Names & Information
Knowledge of BnaC06G0273700GG:
| Gene Name | BnaC06G0273700GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA07g22910D [Brassica napus] |
| Best Hit (SwissProt) | Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana GN=At1g72960 PE=2 SV=2 |
| NT seq | Len:3522 nt ATGAGCACGATGTTGGAAAAAGTATCGTGCTTTAAAACAAAAACCAAGTCCAAAGGACCATTCGAATCGAGGTCATCATT GTGTTCGTCAACTAGTCCTGAAAAATACGAAGTCTTTTTGAGCTTCAGAGGCGCAGATACTCGCAAGAACTTCGTCAGTT TTCTGTACAAGGAGTTAAAGGCCAAAGGCATTCGAACTTTCAAAGACGACAAGTCACTGGTGTGTGGTCGTCAGATTGCA CCAGAGATTCTACAAGCCATCAAAGGGACGAAAATCGCCGTGGTGGTGGTCTCTCCGACTTATCCAGCTTCCTACTGGTG TCTGGAGGAGCTCGTAATGACTTTGAAACAAGAGAAAGAAAATGTACTCACTGTGGTGCCTATTTTCTACGAGGTTGAAC CTTTTGACCTGAAGAGACAGACGGGAAAACTGGTGGAGCAGTTCAAGAAACACGAGAGGAGACATAGCATTGAGAGAGTC AATTCGTGGAGGGATGCGTTGACCAGATTGGCTACTCTATCCGGCGACTGTTCAAAGAGTTGGGAAAATGACGCGACGCT GGTCGATAGAATTACTGAGAGAGTATCAGAGATGTTGTCCACGGTAACACTAAGCAATGGTGTTCAAGTAAGTGGGATTT GGGGAAGAGGAAACAAGGGAAGATCAGCACTGGCGAGACACGTTTACCAAAACATATCAACCAACTTTGACGCTCATTGT TTTCTCGAAGACGTGAGGAGGATCTCACTATATCTACAAGAAGAGCTTCTTTCCAATATGAAAGGAGAAGGTTTAAGCAC AAGGAGCTCTCACATGTGTTTGGACGCGATCAAAGCAAGGCTCGGGAACAAGAAGATTCTGCTAGTGGCTAACCACGTGG ACAGTATCGAAAAGTTAGAAGCCCTTGCTGATGAATTTGGTTGGTTTGGTCCAGGGAGTAGAATCATCATAATCACACAA GATAAGCAATTGCTTAGTTCATGGGGTGTGAAGAGTGTCTACGAAGTTGAGCTCTTGAGATGCTGTGAAGTTGGTAAGCT CTGGAGGTCTGAAGCCTTCAAACAGAAAGACGATCATGTGGATGCTGAACTGTCTACTTACCGACCCAAGAATCTTCCTG ATAAGAGCGAGGGAAATTGTTCTGTACAGCTTATTGATGGAGATGGTACATACAATGTCTCTGGCATAGATCACTTCATC AAAGAGGTGAAGCTAGGAGAGTGTGGCCTCTCCTATGCTGTTGTCTCCATTATGGGTCCTCAAAGCAGCGGGAAGAGTAC CTTGTTGAATAATTTGTTTGGAACAAACTTTATGGAGATGGATGCATTTAAGGGAAGGTCTCAGACCACAAAAGGTATCT GGCTTGCAAGATGTGCCGGTATAGAGCCTTGCACCCTTGTAATGGACTTGGAGGGCACTGATGGAAGAGAGCGAGGAGAG GATGATACTGCATTCGAGAAACAAAGTGCTCTTTTTGCTCTTGCCATCTCAGATATCGTCTTGATCAATATGTGGTGTCA CGATATTGGCCGTGAACAAGCTGCAAATAAACCTCTCTTGAAAACTGTCTTTCAGGTTATGATGCGGTTGTTTAGTCCAC GTAAAACAACAATGTTGTTTGTAATACGAGATAAAACCAGGACGCCATTGGAAAACTTAGAGCCTGTCTTAAGGGAAGAT ATTCAGAAGATATGGGACTCTGTTCCAAAGCCTGAGGCACACAAAGAAACTCCTATGAGTGACTTCTTCAACGTTGAAGT TGTTGCTCTTTCCAGTTATGAGGAGAAGGAAGAACAGTTTAAAGAGCAGGTTGCTAGTTTGAGACAACGGTTCATGCATT CTATTGCACCGGGTGGTCTTGCTGGAGACAGAAGAGGAGTGATTCCAGCCTCAGGTTTTGCATTTAGTGCTGATCAAATC TGGAGAGTCATCAAAGAGAATAAGGATCTTGACCTTCCTGCTCACAAGGTCATGGTAGCTACTGTCCGGTGCGAAGAAAT CTCAAATGAGAAGTTTGCCCATTTCATTACAAACGAGGACTGGCGCAAACTTGATGAGGAGGTGCAAGCTGGTCCAGTGT CTGGTTTTGGAAAGAGGCTTACTTCTATTCTTGGTTCTTGCTTATCAGAATATGATGGGGAGGCTACATTCTTTGATGAA GGTGTCAGATCATCAAAGAGACATCAGCTTGAAGAAAAGCTTCTCCAACTTGTGAATCCAGCGTTTCAAGATGTGTTGGG ACACATAAGATGGGGGATGCTTGAGAAGTTTAAGGCTTCTTTTGATAAAGCTTTAGAAATTGGTGAAGGGTTCTCTTCAG CTTCCACTACTTGGCTCAAGGCTTGCATGGACCAGTTCGATGAAGAGTGCGCAGGTGCCATCATTGAACAAGCTAATTGG GACACAGCCAAAGTAAGGGAAAAGTTAGTCCGTGATATTGAGGCTCATGTTTCCTCTGTGAGGACTTCCAAGTTATCTGA ACTTACCAGTCAATACGAGACAAAGCTTCACCAAGCATTGTCAGAACCGGTGGAAGCTTTGTTGGAAGGAGCGAGTGATC AGACGTGGACAACAGTGAAGAAGCTTCATGGACGTGAAACTGAAACTGCTGTTTCTGGATTCAGTAGTGCATTAGCTGCT TTTGATATTGAAGAAGAAACAAGAGAAAAAATGGTGAAGAGTCTTCAGGAGTATTCAAGAGGTGTCATAGAATCTAAGGC AAAGGAAGAAGCTGGAAGGGTTTTGATGCGTATGAAAGATAGGTTTGCTACAATCTTCAGCAATGATGCTGATTCAATGC CACGAGTTTGGACTGGAAATGAAGATCTTCGAGCAATTACTAAAGCAGCTAGATCAGCTTCCTTGAAGTTGCTCTCTGTA ATGGCTGTAATGCGATTGGGTGATGAAACCGATAACATTGAGAAGACACTAACTGTTGCTCTTTTGGATTCAACACCGTC TAAAAAGAGCATTACAGCATCTGATCCATTGGCTTCAAGCACTTGGGATGAGATTCCATCATCAAGAACTTTGATCACAC CAGTCCACTGTAAATCTATATGGAGACAGTTCAAGACAGAGACAGAATATACAGTGACTCAAGCCATATCTGCACAGGCA TGGTTACTTTACTCACAAGAAGCGAATAAGCGTGGTAGTAACTGGTTACCCCCTCCATGGGCTATTTTTGCATTGATCAT ACTTGGATTCAACGAGTTCATGACTCTTCTAAGAAACCCTCTCTATCTTGGTGTCTTGTTTGTTGGTTTTCTACTTCTGA AAGCACTCTGGACGCAACTGGATATCCCTGGCGAGTTCCGCAATGGTGCACTTCCAGGGATCATATCAATATCAGCAAAG TTTGTTCCCACAATCATGAACCTTGTCAAGAACCTTGCTGCACAAGGAGAAGCTCCTCCTGCAGCTAATCCAGAGAACCG TCGTCCTAGTAACAACACTTCTTCAAGTGCTTCCTCATCAGATAATCCAATAGAGCACAAAAGTGCCTCAAAGACAGATT AA |
| AA seq | Len:1174 aa MSTMLEKVSCFKTKTKSKGPFESRSSLCSSTSPEKYEVFLSFRGADTRKNFVSFLYKELKAKGIRTFKDDKSLVCGRQIA PEILQAIKGTKIAVVVVSPTYPASYWCLEELVMTLKQEKENVLTVVPIFYEVEPFDLKRQTGKLVEQFKKHERRHSIERV NSWRDALTRLATLSGDCSKSWENDATLVDRITERVSEMLSTVTLSNGVQVSGIWGRGNKGRSALARHVYQNISTNFDAHC FLEDVRRISLYLQEELLSNMKGEGLSTRSSHMCLDAIKARLGNKKILLVANHVDSIEKLEALADEFGWFGPGSRIIIITQ DKQLLSSWGVKSVYEVELLRCCEVGKLWRSEAFKQKDDHVDAELSTYRPKNLPDKSEGNCSVQLIDGDGTYNVSGIDHFI KEVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFGTNFMEMDAFKGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE DDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLRED IQKIWDSVPKPEAHKETPMSDFFNVEVVALSSYEEKEEQFKEQVASLRQRFMHSIAPGGLAGDRRGVIPASGFAFSADQI WRVIKENKDLDLPAHKVMVATVRCEEISNEKFAHFITNEDWRKLDEEVQAGPVSGFGKRLTSILGSCLSEYDGEATFFDE GVRSSKRHQLEEKLLQLVNPAFQDVLGHIRWGMLEKFKASFDKALEIGEGFSSASTTWLKACMDQFDEECAGAIIEQANW DTAKVREKLVRDIEAHVSSVRTSKLSELTSQYETKLHQALSEPVEALLEGASDQTWTTVKKLHGRETETAVSGFSSALAA FDIEEETREKMVKSLQEYSRGVIESKAKEEAGRVLMRMKDRFATIFSNDADSMPRVWTGNEDLRAITKAARSASLKLLSV MAVMRLGDETDNIEKTLTVALLDSTPSKKSITASDPLASSTWDEIPSSRTLITPVHCKSIWRQFKTETEYTVTQAISAQA WLLYSQEANKRGSNWLPPPWAIFALIILGFNEFMTLLRNPLYLGVLFVGFLLLKALWTQLDIPGEFRNGALPGIISISAK FVPTIMNLVKNLAAQGEAPPAANPENRRPSNNTSSSASSSDNPIEHKSASKTD* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | NB-ARC domain |
| KEGG | animal HSPA9 nucleotide-binding domain protein; K03283 heat shock 70kDa protein 1/8 (A) |