Names & Information
Knowledge of BnaC07G0189500ZS:
| Gene Name | BnaC07G0189500ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC07g14550D [Brassica napus] |
| Best Hit (SwissProt) | TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 |
| NT seq | Len:2955 nt ATGATCGACCGTGTGATTAGAGACATTCTCCAAAGGCTGCCTAGTTCATACTTGCATTTACCAACACACGCCGTTGGTAT TAGATCACGTGTAAGCCGTATCGAGAAGCTAATGTGCTTTGGTTTGGATGATGTTCAGATTATCGGAATCTGGGGAATGG CTGGGATCGGCAAAACAACCTTAGCCAAGGCTACATTTAACGAATTCTCACATCGTTTTGAAGGAAAAAGTTTCCTAGAA AACTTTGGAGATTACTTGAAGAAACCTAAAGGCAAGTTTCATCTTCAGAAAAAGCTTCTTTCGGATATCTTAAGGAGGGA CGACGCAGTGTTCAACAACATGGATCATGCTGTGGAACAAAGATTTCGCAACAAAAGGGTATTCCTTGTCATTGATGATG TTGACGACATGGTTCAACTTCATTCAGTCGGAATAGATTTGAGAGGCTTTGGTCCCGGAAGCAGGATAATCATTACAACC AAGAACAAGCATCTGTTAGAGCAGCTTGACGTAGAAAATATATATTCACCCAAGGAACTTAACCATGATGAATCTCTTGA ACTTGTAAGCTGGCATACATTTAGAAGCAATGACCCTCCTACCAAGTTTCTCCAGCTGTCGAAAAACTTGGTTGATTACT GTGGAGGACTACCCTTGGCTGTGGAAGTCTTGGGTGCTTTTCTCTACAAGAGAAGCGTTTCGGAGTGGGAAAGCACGTTG GAATCGTTGAAAACAATACCTGATGATAACATTCAAGCAAAGCTTCAGATCAGCTTTGATGCGCTAAACGCCGCACAGAA AGACATATTCTTGGATATATCCTGCTTCTTCATTAGGATGGATAAAGACTACGTATGTTGCATATTGAATGGATGCAGAT TATATCCTGGCATAGGACTCAGTGTGTTAAAGGAGAGGTGTCTCATTACGATCCATGATAACAGGCTGATGATGCATGAC TTAGTACGAGACATGGGAAGATATATTGTCCAAGGAACATCTCTGAAGAACTGCGAGAGATGGAGTAGATTGTGGGACCG TGATCATGTTATAGATGTATTGGCAAACTATTCTGGAACAGATGCAACTGAAGGACTTAGTTTGAAGGCTGAAGTCACAA CGGCTGTTGATAACTTGGAGGCTAAGGCCTTTTCAAATCTACGTAAGCTGAGACTATTACAGCTCAGTCATGTAGCACTC AACGGAAGCTATGAAAACTTTCCAAAAGGTTTACGATGGCTTTGTTGGGTTGGGTTTCCAGAGGAGTCTGTCCCGATAGA CTTACATTTGAGAAGCTTAGTTGTCATGGACATGCAGAAAAGCAACCTTAAACGACTTTGGATTAATGATCAAAAGCCTC ATGAGTACCTTAAGGAGCTAAAATACCTTGACCTCAGTCAGGCTATCCAGCTTACAGAGACTCCGGACTTCTCTTATCTC CCAAACCTTGAGAAGCTGTTCTTGGTAAACTGTCAAAGATTGGTTAAAGTTCACAAGTCGATAGAGGTTCTTCAAGGAAG CCTGATTCTATTAAATCTGAGTGGTTGCATCAAGCTTGGTGAACTTCCGTTGGAGCTCTATACGTTGAAGTCGCTGGAAA CCCTTATTCTCTCGGGATGCTCGCAGCTTGAGAGATTGGATGATGCTTTAGGTGAACTGAAGTCCTTGACAACTCTTAAA GCTGATGATACTGCTTTGACGCAAATCCCATCCTCGAGTGGTCAACTGAAGAAACTGAAAGAGTTATCTCTTCATGGCTG CATGGAGTTATGGAAGGACAGACGCTACACCCATTCTGATGAAAGCTCTCAAGTGGCTCTGTTAAGTCCCCTCTCATTGA ACGGTTTAAACTGCTTAAAGACTTTGCGTTTAGGTTCCTGCAATCTGCCGGATGAGCTGGTTCCTGCAAATCTTGGGAGT TTGTCATCGCTCGAAGAACTTGACCTCCAAGGCAACCACTTTCGTAACTTGCAAACGGATTTTGCTGGTCTTTTAAGTCT ACAGATTCTTAAGCTGGATAATTGCTCACGACTTCGATCCATGTTTAGTTTGCCAAAGAAGTTGAGGTCTTTCTACGCGA GAAACTGTACCGTGTTGGAAAGAATTCCAGACTTACAAGAGTGCTCGGTGTTGCAATCATTGCATCTCACAAACTGTTAC AATCTTGTTGAGACACCAGGGCTGGAGGGACTGAAAACAGTTGGAGTCATCCACATGGAAATGTGCAACGGCATACCATA TTCTCACAGAGAAAGAATCATGCAGGGGTGGGCTGTTGCTGCCCATGGGGGGATTTTTGTCCCGGGATCAAGCCTTCCAG ACTGGGTTAATTTCAAGAATGAGACACGTTCAATCTCTTTTACTGTCCCTGAACCAACTTTGAATTCTGATCTGGTCGGG TTTACCGTGGGGACAACATACGTGAGTCAGGAAGATGATGTGATGTATGCATACTCTCCAAAGATCACATTGAAGAATCA AACCAAGGGAGATGGATGGAGTCGTAATCTAGCAACGGATCACATTCGTATGTACCGTGAAGAACACATCTGGCAAGGGT TCTTTTCAAATGAAGATTTCTTGTTAGAAACAGGGGATCAAGTGCAAGTTTCTGTGGATTTTGGAGATAAAGTCACCATT CTTAAGACAGGACTAACTCTTGCTTACAGAAAAGTCATTGAAGTCCCAAATGAACAACTGACTGAAACAGATGATGGAGT TGATAATGAACTAAATGAAAACCAAAGAAGACCTCCCAGGAAAGTGGGAATGTGTTTAAAGACACTTCTGGGGGCGTTTT GTTTGTTGGCATTCATTTTTGTTCTTGAAAAGCATGGTAGATCCCTGAGCCCCCACAACCACAATCGCAGGGATTCTGAT TTTGATTTGGTATTGGTGGTTCTGAATCTTAATAGAACGCGTGCTAGTGTTATTCCAAAACGGTTTGTACGGTAG |
| AA seq | Len:985 aa MIDRVIRDILQRLPSSYLHLPTHAVGIRSRVSRIEKLMCFGLDDVQIIGIWGMAGIGKTTLAKATFNEFSHRFEGKSFLE NFGDYLKKPKGKFHLQKKLLSDILRRDDAVFNNMDHAVEQRFRNKRVFLVIDDVDDMVQLHSVGIDLRGFGPGSRIIITT KNKHLLEQLDVENIYSPKELNHDESLELVSWHTFRSNDPPTKFLQLSKNLVDYCGGLPLAVEVLGAFLYKRSVSEWESTL ESLKTIPDDNIQAKLQISFDALNAAQKDIFLDISCFFIRMDKDYVCCILNGCRLYPGIGLSVLKERCLITIHDNRLMMHD LVRDMGRYIVQGTSLKNCERWSRLWDRDHVIDVLANYSGTDATEGLSLKAEVTTAVDNLEAKAFSNLRKLRLLQLSHVAL NGSYENFPKGLRWLCWVGFPEESVPIDLHLRSLVVMDMQKSNLKRLWINDQKPHEYLKELKYLDLSQAIQLTETPDFSYL PNLEKLFLVNCQRLVKVHKSIEVLQGSLILLNLSGCIKLGELPLELYTLKSLETLILSGCSQLERLDDALGELKSLTTLK ADDTALTQIPSSSGQLKKLKELSLHGCMELWKDRRYTHSDESSQVALLSPLSLNGLNCLKTLRLGSCNLPDELVPANLGS LSSLEELDLQGNHFRNLQTDFAGLLSLQILKLDNCSRLRSMFSLPKKLRSFYARNCTVLERIPDLQECSVLQSLHLTNCY NLVETPGLEGLKTVGVIHMEMCNGIPYSHRERIMQGWAVAAHGGIFVPGSSLPDWVNFKNETRSISFTVPEPTLNSDLVG FTVGTTYVSQEDDVMYAYSPKITLKNQTKGDGWSRNLATDHIRMYREEHIWQGFFSNEDFLLETGDQVQVSVDFGDKVTI LKTGLTLAYRKVIEVPNEQLTETDDGVDNELNENQRRPPRKVGMCLKTLLGAFCLLAFIFVLEKHGRSLSPHNHNRRDSD FDLVLVVLNLNRTRASVIPKRFVR* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |