Names & Information
Knowledge of BnaC08G0225400GG:
| Gene Name | BnaC08G0225400GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC08g20220D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:3573 nt ATGATGAAGACCCATTGGAGGCTCAAGTGGGACATATTCCTCAGTTTCCAAAGAGAAACAAGCCACAGTTTCACGGATCG TCTCAATGAAGTGCTCATCAAGGAACATGTCCGGGTATGGAAATGTCAAGTGAAACGCAAGAATCAGGTGCTCGGTCCAA GTCTCGTGGAGGCAATTGAAGATTCGGTGGCGTTCATCGTTGTCCTATCCCCTGATTACGCTAAGTCTCACTGGTGTCTT AAAGAATTAGCCAAGCTCTGCGATCTGAGATCACTGGGTCGTCCAATATTACCAATCTTTTATGAGGTTGATCCATGGAG TTTTCGGAGACAGTGTCCTTTCGATATGGATTTTGAGGAGCACTCGAAAAAATTTGGGGAGGAGGAGATACAACGATGGA GGGAAGCCATGAAAATAGTGGGGAATATCTCCGGATATGTAGAAAACTCGGTTGAAGAGGACCTGATAGAGCTTGTGGTG AAAAGCGTTTTAGCACAAGTGAGCAATACGCCCGAGAAAGTTGGAGAATACTCGACAACTCTTGCAAAAGCCTTCTATAA CAAGATCATTGCAGAGTTCGAGCATAGAGTTTTCATCTCAAACGTTAGAGAAAACTCATCAGACCAAGATGGTTTAGTCA ATCTACAAAAGAGTTTCATCAAGGCACTTCTCCATTCGGTACCTGAAATAGAAGATGCTAACGGAGGCATAGACAAGATA AGAACAAGTGTTCATGCGAAGAAGATTCTTGTGGTTTTAGATGATGTTGATAATGTAGACCAGCTTAATGCCCTGGTTGG TGAAAAAAGTTGGTACGGTGAAGGAACTGTTATAGTCATCACAACCAGAGATGAAGAGATTCTGAGTAGGCCCTCTGTGA ACCAAAAGTATGAGGAAAAGAAAGAACCAACAGAGAGTCTTATCGAGTTGTCAAAGAAGATTGTCAAGATAACAGGACTC TTGCCATTGGCTATTGAAGTGTTTGTCTTCCTCGACATTGCGTGTCTCTTCCTTAAAATGGAGATAAAGAAAGAGGAAGT CATCGATGTACTGAAAGGTTGTGGGTTTAAAGCTGAGGCTGCTCTCAATGTGCTAAGACAGAAGGATCATCTATCATCCA TCCAAGGAATAGTATTGGACTTCAAAAAGAAGTTAGCTAGGGACCCAAGTGCAGAGGAAATTGCATTCAGGAATCTACAT GACAAGCCAGGCATAAGATCAGTGTTTAGTTACCTGAAGAATAAGTTTGTAAAGTTTCCAGCAGAGGAAAAGCCAAAAAG TTCTGAAATCACCACTCATGTTGAGCCTTTTGTACCAATGAAGAAGTTGAGACTTCTTCAGATTAATCATGTGGAGCTTG AAGGAGATCTTAAGCTCCTTCCATCTGAACTCAAATGGATACAATGGAGAGGTTGCCCATTAAAGGATGTTCCACCAGTT TTTCTTGCTAGGCAACTTGCCGTTCTTGATCTTGCAGACAGTGGAATAAGACGAGTTCAGAGTTTGCACAGAAAAGAGAT GGATGGGAACTTGAAGGTTGTAAATTTGCGTGGTTGCCACAGCTTAGAAGCTATTCCTGATTTATCAAACCATAAATCCC TGGAGAAGCTTATTCTGGAACGATGCATGCTTCTGGTGAAGGTTCCTAGATCAGTTGGTAATCTGAGTAAATTGCTTCAA CTGGACTTCAGTTACTGTTCGAATCTTACCGAGTTTCTTGTGGATGTTTCTGGACTAAAGAGTCTTGAAAAGCTTTTCCT CTCTGGCTGTTCAAATCTGAGTGTCTTACCAGAAAACATTGGTGACATGCCATGTTTGAAAGAGCTTCTTCTTGGTGACA CTGCCATAAAGAACTTACCAGTAGGGGTGGGCACTTTACCCGATACCCGAAGCAGCACCCGAACCCGATCCGAAAAATTC GAACAGAAATCCAAACCGAAATCTATTCAAGAGCTACCTTTGTGCATAGGAATGTTGGCATCGCTTGAAGAGCTAAATCT TACTGCCACAGCATTGAAAAATCTCCCAAGTTCTATTGGAAAACTAAAAAATCTCCAGAAGCTTTATTTGATGCACTGTG CATCCTTTTCTAAGTTACCTGACACTATCAATGAGCTTAAATCATTGAAGAAACTATTCATCAACGGAAGCGCGGTGGAG GAGCTACCTTTAAACCCTGGCTCACTGCCATCTTTGACTGACTTTTCAGCAGGAGGATGCAAACATCTGAAGCAGGTTCC GAGTTCGATTGGAGGACTAAACTCTCTTCTTGATCTTGAGTTGGATTGGACCCCAATTGAAACTCTACCAAAAGAGATTG GTGGCTTGCACTTTATTCGAAAACTTGTGTTGAGGAACTGCAAGTCTCTGAAGGTTCTGCCTGAGTCATTAGGAGACATG GACACACTCCATAGCTTATGCCTTGAAGGCTCCAACATTGAGAAACTGCCTGAAAGTTTTGGCAAGCTGGAGAACTTAGT CTTACTCCGAATGAACAACTGCAAAAAGATCAAGAGGCTTCCTGAGTCCTTTGGAGACTTGAAATCTCTTCACCATCTGT TCATGCAAGAAACTTTGGTTGTGGAGTTGCCAGAAAGTTTTGGAAACCTCTCTAAACTAGTGACATTGAAAATGCTGAAG AAACCTCTTTTTAGAAGCTGTGAGAGTGGTAAGATCCCAGATGTTCTTGGAAAGCTTTCATCTCTGAAGATACTTAAACT GGGGAATAACTATTTTCACAGTCTTCCATCTAGCCTCGAGGGGTTATTGAATCTCAGAGAACTTTCATTGTATGACTGCC GAGAGCTAAAGTGTCTTCCTCCTCTTCCATGTAACTTGGAGCAGCTTAACCTAGCAAATTGCTTTTCATTGGAGAGTATA TCAGACCTTTCCAAGCTGAAGATCTTGCATGAACTCAATCTCACAAACTGTAAGAAAGTGGATGACATTCCAGGACTAGA GCACTTGAAGGCTCTGAAACGGTTATACATGAGCGGCTGTAAGTCCAAGTGCTCTTCTGAAGTAAAGAAAAGACTCTCCA AGGCTTCTTTGAAAATGATGGTGAATCTGAGCTTACCTGGAAACAGAATCCCAGTCTGGTTCTCACAAGGCCCTCTCAGA TACACAACTCAGCCGAACAGAGAGCTCAGAGGCGTAATCCTGGCCGTAGTTGTGGCTCTTAACCATGAACGCAAAGATGA CTACCAGCTTCCTGATGTGGTGGAGGTTCAAGCCCAAATTCTCAAACTTGATCTAGCCTTATACACCCACACATTGCACC TCTCTGGAGTGCCTAGAACAAGTGATGACCAACTCCACATCTGCAGATACTCAGCTATGCATCCAATGGTAGCTATGTTT AAAGACGGGTACACAATACAAGTCACCAAACGTGAACCACCAGTCAAACAAGGCGTTGAGCTAAAGATGCATGGGATTCA TCTGGTTTACGAAGGGGATGATGATTTTAAAGGCGAAGAGAGTGACTTCACCGAGACACAGAAACTTACCAATTTTTTCA GCACTTTTGAAGAAGGTGAGGCCAGCTCAAAAGGTGGTTCTGAGTTTACATGA |
| AA seq | Len:1191 aa MMKTHWRLKWDIFLSFQRETSHSFTDRLNEVLIKEHVRVWKCQVKRKNQVLGPSLVEAIEDSVAFIVVLSPDYAKSHWCL KELAKLCDLRSLGRPILPIFYEVDPWSFRRQCPFDMDFEEHSKKFGEEEIQRWREAMKIVGNISGYVENSVEEDLIELVV KSVLAQVSNTPEKVGEYSTTLAKAFYNKIIAEFEHRVFISNVRENSSDQDGLVNLQKSFIKALLHSVPEIEDANGGIDKI RTSVHAKKILVVLDDVDNVDQLNALVGEKSWYGEGTVIVITTRDEEILSRPSVNQKYEEKKEPTESLIELSKKIVKITGL LPLAIEVFVFLDIACLFLKMEIKKEEVIDVLKGCGFKAEAALNVLRQKDHLSSIQGIVLDFKKKLARDPSAEEIAFRNLH DKPGIRSVFSYLKNKFVKFPAEEKPKSSEITTHVEPFVPMKKLRLLQINHVELEGDLKLLPSELKWIQWRGCPLKDVPPV FLARQLAVLDLADSGIRRVQSLHRKEMDGNLKVVNLRGCHSLEAIPDLSNHKSLEKLILERCMLLVKVPRSVGNLSKLLQ LDFSYCSNLTEFLVDVSGLKSLEKLFLSGCSNLSVLPENIGDMPCLKELLLGDTAIKNLPVGVGTLPDTRSSTRTRSEKF EQKSKPKSIQELPLCIGMLASLEELNLTATALKNLPSSIGKLKNLQKLYLMHCASFSKLPDTINELKSLKKLFINGSAVE ELPLNPGSLPSLTDFSAGGCKHLKQVPSSIGGLNSLLDLELDWTPIETLPKEIGGLHFIRKLVLRNCKSLKVLPESLGDM DTLHSLCLEGSNIEKLPESFGKLENLVLLRMNNCKKIKRLPESFGDLKSLHHLFMQETLVVELPESFGNLSKLVTLKMLK KPLFRSCESGKIPDVLGKLSSLKILKLGNNYFHSLPSSLEGLLNLRELSLYDCRELKCLPPLPCNLEQLNLANCFSLESI SDLSKLKILHELNLTNCKKVDDIPGLEHLKALKRLYMSGCKSKCSSEVKKRLSKASLKMMVNLSLPGNRIPVWFSQGPLR YTTQPNRELRGVILAVVVALNHERKDDYQLPDVVEVQAQILKLDLALYTHTLHLSGVPRTSDDQLHICRYSAMHPMVAMF KDGYTIQVTKREPPVKQGVELKMHGIHLVYEGDDDFKGEESDFTETQKLTNFFSTFEEGEASSKGGSEFT* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | NB-ARC domain |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |