Names & Information
Knowledge of BnaC08G0235400GG:
| Gene Name | BnaC08G0235400GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC08g20450D [Brassica napus] |
| Best Hit (SwissProt) | Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 |
| NT seq | Len:2748 nt ATGGCAAATTCTTTATCTGTGTGGAAGTACGATGCCTTCCTGAGTTTCAGAGGGACAGATGTTCGCAAAAAATTCATCAG CCATCTCAACGATGCTCTCACCGAGGAAGGAATCATAACCTTCCACGACGACAGAGACCTTGAGAGAGGCAATCCAATCT TGAAAGGACTCGAGGAAGCGATGAATCAGTCGAGATTCGCAATCGTCGTGGTTTCCGAGGACTACGCTACATCTCAATGG TGCTTGAGAGAGCTTGCGTTTATGGTCGAGTTAGCTGAGAAGAAACGCTTCGACTTGATCCCTATATTCTATGAAATCGA TCCTTCAGCCTTGAAGAGCCGAACCGGTTGTTTTACCAAAGCTTTTGAGGATCATGAGCAGAGGTTTGATGCTGAGACGG TGACAAAGTGGAGAAAGGCTGTGGCTATAGTTGCAAACATATCTGGCTGGGATTCCAAAACCAGGATCGATGACTCAAAG CTTATACAGGAAGTTGTTGGAGATCTTTGTGAGAGGTTATACTCAGTCTCAGAGCCATCAGACGAAACAAGTGAATTTGT AGGGATGAGTCTCCATAAGAAACGCATAGAATCTCTTTTATCAAAGGACGACGACTCTGATGATGTCGATGTCAAAATGG TAGGAGTCTGGGGTATGGGGGGCAGAGGGAAAACAACCATCGCTAAATGTGTCTACGAATCCCTCTCGACTCATTTTCCC AGTCGTTGCTTTCTCGGAAACGTGAAAGATGATTTCCATAAACATGGTGAATCATCATCATCATCATCATCCCATCTGCG GAAGCAAATCATGTCTGAAATTTTCCCCAAAAGCCCCCTGAATGCACGGTGCGTCAGCCCCGAGGCAATGAAGCGGAGGC TACGCGGCAAGAAGGTTCTTCTCATCCTCGATGATGTTGACGACATTCAGCAACTCAAAGAATTGGCTGGAGACTGCAAG TGGTTTGGACCAGGAAGCAGGATCATTATAACCACGCGAGACAAGCGTGTGTTAGATGAGCACTCTGTGAAACACATTTA CGAAGTGAAGCCTCTTAGGACCACACAAGCGCTTCAGCTTTTCAGCAAGCATGCCTTCAAAACGAGTCGTCCACAAGCAG AGTTCAGACGACTCTGTTTAGATATTGTGGAGCAGCTTTGCGGTCTTCCTTTAGCGCTTCGGGTCATTGGTGCGTCTCTG CATGGTCGGAATACATCATTTTGGGAAGATAAGCTGTGTATACTGAGAAACAGTCTTGATAAATCTATATCAACGCCGTT AAAAGTAAGTTATGATGCACTGGATGAGCATGAAAAGACTGTGTTTCTTTATGTTGCTGGTTGCTTCAACGGGGAATATA TGGATCGAGCGATTATGGTACTAGATCCCTTTGTGATCAGATCCAAACCGAGGTTGGTGACTCTGATGGAGAAGTCTCTG ATTAGTATGTCCAACAATACGAGGCTATGGGTTCATGATTTACTTCAAGACATGGCTAAGGATATCACTTGTGAAGGAAA AATGAAGAAGCGTAAGATGATGTGGAACTTTTTGGATATCAAAGGGTTGTTCACTGAAACTATGGCTGGGGGGAATAAAG ACATTGAGGTTGAAAGTATATTGCTCAACATGGCTGAAGAAACAGGGTTTTGCGTTCACCCCGAAACGTTTAAGAGGATG CGCGAACTCAAGTTTCTTAAAATTCATAGTAATTTAACTGCTGCGGGGAGCAAAGTGTGTATCGTCAAGGACGACGGTTT TGACTACCTCCCTCCACTAAGATATCTTCACTGGGAGGCTTACACTTTAAAGTCACTGCCTGCAAAGTTTGAGACTAACG TTCTAGTTGAGCTAAACCTCCCTGATAGCTCAGTTGAAACACTATGGAGCGGAAGTCAGGACCTTGGAAGTCTAAGACAC ATGAACCTTAACAGATGCAGGAATCTGACTGAACTTCCAGACCTTTCAAAGGCAAGGAATCTCGAGTGCTTGTGCCTTTG TGATTGCGAAAGCTTGGTTGAGCTTCCCTCTTCTCTTGGTCATCTTGATAAGTTAGTTAAGCTGTCCATGCTAAACTGCA AGAAACTCAAGAGTCTCCCATGTAACATCAAGTTGAAGTCTCTCAAAACTCTTTCTCTAGACGGATGCATCAATATAGAA GAATTCCCATTTGTTTCCGACGTTATTGAAGAGTTGGGACTGCGCTGCACATCAGTTGAACTAGTGCCAAATTCGATCAG CCGTCTCTCGAAGCTCACGGAGCTTCGGTTGTCACATTGCAAGAGACTGAAGAATCTCCCTGACACCTTCGGGAATTTGA CTTCACTCAAGCATCTCACGCTGACTTGCTGTCCCAACATCACAGTGTTTCCAATGCTTGGCAATGGAGTAGAAACTGTG TCCTTGAACGGAACACTGATCGAGGAAGTTCCCTCATGGATAGGGGATAAGGTGAATCTGACGTGTCTTGACATGTCAGA GTGCAAGAAGCTCCATAACCTGCCTCACTCGCTGAGAAACCTGAAAAACCTGAAGCTGCTTTATCTCCGTGGATGCATTA GTATTACTGAGATCCCACAGGTCGCAGGGGAAATGAGAAGATTGGATTTACATGGGACGTCGATAGAGAAATATGGAGTT CTCTCTGAAGAGGAAGCACTTGTGTTGCACAATCGTGATATGGAGTTCTTGAAAGGTTTTCTCACTCGCTATGTCCGGAT GTACAAGAGAAACCGCAACTCTAGATAG |
| AA seq | Len:916 aa MANSLSVWKYDAFLSFRGTDVRKKFISHLNDALTEEGIITFHDDRDLERGNPILKGLEEAMNQSRFAIVVVSEDYATSQW CLRELAFMVELAEKKRFDLIPIFYEIDPSALKSRTGCFTKAFEDHEQRFDAETVTKWRKAVAIVANISGWDSKTRIDDSK LIQEVVGDLCERLYSVSEPSDETSEFVGMSLHKKRIESLLSKDDDSDDVDVKMVGVWGMGGRGKTTIAKCVYESLSTHFP SRCFLGNVKDDFHKHGESSSSSSSHLRKQIMSEIFPKSPLNARCVSPEAMKRRLRGKKVLLILDDVDDIQQLKELAGDCK WFGPGSRIIITTRDKRVLDEHSVKHIYEVKPLRTTQALQLFSKHAFKTSRPQAEFRRLCLDIVEQLCGLPLALRVIGASL HGRNTSFWEDKLCILRNSLDKSISTPLKVSYDALDEHEKTVFLYVAGCFNGEYMDRAIMVLDPFVIRSKPRLVTLMEKSL ISMSNNTRLWVHDLLQDMAKDITCEGKMKKRKMMWNFLDIKGLFTETMAGGNKDIEVESILLNMAEETGFCVHPETFKRM RELKFLKIHSNLTAAGSKVCIVKDDGFDYLPPLRYLHWEAYTLKSLPAKFETNVLVELNLPDSSVETLWSGSQDLGSLRH MNLNRCRNLTELPDLSKARNLECLCLCDCESLVELPSSLGHLDKLVKLSMLNCKKLKSLPCNIKLKSLKTLSLDGCINIE EFPFVSDVIEELGLRCTSVELVPNSISRLSKLTELRLSHCKRLKNLPDTFGNLTSLKHLTLTCCPNITVFPMLGNGVETV SLNGTLIEEVPSWIGDKVNLTCLDMSECKKLHNLPHSLRNLKNLKLLYLRGCISITEIPQVAGEMRRLDLHGTSIEKYGV LSEEEALVLHNRDMEFLKGFLTRYVRMYKRNRNSR* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |