Gene Name | BnaC09G0210300ZY |
Gene Location | |
Gene Structure | |
---|
Protein Name | |
Alternative splicing | |
Homology | |
Best Hit (NR) | BnaC09g18950D [Brassica napus] |
Best Hit (SwissProt) | Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=1 |
NT seq | Len:3837 nt
ATGGCTACCTCCTCTTCCACAGTACCTCTTCAACATCAAGTCTTCATAAATTTCCGAGGGAAGGATCTACGCCGTGGATT
CGTAGGCTTTCTTGTTGATGCGTTGAAAAGGGAAAAGATCAATGTTTTTATGGACGAATTCGAAGAAAGAGGCCTCCCTT
TAGATTCCCTTTTGACTAGGATAGAGGGGTCGAGAGTTGCTGTGGCTATATTCTCTGAGAATTACACTGAATCAAACTGG
TGCTTGAAGGAGGCTGAGAAGATGAATGAATGCAGGGAGAAAGGCAATCTGGTGGTAATACCCATATTTTACAAGGTGGA
ACCATCCACAGTGAGAGGTTTGAAGGGAGATTTTGGTGATAAGTTATGGATTTTGGCCAAGGGTGATGAGAAGAGGAAGA
AACAGTTTGATGAAGCCTTGGAGTCGATTCCTAATCTATTCGGTATCACTGTGGACGATACAAGCGACGAGTGTCAGAAA
ATCAATGATATTGTCAAGGCGGTTAAGACAGTCTTGCTCAAGATTTCAGTGATAGAGAGCCAAGACGTCACTGGTGATTC
GTCAGAGACTAGTGATGATGGGACTGCCTCAGGAGGAAAAAAGCATAGGACTTTTGGAATGGAGAAACGTCTCAAGGAGC
TGGAAGATAGGTTTGGTAAACACAAAGAAACTCGTATCATTGGAGTTGTTGGGATGCCTGGAATTGGTAAAACCACACTC
ATGAAAGAACTCTTTGAGATGTGGAAGCCTAAGTTTGTTAGGCACGCTCGAGTCGACAAAATCCGTGTACAGGCGAAGGA
TTTGGGGTGTGATTTCTTGCCCACATTGCTTTTAGAAGAGCTATTGGGATTGGAAGATCCTCACACAGAGAATGTTGAGG
ACCCGTACGAAACCTACAAATGTCAACTGCTTGGACGCAAAGTTTTTGTCGTTCTCGATGATGTTAGTAACATGGAACAA
ATAGATGCTCTTCTTGGGAAACGTGACTGGATTAGTGACGGAAGCAGGATTGTCATTGCAACAAGTGACGCGTCCTTAAC
AAATGGTCTGGTTGAAGACACATACGTGTTCCAAAACCTGGACCATAGAGACAGCTTACAACTTTTTCGCTATCACGCCT
TCAGTGATGATCATCAATCCAATCCTCCCAAGGAAGATTTCACGAAGCTGTCAGAAGAGTTTGTACATTATGCAAGAGGC
CATCCACTAGCTCTCAAAATGTTGGGTGTAGAGCTATACAACAAAAATATAGATCATTGGAAATCGAAACTGAAGACACT
CTCTCAAAGTCTGATCCCTAATATTGGAAGGGTCTTCCAAATGAGTTATGATGAACTGCGTTCAGAGCATAAAGTTGCAT
TTCTTGATATAGCCTGCTTCAGATCGGAGAGTGTGGAATATGTAGAAAGTTTACTGGCTTTGTCTGACACCGAATCTCCT
GACACAATGAGTGCAGTAGAAGTCCTCAAGAATAAGTTTCTGATTAATACTTGTGACGGTCGAGTGGAGATGCATGATCT
ACTGTACACATTTTCAAGGGAGCTAGATCGTAAAGTATCCACTCAAGATGGTAACAGACAACAACGGAGGCTGTGGCTCC
ATCAAGACATAATGAAGGGAGGCATAATTAATGTTCTGCAAAATAAAATGAAAGCTGCCAATGTCAGAGGTATTTTTCTA
GACTTGTCTGAAGTGAAAGACCAGACGACCTTAGACTGCGAGCACTTCTTAAGGATGTGCAATCTCCGGTATCTTAAGTT
CTATAATTCTCACTGTCCTCAGGAATGTGAAACCAAAAATAAGATAAACATTCCTGATGGACTTAAGCTACCACTGAAAG
AGATCCGATGCCTCCACTGGTTAAAATTTCCACTGGAGGAACTTCCTAATGATTTCGACCCGATTAATCTTGTTGATCTC
AAGTTGCCCTACAGTGAGATTAAACAACTTTGGGAAGGCGAAAAGGATGTACCATCCTTAAAGTGGGTCGATCTCAATCA
CTCAAGTAAGTTATGCAGCTTGTCAGAGTTATCTAAGGCTCGAAATCTTCAACGATTGAATCTTGAAGGTTGCACGGCAC
TGAAAATTTTACCACGTGGTATGAAAAAAATGAAAAAGCTTGCTTCCCTGAATCTGAAAGGTTGCACAAGTCTTGAAACT
CTTCCAAAGATGAATTTAAATTCTTTGAGAACTCTTACTCTCAGCGGCTGCTCAAATTTTAAGGAATTTCCACTGGTTTC
AGAAAATATAGAGATTCTATACTTAGATGGCACATCAATAAGTCAGCTTCCTACGAACATGGAGAAGCTCCAGAGACTTA
TTGTACTGAATATGAAGAACTGCGAAAAGCTGGAGGAAATCCCAGTCGGGGTCGGTGAGCTGAAAGCTCTTCAGGAACTG
ATACTCTCTGATTGCTCCAAACTCGAGTATTTTCCAGATATCAAGATGAGCTCTTTAAACATTTTACTTTTGGATGGGAC
AGCCATAGAAGTGATGCCACCTTTACCTTCGCTACAGTATTTGTGCTTAAGCAGAAGTAAGATCAACTGTCTTCCTGCTG
GCATTACTCAACTTTTTCAACTTAAGTGGCTGGATTTGAAGTACTGCAAGAGTCTTACTTCTCTTCCAGAGCTTCCACCA
AACCTTCAGTGCTTAGATGCACACGGTTGTAGTTCGCTGAAGACAGTTTCGAAGCCTCTAGCCCGTATCATGCCAACGGA
GCAGAACCATTCCACATTCATTTTCACCAACTGTAAGAACCTGGAACAAGCTGCAAAGGAGGAAATCAGCTCGTATGCGC
AAAGGAAATGTCAGCTGCTGTCATATGCTCGTACACGCTACAATGGGGGTCTGGTTTCAGAGGCTTTGTTCAGCACTTGC
TTTCCTGGATGTGAAGTGCCTTCTTGGTTTTGTTATGAAACAGTTGGATCCGAGCTAGAAGTAAAACTCCTCCCGCATTG
GCATGACAAGAGGCTTGCTGGAATAGCTCTATGTGCTGTAGTGTCATTTCATGACTGCCATGATCAAATCAGCCGCTTGT
CAGTGACATGCACCTTTAAAGTTAATGTTGAAGACAACTCTTGGATCCCATTTACTTGCCCAGTAGGAAGTTGGACCAGA
CAGGGAGACGGAAAATACAAGATTGAATCAGACCATGTTTTTATCGGCTACACCAGTTGCCCATATACTATAACGTGTCC
TGAAGACGAGAACTCTGATAAATGCAGTTCCACTGAAGCCTCCCTTGAGTTTACTGTGGCAGGTGGTACAAATGAGAAGG
GAAAATTAAAGGTGTTGAAGTGCGGTTTAGGTTTGGTGTATGCAAAGGATAAAGGCAAAAATAGTTCTCATGAAGCAAAG
TATGATATGCCTGTGGAAGTGAGTTTTCAAGAAACTTCAAAAGAGGTTGACGGAGAAGGAGCAAAGAAAAGGAAAAAACC
GAGAGGTGATGATGGAAGGCCGAAGATGAAGAAAAAATCAAGAAGGGATGATAAAGTTCTGAGCATGGTTGATATTTCAT
CTACAGAACGCAGCGAACGTTCTGTCTCTTGCTTTGAGGAGACAAAGATTATTGTCAAGATACCGGCGATTTACTGGTCA
TACAAGACAGCTAGTCATGCTGCTGAACTAACTGTAGGGGGTAAAATATTCAGTGTCCTGGGCCACATAGGTCTTCTAGC
TGATCCAGAAGGTGGTCAATGCACAGCTTGGGACAAGGGACTTCTCATTGGCGGAGAGAATGTGATTACTTGTTTCGCCA
GAGAAGGCTGTACCAATAAACCATCCAGAGAGCTATCGCCTCTCCTTCTTCACTTTATCGCCAACCTTCTCCTCTAG |
AA seq | Len:1279 aa
MATSSSTVPLQHQVFINFRGKDLRRGFVGFLVDALKREKINVFMDEFEERGLPLDSLLTRIEGSRVAVAIFSENYTESNW
CLKEAEKMNECREKGNLVVIPIFYKVEPSTVRGLKGDFGDKLWILAKGDEKRKKQFDEALESIPNLFGITVDDTSDECQK
INDIVKAVKTVLLKISVIESQDVTGDSSETSDDGTASGGKKHRTFGMEKRLKELEDRFGKHKETRIIGVVGMPGIGKTTL
MKELFEMWKPKFVRHARVDKIRVQAKDLGCDFLPTLLLEELLGLEDPHTENVEDPYETYKCQLLGRKVFVVLDDVSNMEQ
IDALLGKRDWISDGSRIVIATSDASLTNGLVEDTYVFQNLDHRDSLQLFRYHAFSDDHQSNPPKEDFTKLSEEFVHYARG
HPLALKMLGVELYNKNIDHWKSKLKTLSQSLIPNIGRVFQMSYDELRSEHKVAFLDIACFRSESVEYVESLLALSDTESP
DTMSAVEVLKNKFLINTCDGRVEMHDLLYTFSRELDRKVSTQDGNRQQRRLWLHQDIMKGGIINVLQNKMKAANVRGIFL
DLSEVKDQTTLDCEHFLRMCNLRYLKFYNSHCPQECETKNKINIPDGLKLPLKEIRCLHWLKFPLEELPNDFDPINLVDL
KLPYSEIKQLWEGEKDVPSLKWVDLNHSSKLCSLSELSKARNLQRLNLEGCTALKILPRGMKKMKKLASLNLKGCTSLET
LPKMNLNSLRTLTLSGCSNFKEFPLVSENIEILYLDGTSISQLPTNMEKLQRLIVLNMKNCEKLEEIPVGVGELKALQEL
ILSDCSKLEYFPDIKMSSLNILLLDGTAIEVMPPLPSLQYLCLSRSKINCLPAGITQLFQLKWLDLKYCKSLTSLPELPP
NLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCKNLEQAAKEEISSYAQRKCQLLSYARTRYNGGLVSEALFSTC
FPGCEVPSWFCYETVGSELEVKLLPHWHDKRLAGIALCAVVSFHDCHDQISRLSVTCTFKVNVEDNSWIPFTCPVGSWTR
QGDGKYKIESDHVFIGYTSCPYTITCPEDENSDKCSSTEASLEFTVAGGTNEKGKLKVLKCGLGLVYAKDKGKNSSHEAK
YDMPVEVSFQETSKEVDGEGAKKRKKPRGDDGRPKMKKKSRRDDKVLSMVDISSTERSERSVSCFEETKIIVKIPAIYWS
YKTASHAAELTVGGKIFSVLGHIGLLADPEGGQCTAWDKGLLIGGENVITCFAREGCTNKPSRELSPLLLHFIANLLL* |
Expression(FPKM) | |
Classification(Core/Distributed) | |
Function classfication (GO) | GO:0005515 |
Pfam | Leucine Rich Repeat |
KEGG | protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like; K16226 disease resistance protein RPS4 (A) |
---|