Names & Information
Knowledge of BnaC06G0274300GG:
| Gene Name | BnaC06G0274300GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: putative disease resistance protein At4g11170 [Brassica rapa] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3120 nt ATGGATTCCTCGTCCTTATTCTTGTCAACTCGAGTCAGGAGGTATGATGTCTTCCTCAGCTTCCGAGGGGAAGACACTCG GCGCAACATTGTCAGCCATTTGTACAAAGCTCTGTCTCACGAGGGCATCTTTACTTTTAAAGACGATCGGATGCTCGAGG CAGGTGACAACATTTCAGACCAACTCATTGAAGCCATTAGAACTTCGTGGTTTGCTGTTGTAGTCATCTCAGAGAACTAT GCTACCTCAAAATGGTGCTTGGAGGAGCTTCGCTTGATAATGGAGCTTCATGGTGCCAATTATATTCAAGTCGTTCCTAT GTTCTATGGAGTCGAACCTACGGACGTGAGAAACCAGACAGGAAGCTTCGCGGCTTCGTTTCAAAATTTCGAAGATACAG CGCCGGAGAGGGTTTCCCAGTGGAGAAGAGCTCTCAACCAAGTCGGTCATCTCTCAGGCTTTCATTCCACGACATGGCTG GATGAGGCAGAATTGGTAGACAAGATAGTTCAAAGTGTCTCAAGTGGACTCCTTAGGATAAGGCCGATCAGTGACGTCAA TTTAGTTGGGATCGAAGCACACATGGTGAAGATGCATTTCCTTTTGAATATGGGGTCTAAAAATGAGGTTATCATGATAG GAATATGGGGCATGGGAGGTGTAGGCAAAACCACCATTGCCAAGTGTCTCTATGAACGATTTTCAAATCAATTTCCAGCT CATTATTTCATAGAAGACATTAAGGACAAGAGACCATCCTACTTGCAGGAAAAATTCCTCTTTAGCATCACTGGTCAACA TATTGATTTACAGAGGGTTGTATCAGGATCACAAGAAATAAAGGCAAGACTCGAGCACCAGAAAGTACTTCTGGTGCTTG ATGGTGTGGATAAAGTAAGGCAGATGCATGCACTCGCAAAAGAGACGAGCTGGTTTGGTCAAGGGAGCCGAATCATCATA ACCACACATGACAGGGGTTTGCTTACTTCCTGTGGAGTAAACCATATACATGAAGTTAAGTGCTTGGACGATAAGGATGC CCTCCAAGTATTTAAAAAATCAGTCTTTGGAGGAAAAAGTCCTCCTTCTGGTGAATTTGAGCAACTCTTCATCAGAGCCT CGCTGCTGGCTCACGGCCTTCCATCTGCCCTTGTGGCTTACGCCTCACATCTTAGTGAAAACACTACCATAGAGAGGTGG GAAGATGAATTACGTCTCCTTGAAACATCGCCTCACAAGAATGTGGTGGATATCCTGAGAAATAGCTATGATGGTTTAGA TAATAATGACAAGATTGCTTTCCTTCATGTTGCATGTCTCCTGAACGGATACCCTTTCAGCCATGTCACTTCTCTTCTTG ATGCTGGTTCTTCTCGGATACATCACTTAAGGAAAAAGTCCATGATCAGCATATCAACAAATGGATGCATAAACATGCAC TTCTTGGTCGTACAAACAGGCAAGGAAATTGTGCGCCAAGAATGTAAGAATAGACCTTTCAGACAAAGGTTCCTATGGGA TGCTGACGATATCTATAACATCCTGGATAACAAAATAGGTACAGACGAAACTGAAGGGTTGATACTACACATGTGTAAGA TGCGTGATACGTTAACTATGAGCAATACAGTATTTGAAGCTATGCATAGTATCAAGTTTCTCAAGTTCTTCCACCACTTG AGTGATATAAAGCCCAACTTGCAGCTCAAGTCAGATGGATTTTATTTTCCCCCGGATCTTAGGCTACTACATTGGGATGC ATGTCCGTTGAAAACCTTACCATCCAGGTTCAGACACCACTACCTTGTTGAAGTCAATCTCCGATACAGCAACCTTAAGA GCCTTTGGGATGACACGTTGATCCTTCATAATCTACAGAGACTAGATGTGACAGGCTCGAAGAATCTGATAGAACTTCCA AATCTTTCAACAGCCAGGAACTTTGAGGAGTTGATTGTAAGAGGGTGCAAGAAGCTACAGAAAATTCCAGAGTCCCTAAA AGGGTTACTTCAGCTCACAAAACTAAACGCAAGCCACTGCGATAGCCTTACGAGTTTCTCGTTCAAAGTTGACTACATCC TGAGTGGCGACAACTGGGAAGTATTACTAAAATTTCCGGATGAGACAGTGACTATGGGTTATCTTGAAGATCTATCAATC GACGGTCAAATACACTTAGTATCAATGGACCTTAGCGGGTTTACCGACCATATCTCCTTTACTTTCAAACAACATATCCC GGATGAATTTTTGATGATGAAAGAGAGCACATCTCATCATCTAATGTCAGATTCCGAGGGCTTACATTCACTCAACATCA AGAAGTTCAGGTACAGAGAGTCCAATGCTGCTTTCAGCTGTAAAAGCTTTTTAGCCTTTGCCAATTTAACAGAGCTTAAG CTGGTCAACTTGAACACTAGAAAAATCCCAGAAGACATTAATAGCTTGCTAACCCTAGAGAAACTGGACCTTAGTGGAAA TGATTTTGTGTCTCTACCCGCAACCATGGGAGAACTGCCCAAGTTGAAATATCTCAGCCTTCAAAACTGCCGCAGAATCA AATCACTGCCACAACTTGCTCAGGTGGAGACGCTCATACTTTCTGACTGTGTGAAACTCAGATCGTTGTTGAAACTTCAT GTTGAGGAAGCATGGGCCACAAGGTACTGCTTGCTTGAGCTTTGGCTCGACAACTGCAAGCATATTGAAACATTGTCAGG ACAACTAACTCATTTCACCAAGTTAGCATATTTAGACCTCAGCAGGAATAATTTCTTGAGACTGCCTCAAAGTATTAGGG AGCTTTCATCCTTGGAAACTCTCTACCTCAACAACTGCAAGAAACTCATATCAGTGGAGGATCTTCCACATAGCGTCAAG TATCTCTATGCACACGGCTGCGATTCCCTGGAAACAATTTCCATTTCCACAAATCACTCGATCAAACACCTCGATCTTTC CACTTGCCCCCGCCTGAAACGACTAGAACACGAGCATCTAATGGATCTGTTAATAAATGATGCACATATTCAAGAGGTAA GCTTACTGCAATCGACCTGTTTTGTTTCTTTTCAGATCCATCTGTTTTTATGTTATGATTGCACAATCTTTCTTTCGTAG |
| AA seq | Len:1040 aa MDSSSLFLSTRVRRYDVFLSFRGEDTRRNIVSHLYKALSHEGIFTFKDDRMLEAGDNISDQLIEAIRTSWFAVVVISENY ATSKWCLEELRLIMELHGANYIQVVPMFYGVEPTDVRNQTGSFAASFQNFEDTAPERVSQWRRALNQVGHLSGFHSTTWL DEAELVDKIVQSVSSGLLRIRPISDVNLVGIEAHMVKMHFLLNMGSKNEVIMIGIWGMGGVGKTTIAKCLYERFSNQFPA HYFIEDIKDKRPSYLQEKFLFSITGQHIDLQRVVSGSQEIKARLEHQKVLLVLDGVDKVRQMHALAKETSWFGQGSRIII TTHDRGLLTSCGVNHIHEVKCLDDKDALQVFKKSVFGGKSPPSGEFEQLFIRASLLAHGLPSALVAYASHLSENTTIERW EDELRLLETSPHKNVVDILRNSYDGLDNNDKIAFLHVACLLNGYPFSHVTSLLDAGSSRIHHLRKKSMISISTNGCINMH FLVVQTGKEIVRQECKNRPFRQRFLWDADDIYNILDNKIGTDETEGLILHMCKMRDTLTMSNTVFEAMHSIKFLKFFHHL SDIKPNLQLKSDGFYFPPDLRLLHWDACPLKTLPSRFRHHYLVEVNLRYSNLKSLWDDTLILHNLQRLDVTGSKNLIELP NLSTARNFEELIVRGCKKLQKIPESLKGLLQLTKLNASHCDSLTSFSFKVDYILSGDNWEVLLKFPDETVTMGYLEDLSI DGQIHLVSMDLSGFTDHISFTFKQHIPDEFLMMKESTSHHLMSDSEGLHSLNIKKFRYRESNAAFSCKSFLAFANLTELK LVNLNTRKIPEDINSLLTLEKLDLSGNDFVSLPATMGELPKLKYLSLQNCRRIKSLPQLAQVETLILSDCVKLRSLLKLH VEEAWATRYCLLELWLDNCKHIETLSGQLTHFTKLAYLDLSRNNFLRLPQSIRELSSLETLYLNNCKKLISVEDLPHSVK YLYAHGCDSLETISISTNHSIKHLDLSTCPRLKRLEHEHLMDLLINDAHIQEVSLLQSTCFVSFQIHLFLCYDCTIFLS* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |