Gene Name | BnaC09G0126600ZY |
Gene Location | |
Gene Structure | |
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Protein Name | |
Alternative splicing | |
Homology | |
Best Hit (NR) | BnaC09g11530D [Brassica napus] |
Best Hit (SwissProt) | Disease resistance protein RML1A OS=Arabidopsis thaliana GN=RLM1A PE=3 SV=1 |
NT seq | Len:2718 nt
ATGTTCGACGATCAAGCGATCGAGAGAAGCCAAATCATTGCTCCCGCTCTCACGCAAGCCATTAGAGAATCTAGGATCTC
GATCGTGGTGCTGTCGAAGAACTATGCCTCTTCTAGCTGGTGTTTGGATGAACTGTTGGAGATTTTGAAGTGCAAGGAAG
ATATGGGACAAATAGTGATGACCATCTTCTACGGTGTAGATCCATCCCATGTGCGGAGACAGACTGGAGAATTCGGGATT
GCTTTCAAGGAAACGTGTGCTCATAAAACAGAGGAGGAGAAGCAAAGATGGAGTCAAGCTTTGACTGATGTGGGAAACAT
AGCCGGAGAACACTTTCTAAAATGGGACAATGAATCAAACATGATAGAAAAGATTGCTAGAGATGTTTCAAACAAACTAA
ATGTTACAATCTCTAGGGGTTTTGAAGACATGGTAGGTATTGAAGCACACTTGGAGAAGATGCAGTCTTTGTTACATTTA
GATGATGATGATGATAAGGATGGAGCTATGTTTGTTGCAATATGTGGCCCTGCTGGCATTGGTAAGACTACCATTGCCAG
GGCTTTACATAGCAGGCTTTCTAGCAATTTCAAGCTTACTTGTTTTATGGAGAATCTTAGAGGAAGCTGTAACAGTGGTC
TTGACGAGTATGGATTGAAGCTGTGCCTACAAGAAAAACTTCTTTTAAAGATTTTTAACCAAAACAGTATGAGGATTTGC
CATATAGGAACAATACAAGAAAGGCTATGTGACCAAAAAGTTCTTATTATCCTTGATGATGCTGACGATCTGCAGCAACT
TGAGGCTTTGGCTGATGAAACGAACTGGTTTGGTTCTGGAAGTAGGATTATCATAACCACGGAAGATCAAGAGCTTTTGG
AGCAACATGGTATCAACAATACATACCATGTGGGCTTTCCAACTGAAATAGATGCTCGTCAGATCTTATGTAGGTCTGCA
TTCAAACAGAGCTCTGCGCCACATGGTTTTGAAAATCTTGTCGTTAGAGTAACAAAGCTATGCAGCAACCTTCCACTGGG
ACTCCGTGTTGTGGGTTCATCATTACGCGGAAAGAAAGAAGATGACTGGGAAAGTATATCGCATAGGCTAGATAATAACC
TTGATCGGAAGATCGATGGAGTACTTAGAGTGGGATACGATAGTTTACTTGAGAACGAGCAATCGCTATTTCTCCACATT
GCATTCTTTTTCAACTACCAAGACGATGATCATATCAAAGCCATGCTTGGTGACAGTAATTTGGATGTCACATACGGGTT
AAAAACACTGTCCTATAAATCTCTCATTCAAAAATCCACCAAAGGCAAAGTAGTGATGCACAAGTTGCTGCAACAAGTGG
CTAGACATGCAGTTCAAAGACAGAAGCCTTGGAAGCGCCAAATCTTAACCGATGCTAGTGAGATCTGTGATGTCCTCGAA
ACTAATTATGTTGTTCCGAATCTTTTCTACTTGGCATCTCTTCAAAGGGTGAGGATGTTGGGATGCAGGAAACTGAGAAA
AATTCCGCACATGTCCAGGAACATCACAAGACTTACAATCGCAGACACCATGTTAGAAGAAGAGTTTCCTGGATCAATTA
GCGCTTGGTCTCGCCTTCGGTGTCTCAATATAAATGGCAGTGTCAATCCATATCCACTTTCGTCAGAACCATTTCCTCCA
ATTATGACAGAACCATTTCCAGAGGAAAGTCTAGAAGACGTAGAGAATTTTCCAGACTGTATCAAAGATCTTCATGGATT
AATATGGCTGTGTGTAGGTGGCTGTCCAAAAATTACATCACTGCCAGAGCTCCCTCCCTCGCTCAGAACATTGAAGGTGG
AAGATTGTGAATCTTTGGAGACACTAATATCTTTTCCTTATGGCTCTCAAATTGAGGAACTCTATTTCCCCAACTGCTTT
AAATTGAGTGAAGAAGCGCGGAAAGTAATTGCACAGCAACCATTTCTCGAGATAGCATGTTTACCCGGATGGGAAATACC
TGCAGAGTTCGATCACCGAGCTCAAGGAAACTCCTTGACCATCACTTCATCTTTCTGCAGGTTAAGAGTTTGCCTTGTGG
TTACCCCTAAACCGCATACCAAAGTAGGTATTGTTGATTTATTGTGTAGCATGAGCTTAAACGGTTGCCCAATTGCCGAA
AGCATTGTTACGAGGCTCCCCTATATCCGAGCAGAACATCTATTTATATTTCCCTATGAATTGCTTGACAAAGAAGGATG
GCTTGAACAGAACAACGAGATATTGTTCCAATTCAGCACCTCATCCCGTAATATTGATGTTATTGAATGTGGTGTCCAGA
TCTTGACGAACAAAACCGGTAGAAAAAGAAGCACCTGTGAAACCTGTGAATCTGTGTCAGAACAAGTGTGTAAAGGCGAC
GATGATGAAAGTCTCTCTGATGGGAGATATGAGCAAGGACCGATCTACTGTTCACAGAATGGGGGCTCCTTGCGGAGTCA
GTTCTGGCATATGGTTTCTTCAACATCGACTGGCCGGCTTTTTGGCTCTGACGGTGGTCGTTCTTCTCTGGCTCCGGTGA
CTCGACCTTCCTTCGGTACTGTCACTGGCTCTGACTATGGCGAACCATCTTCTTCTTTGTTGGTGTCGTCGGGATCTTCT
CCGGGTCTTCCCCAGATCTTGCTTGCTCTTCGTTTCCACACTTCTCTTTGTTACAATCATTCCAGATCTCTTAATTGA |
AA seq | Len:906 aa
MFDDQAIERSQIIAPALTQAIRESRISIVVLSKNYASSSWCLDELLEILKCKEDMGQIVMTIFYGVDPSHVRRQTGEFGI
AFKETCAHKTEEEKQRWSQALTDVGNIAGEHFLKWDNESNMIEKIARDVSNKLNVTISRGFEDMVGIEAHLEKMQSLLHL
DDDDDKDGAMFVAICGPAGIGKTTIARALHSRLSSNFKLTCFMENLRGSCNSGLDEYGLKLCLQEKLLLKIFNQNSMRIC
HIGTIQERLCDQKVLIILDDADDLQQLEALADETNWFGSGSRIIITTEDQELLEQHGINNTYHVGFPTEIDARQILCRSA
FKQSSAPHGFENLVVRVTKLCSNLPLGLRVVGSSLRGKKEDDWESISHRLDNNLDRKIDGVLRVGYDSLLENEQSLFLHI
AFFFNYQDDDHIKAMLGDSNLDVTYGLKTLSYKSLIQKSTKGKVVMHKLLQQVARHAVQRQKPWKRQILTDASEICDVLE
TNYVVPNLFYLASLQRVRMLGCRKLRKIPHMSRNITRLTIADTMLEEEFPGSISAWSRLRCLNINGSVNPYPLSSEPFPP
IMTEPFPEESLEDVENFPDCIKDLHGLIWLCVGGCPKITSLPELPPSLRTLKVEDCESLETLISFPYGSQIEELYFPNCF
KLSEEARKVIAQQPFLEIACLPGWEIPAEFDHRAQGNSLTITSSFCRLRVCLVVTPKPHTKVGIVDLLCSMSLNGCPIAE
SIVTRLPYIRAEHLFIFPYELLDKEGWLEQNNEILFQFSTSSRNIDVIECGVQILTNKTGRKRSTCETCESVSEQVCKGD
DDESLSDGRYEQGPIYCSQNGGSLRSQFWHMVSSTSTGRLFGSDGGRSSLAPVTRPSFGTVTGSDYGEPSSSLLVSSGSS
PGLPQILLALRFHTSLCYNHSRSLN* |
Expression(FPKM) | |
Classification(Core/Distributed) | |
Function classfication (GO) | GO:0000166 |
Pfam | TIR domain |
KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |
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