Gene Name | BnaC09G0141600ZY |
Gene Location | |
Gene Structure | |
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Protein Name | |
Alternative splicing | |
Homology | |
Best Hit (NR) | BnaC09g12650D [Brassica napus] |
Best Hit (SwissProt) | Disease resistance protein RML1B OS=Arabidopsis thaliana GN=RLM1B PE=2 SV=1 |
NT seq | Len:2268 nt
ATGGCTTCTTCTTCCTCATTTACGTCTCGTAACTACAGCTACAATGTCTTTGCGAGCTTCTACGGTCCTGACGTCCGTAA
AACACTTCTCAGTCACATACGTGAACAGTTTACCCGCAGCGGGATCACTATGTTTGACGATCAGGAGATTGTGAGAAGCG
CAACCATCGCCCCTTCACTCACAGAAGCTGTAAGAGAATCGAGGATCTCGATTGTGATTCTCTCCAAGAACTATGCTTCG
TCAAGCTGGTGTTTAAATGAACTAGTAGAGATATTGGAGTGCAAGAAAGCTATGGGGCATATAGTCATGACAATCTTCTA
CGGAGTGGATCCTTCCGATGTACGGAAACAGACCGGGGAATTCGGGATAGCTTTCAGTGAAACTTGTGCAAGTAAAACAA
AGGAGGAGAAGCAAAGATGGAGACAAGCTTTGAACGAAGTGGGTAACATTGCTGGAGAAGACTTCTTAAGATGGTCAAAT
GAAGCAAAAATGATCAAGAAAATTTCCAGAGATGTTTCAGATAAACTGAATGCTACACGGTCTAGGGATTTTGATGGCAT
GGTTGGACTTGAACCTCATTTGAGAGAAATGGAGTCTTTGTTAGATTTCGATGATGATGGAGTTAAGGTGGTCGCAATCT
CTGGTCCTGCAGGCATTGGTAAGACTACCATTGCTAGAGCAGTACATAGCTTGCACTCTTATAGGTTCCAACTTACTTGT
TTTGTTGACAACCTTAGGGGAAGCCATCCCATCAGTTTTGATGAGTATGGTTTGAAGTTGCGTTTACAAGAAGAGTTTCT
TTCGAATATTTTGAAACAAGATGGTATTAGGATATGCCATTTAGGTGTGATAGAAGAAAGGCTACACGACCAGAGAGTTC
TCGTCGTTCTTGATGATGTGAACAATATAAAACAATTAGAGGCGTTGGCTGGAGATATTTCTTGGTTTGGTCCTGGAAGT
AGGGTTGTGGTTACCACAGAAAACAAAGATCTTCTGCATCAACATGGTATCAACAATACCTACCATGTGGGAAATAGCTA
TCCACATGATGGTTTTCAAGAGCATGCATTAAAAGTAACTGACCTTTGTGGTAACCTTCCGCTGGGTCTACGTGTGGTGG
GTTCATCTTTACGCGGGAAGAAAGAGAACGAATGGGAAGATGTAATGAAGAGGTTGGAATCTGTTCTTGATCGAGATATT
GAGGAAGTACTAAGAGTGGGCTATGAAAGTTTAGATGAGAATGAGCAAACGCTATTTCTCCACATTGCAGTATTCTTCAA
CTATGAAAACGGCAATCTAGTGAAAACCATGTTCGCTGAGAGTGACTTGGATGTCAAATACGGGTTAAAAGTCCTTGAAA
ACAGATCTCTAATAGAGTTATATAACAAGAAGGAAACAATAAATATGCACAGATTACTACAACAAGTGGGTATAAAAGCC
ATCCATAAACAAGAGCCTTGGAAACGTCGGATCCTGATAGATGCTGCGGAGATACGTGATGTTCTTGAACTCGCCAAAGG
AACTAGATTTGTCTCCGGTATATCATTTGATATATCTGATATCGATGAGGTATCTATAAGCCCAATAGCTTTTAAAAGAA
TGCCAAAACTTCGATTCCTCAGAGTATACAAAAGCAAAGAAGGTGGGAATGATGTAATTCATATACCTGAGGAGATGGAG
CTTCCGAGTCGTCTAAGATTACTAGAGTGGAAGGCATACCCAAACAAGTGTCTTCCTCCTACCTTTCATCCTGAATATCT
TGTGAAACTTGATATGCAAGGTAGCCAGCTAGAGTACCTCTGGCAAGGAACCCAGCCGCTTACAAATCTCAAGGAGATAG
ATTTGCAGAGGTCTTTTCAGTTGAATGAGCTCCCTGATCTCTCAAATGCTACAAATCTTAAAGGATTGTATCTAAGTTAT
TGCCAGAGCTTGGTAGAGCTTCCACCCTCTTGTTCAAGTCTCGATAAACTAAAGGATTTGTGGATGGATCACTGCACAAA
CCTACAAGTCATTCCAGCTCACATGAAATTGGCATCTCTTAAACGTGTCAGTATGAAAGGATGCTCAAGACTGAGACATA
TTCCATTTATGTCAACCAACATTAGGCAGATGGATATATCAGAGACGGCGGTTGAAGATGTGCCTGCATCAACCAGCATT
TGCGCTCGTCCTATGGATTACTCCATGATCGGCTGCCAAAAGCTTAAGGAAATAACACATCTCCCTCTATATATTGCATC
AAAGATCTTCGTCTACTACTTAAGCTAA |
AA seq | Len:756 aa
MASSSSFTSRNYSYNVFASFYGPDVRKTLLSHIREQFTRSGITMFDDQEIVRSATIAPSLTEAVRESRISIVILSKNYAS
SSWCLNELVEILECKKAMGHIVMTIFYGVDPSDVRKQTGEFGIAFSETCASKTKEEKQRWRQALNEVGNIAGEDFLRWSN
EAKMIKKISRDVSDKLNATRSRDFDGMVGLEPHLREMESLLDFDDDGVKVVAISGPAGIGKTTIARAVHSLHSYRFQLTC
FVDNLRGSHPISFDEYGLKLRLQEEFLSNILKQDGIRICHLGVIEERLHDQRVLVVLDDVNNIKQLEALAGDISWFGPGS
RVVVTTENKDLLHQHGINNTYHVGNSYPHDGFQEHALKVTDLCGNLPLGLRVVGSSLRGKKENEWEDVMKRLESVLDRDI
EEVLRVGYESLDENEQTLFLHIAVFFNYENGNLVKTMFAESDLDVKYGLKVLENRSLIELYNKKETINMHRLLQQVGIKA
IHKQEPWKRRILIDAAEIRDVLELAKGTRFVSGISFDISDIDEVSISPIAFKRMPKLRFLRVYKSKEGGNDVIHIPEEME
LPSRLRLLEWKAYPNKCLPPTFHPEYLVKLDMQGSQLEYLWQGTQPLTNLKEIDLQRSFQLNELPDLSNATNLKGLYLSY
CQSLVELPPSCSSLDKLKDLWMDHCTNLQVIPAHMKLASLKRVSMKGCSRLRHIPFMSTNIRQMDISETAVEDVPASTSI
CARPMDYSMIGCQKLKEITHLPLYIASKIFVYYLS* |
Expression(FPKM) | |
Classification(Core/Distributed) | |
Function classfication (GO) | GO:0005515 |
Pfam | Leucine Rich Repeat |
KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |
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