Names & Information
Knowledge of BnaC08G0175900ZY:
| Gene Name | BnaC08G0175900ZY |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: disease resistance protein RPS5-like [Brassica rapa] |
| Best Hit (SwissProt) | Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2 |
| NT seq | Len:2679 nt ATGGGCGGTTGTTTCTCTGTCTCGTTTCCATGTGATCAAGTGGTGAATCAATTTTCTCAGTGGTTATGCCTCAGGGGGTG TTATATCCACAACCTTCCTGAGAATATCGTTGCTCTTCAGCATGCCATGGCAATGCTCACGGCAAAGCTAGACGATGTGC TGAGAACAGTGGGCAGAGAGGAGTTTACAGGGCGTCAACAAAGGATTTCCCAAGTTCAGGTATGGCATGCTAATGTCCTA ACCACCAAAAAAAAAGTTGACGATCTGCTTAGTACTTATGAGGCTGAGCTTCAAAGGTTGTGCCTATGTGGTTTTTGCTC CAAAGATTTAAAACTGAGCTATCTTTATGGGAGAAGTGTTCGCCTGATGTTGAGAGAAGTTGAGAAACTGAGTTCTCAAG GAGGATTTGATGTGGTGGTCGAGGCATCTACGTTTGGTGAGGTGGATGAGATCCCTATTCAACCCACCATTTTTGGTCAG GAAAGAATGCTTGAAAAGGCATGGACGCTTCTCATGGAAGATGGATCAGGGATGTTGGGTCTGTACGGTATGGGAGGAGT GGGGAAAACCACACTGCTCACACAGATCAACAATAAGTTTTCTGAAATAAGTGACAGGTTTGAAGTTGTGATATGGGTTG TTGTGTCTAAAAGTGCAACAGTCCGTAAGATTCAAAGAGACATAGCTCAAAAGGTTGGCCTTGTGGAGATGGGTTCGGGA GAGAAAGACGAGAACCAGAGAGCCCTTGACATCTACAATGTTCTTAGAAGAAGAAAGTTTGCGTTATTGTTGGATGACAT ATGGGAGAAAGTGGATTTAAAAGCGGTAGGAGTCCCGTACCCAACTAGAAATAATGGATGCAAGGTAGCATTCACCACTC GCTCTCGAGATGTGTGTGGCCGCATGGGGGTTGATGATCCAGTGGAAGTTAGCTGTTTGCAACCCGACGAGTCATGGGAT CTGTTCCAAAGGACAGTTGGGGAAAACACACTGGGAAGTCATCCAGACATTCCAGAACTTGCGAGAAAAGTCGCTAGGAA ATGCCGTGGCCTACCGTTAGCACTCAATGTTATCGGTGAAACCATGGCATGCAAAAGGACAGTACATGAATGGTGTCATG CGGTTGACGTTTTGACATCATCTGCCACAGAATTTTCAGGTATGGAAGATGAGATCCTTCCTGTTTTGAAGTATAGCTAT GATAATTTAAGTGGGGAGATGGTGAGATCATGCTTCCTCTATTGCTCTTTGTTTCCTGAAGATTATCATATTGATAAAGA GAGGCTGGTAGAGTACTGGATAGGTGAGGGGTTCGTAAGTGAAAAGGAAAGTAGAGAGAGGACATTAAACCAAGGTTATG AGATCGTTGGTACACTTGTCCGTGCATGTTTGTTGATGGAGGAAAGAAAGGATAAATCATACGTGAAAATGCATGATGTG GTTCGTGAGATGGCGTTGTGGATATCATCTGATTTTGGTAATCAAAAGGAGAGATGTGTCGTGCGAGCTGGCGTTGGGTT ACGTGAAATACCAAAACTCAAGGACTGGACTACTGTGAGAAAGATGTCTTTGATGAATAACGGGATTGAAGAGATCTTTG ACAGTCACGAGTGTGGTGAGCTTACAACTCTATTTCTACAAAAAAACGCGTTTGTAAAGATCTCGGGTGAGTTCTTTCGA TGCATGCCTCATCTAGCTGTTTTGGATCTATCAGAGAATCACAGTCTTGAGGAACTACCAGAAGAAATATCAGAGTTGGG CTCTTTGAGATATTTGGACGTGTCATATACATGTGTAAATCAGCTACCGGTTGGGTTATGGGAATTGAAGAAGTTAATAC ATCTCAATCTGGAACACATGAGCAGACTAGGGAGTATTTTAGGGATATCAAGTTTGTGGAATTTGAGGACATTAGGACTA CGAGGTTTGGTGCTAGATATGAGGCTAGTGAATGAGCTAGAACTCTTGGAACATCTACAAGTTGTAACCATAGATATATC ATCGGCTTCGGTTGTGAAGCCATTGTTATGGTCTCATAGGTTGGTCGTGTGTATCAGAGAGGTTGATTTTAAGTACCTTG AGGAAGAATCAATGAGAGTCTTGACTTTGCCAACTATAGTCAATCTCCGTAGGCTCAGCATTAAAAGGTGTGGAATGAGG GAGATAGAGATAGAGAAGACAACTTCTTCGTCATCATCATCATGGAACAAAATTCACACAGCTCCATACTTCTCAAACCT CTCTAAAGTCTTTATAACTAAATGTCATGGTCTTAAGGATTTGACGTGGCTGTTGTTTGCTCCAAACCTTGCTTTTCTCC AAGTTAGTTTCTCAAGGCAATTAGAGGATATAATTAACCAAGAGAAAGCTGCCAGTGTTGAGAATGCAGCTACCATTGTT CCTTTTAGGAGACTAGAAACGCTGCACCTATCTGCTTTACGTGGGCTCGAGAGAATATATTGGAATGCTCTGCCGTTTCC ATGTCTGAAAGTTATCCACGTTGAAAAATGTTGGAAGCTAAGAAAGCTTCCATTGGATTCAAATAGTGGCGCCGGGGGTA AAGAACTGGTCCTAAGTTATGGAGACAGAGAATGGATAGAAAAGCTTGAATGGGAGGACCAAGCCACTCGAGTTCGTTTC TTAACTTCGTGCAGGTGGCACTGGCGAGCTACACAATGA |
| AA seq | Len:893 aa MGGCFSVSFPCDQVVNQFSQWLCLRGCYIHNLPENIVALQHAMAMLTAKLDDVLRTVGREEFTGRQQRISQVQVWHANVL TTKKKVDDLLSTYEAELQRLCLCGFCSKDLKLSYLYGRSVRLMLREVEKLSSQGGFDVVVEASTFGEVDEIPIQPTIFGQ ERMLEKAWTLLMEDGSGMLGLYGMGGVGKTTLLTQINNKFSEISDRFEVVIWVVVSKSATVRKIQRDIAQKVGLVEMGSG EKDENQRALDIYNVLRRRKFALLLDDIWEKVDLKAVGVPYPTRNNGCKVAFTTRSRDVCGRMGVDDPVEVSCLQPDESWD LFQRTVGENTLGSHPDIPELARKVARKCRGLPLALNVIGETMACKRTVHEWCHAVDVLTSSATEFSGMEDEILPVLKYSY DNLSGEMVRSCFLYCSLFPEDYHIDKERLVEYWIGEGFVSEKESRERTLNQGYEIVGTLVRACLLMEERKDKSYVKMHDV VREMALWISSDFGNQKERCVVRAGVGLREIPKLKDWTTVRKMSLMNNGIEEIFDSHECGELTTLFLQKNAFVKISGEFFR CMPHLAVLDLSENHSLEELPEEISELGSLRYLDVSYTCVNQLPVGLWELKKLIHLNLEHMSRLGSILGISSLWNLRTLGL RGLVLDMRLVNELELLEHLQVVTIDISSASVVKPLLWSHRLVVCIREVDFKYLEEESMRVLTLPTIVNLRRLSIKRCGMR EIEIEKTTSSSSSSWNKIHTAPYFSNLSKVFITKCHGLKDLTWLLFAPNLAFLQVSFSRQLEDIINQEKAASVENAATIV PFRRLETLHLSALRGLERIYWNALPFPCLKVIHVEKCWKLRKLPLDSNSGAGGKELVLSYGDREWIEKLEWEDQATRVRF LTSCRWHWRATQ* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0006952 |
| Pfam | Leucine rich repeat |
| KEGG | disease resistance protein RPS5-like; K13459 disease resistance protein RPS2 (A) |