Names & Information
Knowledge of BnaC08G0201000ZY:
| Gene Name | BnaC08G0201000ZY |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC08g17450D [Brassica napus] |
| Best Hit (SwissProt) | Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 |
| NT seq | Len:2205 nt ATGTCGTCGTGGTGCGGTCCTTCACGTCGTCAAGTCAAATACGATGTCTTCCTCAGTTTCCGAGGTGGAGACACACGTAA AAACATCATTAGCCATTTGCACAAAGAACTTGTGAGACAAGGAATACGTACATTCAAAGACGACGAAACGCTCGAAACAG GAGACCGTTTCCCTGAAAGACTCCGTGAAGCCATCAACACGTCGAGGTTCGCCATTGTGGTTATCTCGAAGAACTACGCT ACTTCGAGATGGTGCTTGGAAGAGCTTCGAATGATAATGAAGCTTCAACGGGAGAAAAAGATTGCTGTGATTCCTGTTTT CTATGAAGTGGATATCTCTGACGTTAGAAATCATCGAAGTGGTTTTGGTTTAGTACAACATCACAAAGATCCCAAGATTC CATTCTGGAAAGATGCGCTTAGGGGAATCGCAAACACACAAGCCACCGAGTCAAGAAAATGCAAGGACGATGCCACGTTG GTTGAGGGAGTTGTTGAACTTCTTTCAGACAAGTTGTTGTCTATGTTGCCAATGGACCTCGGGGATATGGTTGGTATGGA AGCTGACATGGACCAAATCGAACATCTCTTGGACATGTCCTTTAGGACCAATGAGGTTCGCATGGTAGGAATCTGGGGAA TGGCAGGCATTGGCAAAACTGCCATAGCCAAGAATCTTTATCAAAAACATAAACACCATTTCAAGATTCATCATTGTTTC ATGGAAAAGGTTTCTTCTCTGAAAGCAAAGAGTCCCTTAGATCTACAGAAATGGCTTCTTTCAGATATTCTTCGGAAAAA AGATCTCAAGGCACTGAACCTTGGCCAGGGAGCTCCTTGTATCAAGTCAAGGCTCGTAAACCTAAAATCCCTCATTGTTA TTGATGATGTGGACGATGTGAAACAGCTGGATGCCTTGGCAAAAGAGGCTAGTTGGTTTGGACCAGGGACACGAATCATC ATAACAACACGAGACAAGAGCTTGCTCAACTCCTCCTCCTGTGCCGTGTACAAAGTTGAGTATCTGAAGGATGATAAGGC ACTCCAGATCTTTCAGCGGTTTGCTTTTCAAGGAGCAGAACCTCCTATTGCCTACAATGATCTTTCTATAAGTATCTCTC AGCTTGCTCAAGGTCTTCCTTCTGCCCTTGAGGATTTCGGCACTTATCTCCGCGGCAAGTCCCTAGTGGAGTGGCGAGAT GCTTTGAAATCGTTTCGGGAAGCTCCTCTCGAGAAAACCATGGTGGACTTGAAAAGTAGCTACGATGGTTTAGATGAACT CGGTAAGGCGGCTTTTCTTCATGTGGCATGCCTTTTCAATGGAGAACCTGTCCGGCGAGTCAGGAAACTTATTGGTCAAG GTAAAGCCGGAATGAGAGTTTTAAAGGAAAAGTCTCTCATCAAGGTGTCTTCTGATAGGCGTATAACTATGCACCGTTTG CTGGAGCAAATGGGGAAACATATTGTGCGTCAAGAGTCAAACAACAACCCTTCTCAGCAACGTATCTTGTGGCACCATGA CGACATCCTTCGAGTACTTGATACCAATACAAGTAAGCACTTAATTGAAGGAGTGGTGCTAGATGTTTGTGAATTGCGCG CTGGAGTTCACATCAACTGGGATGATTTCAAGCCGATGTATAATCTGAGACTCCAGAAAGTTGATTTGTCCAACTGTGAT AGGCTGGAAAAGCTGAACATCAGTATATCGGATTCTAAAGATAATGGCTTTGAAGACACAAGCACGTGCCTTAGATCAGT CTTCATGTTTTTCTTTGGCACAGAGCCGTTTGTGGGAAATAAACTGGGGTGCTCTCTTACAGACCCATCAATCAGAGGCA ACTTACAAATCTACTTGAAGCTTCTTGAAGGATCTGCAGATCATCTATCTTTTGTTTCTGAGAACCACGTCTGTCATGAC GTGGACCTCAAGTCACCTCCCTACGGTTTTAAATCACTGGACATCATGCGGTGTTTCCAGCTGGAAGACGCAGTAAAGAG GTACCAGTATGTGCTTGTCCTTGCTTCCAGGAAACAAGAACACGTCGTGTTTAAAGTCATGGTTGTGGGATTTCTTCCTG TGTATATTGGCTGTGGCTGTCGGCATTTTTCTTGCGGTGATAACCGATCATGTCATCGCAACTACATTATTAATGACTAT TTTAATGTATCTGAGGTTATCAGATTTAAAATGGAAAAGGACTAA |
| AA seq | Len:735 aa MSSWCGPSRRQVKYDVFLSFRGGDTRKNIISHLHKELVRQGIRTFKDDETLETGDRFPERLREAINTSRFAIVVISKNYA TSRWCLEELRMIMKLQREKKIAVIPVFYEVDISDVRNHRSGFGLVQHHKDPKIPFWKDALRGIANTQATESRKCKDDATL VEGVVELLSDKLLSMLPMDLGDMVGMEADMDQIEHLLDMSFRTNEVRMVGIWGMAGIGKTAIAKNLYQKHKHHFKIHHCF MEKVSSLKAKSPLDLQKWLLSDILRKKDLKALNLGQGAPCIKSRLVNLKSLIVIDDVDDVKQLDALAKEASWFGPGTRII ITTRDKSLLNSSSCAVYKVEYLKDDKALQIFQRFAFQGAEPPIAYNDLSISISQLAQGLPSALEDFGTYLRGKSLVEWRD ALKSFREAPLEKTMVDLKSSYDGLDELGKAAFLHVACLFNGEPVRRVRKLIGQGKAGMRVLKEKSLIKVSSDRRITMHRL LEQMGKHIVRQESNNNPSQQRILWHHDDILRVLDTNTSKHLIEGVVLDVCELRAGVHINWDDFKPMYNLRLQKVDLSNCD RLEKLNISISDSKDNGFEDTSTCLRSVFMFFFGTEPFVGNKLGCSLTDPSIRGNLQIYLKLLEGSADHLSFVSENHVCHD VDLKSPPYGFKSLDIMRCFQLEDAVKRYQYVLVLASRKQEHVVFKVMVVGFLPVYIGCGCRHFSCGDNRSCHRNYIINDY FNVSEVIRFKMEKD* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | TIR domain |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |