACTCCATTGGGATTC ATACCCAGGAACACTTCTTCCTCCAACATTTCGACCTGAATGTCTAGTCGAATTCAATATGGCATATAGTAAGCTCGAGA AGCTTTGGCAAGGTATCCAGCCACTTACAAATCTCAAGGATATAGATTTGGGACATTCCAAAAACTTGATAGAGATCCCC GATCTTTCAAAGGCTACTAGCCTCAAGACATTGACACTTACATCTTGCACAAGTTTGGTGGAGCTTCCCTCTTCAATTAG AAACCTACACAAACTAAAAAAGCTGATGATGATGGGGTGCGCAAAGCTACAAATCATTCCAAAAAATATCAACTTGGCAT CTCTTGAGGAAGTAGACATGAGTGATTGCTCACTGCTGCGAAGTTATCCAGATATTTCTATGAACATCAAGGACCTCGAT GTTGGAAATACAAAGTTGGACGTTCATCCATCAATTGTTGAACGTCTGCCTCGTCTTGAGTGGTTTCGTATAGGCAGCAG AAACCTCAAGAGATTAACACATGTCCCCGAAAGTGTAACACATCTAGACCTAAGCAATAGTGATATAGTGAGGATTCCAG ATTGCGTCATAGGCCTTTCTAGACTAGAAAGTCTTTTCGTCTTCAAGTGTAGAAAACTCATGTCACTACAAGGTCTTCCC TCTTCGCTCAAGTACATAGATGCGACCGATTGTGGATCCCTCGAGAGAGTGTGTATCTATTTCAATGATCCAATGAGGGG CCTCATGTTCCAATATCCAATCAGGGAACTCATGTTCCAAAACTGCTTGAAACTGGATGAAGAGACAAGAAGAGAAATCA TACAACAATGGGTTTACGAATACGTATGTTTACCGGGTAAAGATATTCCTGCGGAGTTCACTAACAAAGCTAAAGGAAAC TCCATAACCATCCCTATGGTTACTTTCTCTTCATCCTCAAGATTCAAGGCATGTCTAATGTTTTCGCCAATCAAGTACTC ATATCTTGATATAACTTGTCGTCTAATAACCGAAGGAGGTGTCATCATCATGGAGATTAAATGGGATTCAATGAATGTTT CTCATTTTCTTACGGAGCATCTGTTCGTATGTGGTGGTAACTTGGTTCAAGAAACACGTAAAGTGGATGTGCAAGCGACC AAGATTTTTTTTGAATTCAGTTGCGTGGATAACCTCAAGATTCTTGAGTGTGGTGTACAGATCTTGAGTGAGGAAACAGA GAGTTGTAATGGTAGCGAAGTGGATTACTTCGATACTGGAGGAAGCCCTGACAACCACACGTATGGAGATGAATATTATG AAATGGATGATGAAGTCGCTCAGTCTGAGTATAAATATAATTGGAGTTGGCTTAAGAAGTTTTGGTATGGAGAAGAATAT GAAAGAGACGACGATGATAAAGAAGAATATATAAACAACCATTATGGTTGGAATACGGCCATGATGATGAAGGTGTTTGT GGTTGGTATGTCTTTGCTTTTGCTATATCTTGTTATCACATAA |
| AA seq | Len:1081 aa MASSSCLTQIRRYHVFPSFHGPDIRRSFLSHLHKHFASKGITMFKDHEIERGHTIGPELVQAIRESRVLMVVLSKKYASS SWCLDELVEILKCKEDQGKIVMTIFYKVDPSCVRKQNGDFGSIFEKTCEGKTKEVKLRWTKALTDVANIEGDYSLNWDDE AEMIEKIAIDVSNKINVTPSNEFEGLVGMEAHLRKLNAYLHLECDEVKMIGIQGPAGIGKTTIARALFNQLSADFQFKCF LKNLKEKYETFGMDDHDSKLYLQTQLLSKILNQRDMKVHHLGTIKEWLQDQRVLIVLDEIDDLEQLDALAREPSWFGLGS RIIVTTEDKKILKAHWVDDIYHVDYPSEEEALEILRLYAFKPNSLWDGFDELAKKLTNLCGNLPLGLRVVGSSLRGENRN EWEGQVSRLEYSLDRKIENALRVGYDKLMKKEQSLFLHIAFFFNNETIDHLTTMLADSDLDVRNGLKTLSEKSLVHISTN GLITMHCLLQKLGRQVVYEQSNEPGKRQFLVEAEEIRNVLENETGTGSVLGISLDMSKISEFSISGRAFEGMRNLRFLRV YGRHFSTLQMLEDMEYLPRLRLLHWDSYPGTLLPPTFRPECLVEFNMAYSKLEKLWQGIQPLTNLKDIDLGHSKNLIEIP DLSKATSLKTLTLTSCTSLVELPSSIRNLHKLKKLMMMGCAKLQIIPKNINLASLEEVDMSDCSLLRSYPDISMNIKDLD VGNTKLDVHPSIVERLPRLEWFRIGSRNLKRLTHVPESVTHLDLSNSDIVRIPDCVIGLSRLESLFVFKCRKLMSLQGLP SSLKYIDATDCGSLERVCIYFNDPMRGLMFQYPIRELMFQNCLKLDEETRREIIQQWVYEYVCLPGKDIPAEFTNKAKGN SITIPMVTFSSSSRFKACLMFSPIKYSYLDITCRLITEGGVIIMEIKWDSMNVSHFLTEHLFVCGGNLVQETRKVDVQAT KIFFEFSCVDNLKILECGVQILSEETESCNGSEVDYFDTGGSPDNHTYGDEYYEMDDEVAQSEYKYNWSWLKKFWYGEEY ERDDDDKEEYINNHYGWNTAMMMKVFVVGMSLLLLYLVIT* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |