Names & Information
Knowledge of BnaC08G0280300ZS:
| Gene Name | BnaC08G0280300ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaAnng18140D [Brassica napus] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:4164 nt ATGGAGGCTACCGCTCTTTCGAAGCCGCCGCATAGGTACAAGCACGACGTCTTCCTCAGTTTCCGATCCGAAGAAGATGA CTTCTCAAAGCGTCTCTACAACGCGCTAAGTAAGGAGGTCCGCGTCTTCCGCGACAACAACGAAGGTATGGAGCGAGGAG GGACTGACGAGAACAACAAACGCCTCTTCAAAGCCATGGAGGACTCAGCTGCCTCCGTCGTCGTCTTCACCCAACACTAC GCAGACTCTCGATTGTGCCTAGATGAGCTTGCTATGCTCTGCTATCTCGGAACATCTCTGGATCGTCCCATTTTGCCGAT CTTTTACAAGGTCAATCCCTCTCATGTACGCAAACAGAACGATCATTTCAAGAAGGATTTTGATGAACACGAGAAAATAT TTAGCGAGGAAGAGGTAAAACGATGGAGAGACGCTATGAAATTAGTTGGAAACCTCGCTGGATATGTTTACAGCCACAGA AAAGGGACGGATGAGGTTGAGGCTGAGGATGAAATAATAAGTCTTGTGGTGAAGAAGGTTTTAGCTCAAGTGAGCAATAC ACCTGAGAAAGTTGGAGAATACACGGTGGGGCTAGAATCACGTGTCCAAGATTTGAAGGATCTTGTGGACGTTAAATCCA CTGGTGACGATGTTCAAATCCTGGGACTTTACGGTATGGGTGGTATTGGGAAGACTACACTTGCGAAACGATTCTATAAC CTGATCCTGGGGAACTTTGAGGACCACCGAGTTTTCATCTCTAACGTTAGACAAGAATCATCAGACGGCTTGCTCAATCT ACAGAAGACTTTCATCCAGTCACTTTTCGGTTCGGTACCTGAAATAGAAGATGTTAACAGTGGCCGTGACAGGATTAGAG GGAGAGTTCGTGAGAAGAAGATTCTTGCGGTTTTAGATGATGTTGATAACGTAGACCAGGTTGATGCGCTGGTCGGTGAA AGAAGTTGGTATGGTGAAGGAAGTCTTATCATCATCACCACCAGAGATGAAGAGATTCTCAGTAAGCTCTCTGTGAACCA AAAGTATGAGGTTAACTGCTTGACTGAGGTGCAGGCCTTGAAGCTGTTTAGTTTCCATTCACTACGGAAAGAAGAACCAA CAGAGAAGCTGTTGGAGTTGTCAAAGAAGATTGTCAAGATAACGGGGAAGTTGCCACTTGCTGTTGAAGTGTTTGGTTCG CATATGTACGACAAGAAGGAAGATGAGTGGCTAACTGAACTAGAGAAGCTGGAAAATACCCAACCAGGCGATCTCCAAAG TGTTCTGGCGCTGAGTTTCAAATCCTTGGGAGATGAAGCGAAGACAGTCTTCCTCGACATTGCGTGTCTCTTCCTTAAAA TGGAGATAACGAAAGAAGAAGTCATGGACGTACTGAAAGGTTGTGGGCTTAACGCTGAGGCTGCTCTCACTGTCCTCAGA CAGAAGTCTCTTGTTAAGATATTGTCAGACAAAGACAATACTCTTTGGATGCATGATCAGATCAGAGACATGGGAATGCA GATGGTCCTTAATGAAAGCCGTGAGGATCCTGAAATGAGAAGTAGACTCTGGGATCGTGGTGAAATCATGAATGTATTAA ACTATGTGAAGGGAACAACATCCATCCGAGGAATTGTATTAGACTTCAAAAAGAAGTTTGTGAGGCATGCAACTGCAGTT GAAATAGCGTCGAGCAATCTACAAAACAATCCAGGCATCAGCTCTGCGGTTAGCTACGTGAAGAATATGTTTGCAAAGTT TCCAGAAGAGGAGAAGACTAAAACTTCTGAAGTCACCATTCCCACAGAGCCTTTTGTACCAATGGAGAAGCTGAGACTTC TTCAGATCAATCATGTGGAGCTTGAAGGAGATCTTAAGCTCCTCCCATCTGAACTCAAGTGGATACAATGGAGAGATTGC CCATTAAAAGACGTTCCACCGGTTTTTCTTTCTGGACAACTTGCTGTTCTTGATCTTTCAGAGAGTGGAATAAGAAGAGT CCAGACTTTATGGTTCAAGAAGGATAATGAGAACTTGAAGGTTGTAAATATGCGCGGTTGCCACAGCTTAGAAGCCATTC CTGATTTGTCAAACCATAAGGCCTTAGAGAAGCTTGTTTTCGAGAGATGCAAGCTTCTGGTGAAGGTTCCTAGATCAATT GGTAATCTAAGCAAATTGCTTCAACTGGACTTCAGTTACTGTACAAATCTTACTGAGTTTCTTGCGGATGTTTCTAAACT GAAGCATCTTGAAAAACTCTTCCTCTCTGGCTGTTCAAATATGAGTGTGTTACCAAAAAACATCGGTGACATGACATGCT TGAAAGAGCTTCTTCTTGATGGAACTGCTATAAAGAACCTACCGGCATCTATTGGTGGTCTTGAAAGACTTAAAAAGCTT AATCTGTTCGGCTGCAGATCTATTCAAGAGCTACCTGTAGGCCTGGATTCATTGACATCACTGGAGGAGCTAGATCTAAG TTATACTGCACTGAAAACCCTTCCAAGCTCTATTGGAGGTCTGATAAATCTCAAGAAGCTACTTTTGATGCACTGCACGT CCCTTACTGAGATTCCTGACACTATCAATGAGCTCAAATCACTGGAGGAGTTTTTCATCAATGGAAGTGGGGTGGAGGAG CTACCTCTAAACCTTGGATCACTACAATCTTTGACTGAATTTTCAGCTGGAGGATGCAAATCGCTGAAGCAGGTTCCGAG TTCCATTGGTATGTTAAATAATCTCTTCCAACTTGAGTTGGATCAGACTCCAATTGTAACTCTACCAGAAGAGACTGGTG ACCTGCGCTTTATTCAGAAACTTGAACTGAGGAACTGCAAATCCCTCAAGTTTCTGCCTAAATCAATAGGAGGTATGGAC ACACTCAAAAGCTTATACCTTACAGGCTCTGACATTGAAGAACTTCCTGAAGAATTCGGAAAACTCGAAAAACTAGTACT ACTCCAAATGAACAAGTGTAAGAAGCTCAAGAGGCTTCCTAACTCATTTGGAGACTTGAAGTCTCTTTATCATCTCTACA TGGAGGAAACTTCGGTGGTGGAGTTGCCAGAAAGTTTCGGAAACCTCTCTAAACTAATGACATTGAAAATGATGAAAAGA CCTCTCTTTAGAAGTGATACTCAAGGTAGTACAAGTGCTGAACCTGGTTTTGTAATACCAGACTCTTTCTTAAATCTCGA GTCCCTTGAGGAAGTGGATGCTCGTAGCTGGGGAATCACTGGTAAAATCCCTGATGTTTTTGAGAAGCTTACATCTCTGA AGATACTCAACCTTGGGAATAATTATTTTCACAGTCTTCCTTCTAGCCTCAAGGAGTTAACAAATCTCAAAGAGCTTATA TTGTATGACTGCCAAGAGCTCACCTGTCTTCCTCCTCTTCCATGTAACTTGGAGAAGCTTAACCTGTCTGACTGCTTCTC ACTGGAGAGTGTATCTGACCTTTCGAAGCTGACGATGTTGCAAGAACTCAACCTCACAAACTGTAAGAACGTGAATGATA TTCCGGGACTAGAGCAGTTGAAGGCTCTAAAACGGTTATACATGAGCGGCTGTAACTCCAAGTGCTCCTCTGATGTAAAG AAAAGACTCTCCAAGGCTTCTTTGAAAATGCTGAGGAATTTGAGCGTACCTGGGGACAGAATCCCAGACTGGTTCTCGCA AGGACCTGTGAGGTATTCAGCTCAACCGAACCGAGAGCTCAGAGGCGTAATCGTTGCTGTTGTTGTGTCTGTTAACCAAG AGAGCAAAGATGACTTCCATGTCCCTGATGTGTTGGGGATCCAAGCCCAAATTCTCAAACTTGATAAAGTCTTGGTCAAC CACACGTTGAACCTAACTGGAGTGCCGATAACAAGTGATGATCAGCTTCACATCTGCCGGTACTCGCAGCACTACCCAAT GGTTTCGATGTTGAAAGAAGGGTACACCATACAGGTGGTCCAACAGAAGATGTTGATCAAACAAGACGCTGAGCTGAAGA TGCATGGGATCCATCTGGTTTACGAGGGGGATGATGATTTGGGAGCCGAAGAAAGTGACTGTGTGACGGAGACAATGCAA ACCGTTTCTCAGAAACTTGCCAACTTTTTCAGGTCTTTACAAGAAGGTGAAGCCAGCTCACAAGTTGGTTCTACTGTTAC ATGA |
| AA seq | Len:1388 aa MEATALSKPPHRYKHDVFLSFRSEEDDFSKRLYNALSKEVRVFRDNNEGMERGGTDENNKRLFKAMEDSAASVVVFTQHY ADSRLCLDELAMLCYLGTSLDRPILPIFYKVNPSHVRKQNDHFKKDFDEHEKIFSEEEVKRWRDAMKLVGNLAGYVYSHR KGTDEVEAEDEIISLVVKKVLAQVSNTPEKVGEYTVGLESRVQDLKDLVDVKSTGDDVQILGLYGMGGIGKTTLAKRFYN LILGNFEDHRVFISNVRQESSDGLLNLQKTFIQSLFGSVPEIEDVNSGRDRIRGRVREKKILAVLDDVDNVDQVDALVGE RSWYGEGSLIIITTRDEEILSKLSVNQKYEVNCLTEVQALKLFSFHSLRKEEPTEKLLELSKKIVKITGKLPLAVEVFGS HMYDKKEDEWLTELEKLENTQPGDLQSVLALSFKSLGDEAKTVFLDIACLFLKMEITKEEVMDVLKGCGLNAEAALTVLR QKSLVKILSDKDNTLWMHDQIRDMGMQMVLNESREDPEMRSRLWDRGEIMNVLNYVKGTTSIRGIVLDFKKKFVRHATAV EIASSNLQNNPGISSAVSYVKNMFAKFPEEEKTKTSEVTIPTEPFVPMEKLRLLQINHVELEGDLKLLPSELKWIQWRDC PLKDVPPVFLSGQLAVLDLSESGIRRVQTLWFKKDNENLKVVNMRGCHSLEAIPDLSNHKALEKLVFERCKLLVKVPRSI GNLSKLLQLDFSYCTNLTEFLADVSKLKHLEKLFLSGCSNMSVLPKNIGDMTCLKELLLDGTAIKNLPASIGGLERLKKL NLFGCRSIQELPVGLDSLTSLEELDLSYTALKTLPSSIGGLINLKKLLLMHCTSLTEIPDTINELKSLEEFFINGSGVEE LPLNLGSLQSLTEFSAGGCKSLKQVPSSIGMLNNLFQLELDQTPIVTLPEETGDLRFIQKLELRNCKSLKFLPKSIGGMD TLKSLYLTGSDIEELPEEFGKLEKLVLLQMNKCKKLKRLPNSFGDLKSLYHLYMEETSVVELPESFGNLSKLMTLKMMKR PLFRSDTQGSTSAEPGFVIPDSFLNLESLEEVDARSWGITGKIPDVFEKLTSLKILNLGNNYFHSLPSSLKELTNLKELI LYDCQELTCLPPLPCNLEKLNLSDCFSLESVSDLSKLTMLQELNLTNCKNVNDIPGLEQLKALKRLYMSGCNSKCSSDVK KRLSKASLKMLRNLSVPGDRIPDWFSQGPVRYSAQPNRELRGVIVAVVVSVNQESKDDFHVPDVLGIQAQILKLDKVLVN HTLNLTGVPITSDDQLHICRYSQHYPMVSMLKEGYTIQVVQQKMLIKQDAELKMHGIHLVYEGDDDLGAEESDCVTETMQ TVSQKLANFFRSLQEGEASSQVGSTVT* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | - |
| KEGG | leucine-rich repeat-containing protein, putative; K19613 leucine-rich repeat protein SHOC2 (A) |