Names & Information
Knowledge of BnaC07G0226500ZY:
| Gene Name | BnaC07G0226500ZY |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Brassica rapa] |
| Best Hit (SwissProt) | Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1 |
| NT seq | Len:2781 nt ATGGCGGTCCCGTTGCTAACGAAGAAGGTCGTGAAGAAGAGGTCTGCCAAATTCATCAGGCCCCAGAGTGATCGCAGAAT CACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGATTCCAGGGTGAGGAGGAAGTTCAAAGGTGTCACCTTGATGC CCAATGTTGGTTACGGTTCTGACAAGAAGACCCGTCACTATCTCCCCAACGGCTTCAAGAAGTTCGTTGTTCACAACTCT GCTGATCTCGAGTTACTCATGATGCACAACAGGACTTACTGTGCGGAGATTGCTCACAATGTATCAACAAAGAAGAGGAA AGCCATCGTGGAGAGAGCTTCCCAGCTTGACATCGTCGTTACCAACAGGCTTGCTAGTTGCTACAGAACCTTCTCAGCTG CCACAGAGCTCCGGAGTCGCGAAGTTTCGATATGTAATCACTTGCAAAACCGTAGACTCGACGAGGCTCGAGATGTTTTT AACCAGGTTCCGTCTCCTCGTGTGAGTCTCTACACCAAGATGATCTCTGGATACGCGAGGAGCAACAGATTGGTTGATGC GTTGAATCTGTTCGACGCAATGCCTGTGAGAGATGTTATCTCGTGGAATTCGATGATAAGTGGCTGTGTGGAGTGTGGGG ATATGGATACCGCAGTGAAGCTGTTCGATGAAATGCCTGAGAGAAGCGTTGTTTCCTGGACAGCGATGTTGAATGGGTTT CTTAGGTCGGGGAAGGTTGAGCAAGCGGAGTGGTTGTTTTATCAGATGCCTGTGAAAGATACTGCAGCTTGGAACGCCAT GGTTCATGGGTATTTACAGCTTGGTAGAGTAGACGATGCTTTGGAGTTGTTTGAGCGAATGCCTCGGAAGAATGTGATTT CTTGGACCACAATGATCTGTGGGTTGGACCAGAATGAAAGGAGTGGAGAAGGTCTTGTTTTGTTCAAGAACATGCTGGGT TGTTGCATTAAGGCGACTTCAAGAACATTCACTTGTGTAATCACTGCTTGTGCAAATGCTCCAGCGTTTCATATGGGTGC ACAAGTTCATGGTTTCATCATCAAGTTGGGGTTTTTATCTGAGGAATACATGTCTGCTTCGCTTATAACGTTTTATGCAA ACTGCAAAAGAACAGAGGATTCAAGGAAAGTTTTTGACGAGAAGGTTCGTGACCAAGTTGCTGTGTGGACTGCTCTATTG TCAGGTTATAGTCTGAACAAAAAACATGAAGATGCCTTAAGTGTTTTCTCAGAGATGTTGAGAAACAGTATCTTACCGAA TCAGTCAACATTTGCTAGCGGATTAAACTCTTGCTCTGCTTTGGGATCATTGGATTGGGGTAAGGAGATGCATGGCGTTG CAGTGAAACTTGGTTTAGTAACTGATGCCTTTGTGGGTAATTCTCTAGTTGTCATGTACAGTGACTGTGGAAATGCAAAT GATGCCGTTATGGTGTTTACTGACATCTTAAAGAAGAGCATTGTCTCTTGGAATTCAATAATTGTTGGCTGCGCGCAGCA TGGACGTGGTAAATGGGCCTTTGTCATATTCGGTCAAATGATTAGATTAAACAAAGAGCCAGATGAGATTACTTTCACTG GCTTGCTCTCTGCTTGCAGCCACTGCGGGTTTCTACATAAAGGAAGAAAGATTTTCGAATACATGTCAAGAGGACCAAAT CACATCGATAGAAAGATTCAACACTACACTTGTATGGTAGATATCTTGGGAAGAAGCGGGGAACTGAAAGAAGCAGAGGA GCTTATCGAGAGCATGCTTGTGAAACCTAATGAAATGGTTTGGTTGGCTTTACTCAGTGCTTGTAGGATGCATCATGATG TTGACAGAGCCGAGAAAGCTGCTGCTGCCATTTTTCAGCTGGACTCAAAATCAAGCGCTGCTTATGTCTTGTTGTCTAAT ACATATGCTTCTGCTGGTAGATGGTCGAATGTATCGAAATTGAGAATAAAGATGAAGCAGAAGGGGATAATGAAGAAACG TGGGAGCAGTTGGGTTGTGTTTAAAGGGAAAAAGCACGAGTTTTTCTCAGGTGATCGACCAGATAGCTTGAGAATATATG AGAAGTTGGAGTTTCTGAAAGAAAAGTTGAAGGAGCTTGGCTATGTACCTGATTATAGATCTGCTTTACATGACGTTGAA GACGAACAGAAGGAAGAGATGTTGTGGTATCACAGTGAGAGGCTTGCTATTGCGTTTGCGTTGGTTAATACAGTCGAAGG AAATGCAGTCACAGTTATGAAGAATCTACGAGTTTGTGAAGATTGTCACGCAGTGATTAAGCTGATCTCAAGAGTTGTGG GACTGAAGGAGCATTCTGAGCGTGAATTAAAAGGATGTGGCATGCTGCTTCCCGAGAACGGTCAAGCCCTGGGTAACCGA CCTTGTAATGGAAACATTCTTCACAAGTTGGTGGAGGAAACACAAGCAACAATGCTGACTTTGGAGGCCATGACACCGAA CACAGCCAAGAGTGTGGAGACAGCGCTATTACGTGAAAACATTGAAAAAAGTGAGGAACAGAACGGAGACTTTGGGAAGA TCTTTAAGAAGACTTGCCAGAACCAAACAAAAGAAGTGAAAAATCAGTGGCAGAAAGCGTTGACTGATGTAGCTAATATC CTCGGATTTCATTCTGAGAACTGCGCTGGTGAAGCTAAGATGATTGAAGACATCACCAATGATGTTCTGGGTAAACTGAA TGTAACCCCATCAGAAGATTTTGGGAACTTTGTTGGCCTCAAAGATCATATGAAATTATGA |
| AA seq | Len:927 aa MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPNGFKKFVVHNS ADLELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDIVVTNRLASCYRTFSAATELRSREVSICNHLQNRRLDEARDVF NQVPSPRVSLYTKMISGYARSNRLVDALNLFDAMPVRDVISWNSMISGCVECGDMDTAVKLFDEMPERSVVSWTAMLNGF LRSGKVEQAEWLFYQMPVKDTAAWNAMVHGYLQLGRVDDALELFERMPRKNVISWTTMICGLDQNERSGEGLVLFKNMLG CCIKATSRTFTCVITACANAPAFHMGAQVHGFIIKLGFLSEEYMSASLITFYANCKRTEDSRKVFDEKVRDQVAVWTALL SGYSLNKKHEDALSVFSEMLRNSILPNQSTFASGLNSCSALGSLDWGKEMHGVAVKLGLVTDAFVGNSLVVMYSDCGNAN DAVMVFTDILKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLHKGRKIFEYMSRGPN HIDRKIQHYTCMVDILGRSGELKEAEELIESMLVKPNEMVWLALLSACRMHHDVDRAEKAAAAIFQLDSKSSAAYVLLSN TYASAGRWSNVSKLRIKMKQKGIMKKRGSSWVVFKGKKHEFFSGDRPDSLRIYEKLEFLKEKLKELGYVPDYRSALHDVE DEQKEEMLWYHSERLAIAFALVNTVEGNAVTVMKNLRVCEDCHAVIKLISRVVGLKEHSERELKGCGMLLPENGQALGNR PCNGNILHKLVEETQATMLTLEAMTPNTAKSVETALLRENIEKSEEQNGDFGKIFKKTCQNQTKEVKNQWQKALTDVANI LGFHSENCAGEAKMIEDITNDVLGKLNVTPSEDFGNFVGLKDHMKL* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0003735 |
| Pfam | DYW family of nucleic acid deaminases |
| KEGG | pentatricopeptide repeat-containing protein, putative; K15271 ATP-dependent DNA helicase HFM1/MER3 [EC:3.6.4.12] (A) |