Gene Name | BnaC09G0218700ZY |
Gene Location | |
Gene Structure | |
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Protein Name | |
Alternative splicing | |
Homology | |
Best Hit (NR) | PREDICTED: protein VARIATION IN COMPOUND TRIGGERED ROOT growth response-like [Brassica rapa] |
Best Hit (SwissProt) | Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1 |
NT seq | Len:3201 nt
ATGGCCTCTTCCCGCAATTGGCTATTCGATGTTTTCCCAAGCTTCAGTGGGGAAGATGTCCGTCAAACTTTCCTAAGCCA
TTTACTAAAGGAGCTTGATCGCAAACTGATCAGTGCTTTCAAAGACAGTGAAATCAAGAAAAGCCAGTCCATTGGCCCCG
AGCTGGAACAAGCCATTAGAGATTCAAGGATCGCCGTGGTAATCTTCTCGAAAAACTATGCATCTTCAAGCTGGTGCCTT
GATGAGTTGCTGGAAATCAAGAAATGTAAGGACATTTTTGGCCAACTTGTCATACCGATCTTCTACAGGTTGGATCCTAC
TCATGTCAGGAAACAGACCGGAGATTTTGGAGAGGTTTTTGAGAAGACTTGCCATAACAAAACAGAGGACAAGAAAAATC
AATGGAAGCAAGCGTTGACCGATGTTGCTAATATCCACGGATATCATTCTCGAAATTGGGGCAACGAAGCAAAAATGATT
GAACATATTGCCAATGATGTTTTGAATAAATTTCTTTCAACCACGTCCAAGGATTTTAATGACTTTGTCGGCATTGATGA
TCATATTGCTAAAATGAGTGTATTGTTGCATATGGAATGTGAGGAAGTGAGGATGGTTGGGATATGGGGTTCTTCAGGAA
TTGGCAAGACTACGATTGCAAGAGCTCTATTTAGTCGTCTCAGTCGCCACTTCCAAAGTAGTATTTTCATAGATAGAGCT
TTCATATCCAAGAGTATGGAAATTTATAGTAGAGGCAACCCGGATGACTATAACATGAAACTGAACTTGCAAAGAAATTT
CCTATCTGAAATTTTAGATAAGAAAGACATAAAGATTGATCATTTGGGAGCACTAGCAGAGAGGTTGAAATATCATAAAG
TTCTTATCATTATAGATGATTTGGATGATCAAGTAGTGTTAGATACTTTAGCTGGTCAAGCTCAATGGTTTGGACGTGGA
AGCAGAATCATTGCAATTACAAAAGATAAGCACATTTTAACGGCTCATGGGATCAATCATATTTACGAAGTCAAACTCCC
GTCTGAGAAACTAGCTCTCGAGATATTATGTCAATCTGCATTTAGGAAAAACACCCCTCCTCATGGTTACATGGAACTTG
CTTGTGAAGTGGTAGAGCGTGTTGATAGTCTTCCTTTAGGTCTTAATGTTTTGGGTTCACATTTGCGGGGGGAAGATAAA
GAGTATTGGTTGGATCAGTTGTCAAGGCTTCGAAAAGGTATAGATGGAAAAATCCATAAGACACTAAGAGTCAGCTACGA
TGGATTAAATAACAAAGAGGACAAAGCGCTATTTCGTCATATCGCATGCCTTTTCAACTATGCTGGTATCATTGAGATCA
AGAAGTTGCTAGCTGATAGTGACTTGGATGTTAACATCGGACTTCGAAACCTCAATGATAACTCTCTCATACAAATAAGA
AGGCAGACTGTGGTGATGCATTCTTTGCTACAAGAAATGGGTAAAGAGGTCGTTCGTTCACAGTCAAATGAGCCTGGAGA
AAGAGAATTTCTAACGGATTCGAAGGATATCTGTAATGTGCTTGAAGAGGACATTGGAAGTAGAAATGTTTTGGGTATAT
CACTGAATAAAGATGAGATAGATGAGAAACTGCATGTACATAACAGTTCGGATGCATATCCGATGAGATGTATGCCTTCT
AAGTTTTGTCCCAAGTATCTCGTGAAACTCAAAATGCAAGGGAGCAAGCTTGAGAAATTGTGGGAAGGAATTGGGAACCT
TACATGCCTCGACTATATGGATTTGTCGGAATCTGAAAACTTGAAAGAGATTCCAGATCTTTCTTTGGCAACTAATCTAA
AGACACTTAACCTCAGTGGTTGCTCGAGTCTGGTGGATCTTCTTCCTTTGTCTATTCGGAATCTGAATAAACTCATGACG
TTGGAAATGTCAGGATGCATAAATCTAAAGACTCTTCCAAGTAGCATCAACCTCCAATCTCTCGTTAGCGTAGATCTACG
GAAATGCTCCGAGTTAAACAGTTTTCCTGATATATCAACCAACATTTCAGATCTCGATCTAAATGAAACAGCTATTGAAG
AAATCCCTTCTAACTTGCGTCTTCAGAATCTTGTTAGTCTTCGCATGGAACGAATCAAGAGCGAGAGATTGTGGGCAAGT
GTGCAGGTATCTTTATTTTCTAGCATTGTGATAAACGGGGTTCTAGGTGACAGTGATCTTCCTTCTTCATTTCAGAATCT
CAATAAACTTGAGCAGTTGAGAATTACAGAATGCATATATCTCGAGACGCTTCCCACTGGAATGAACATAGAATCTCTGG
ATTACCTCGATCTCAGTGGATGCACAAGGCTGCGGAGTTTTCCTGAAATTTCAACCAACATCTCCACAATCTATCTAAAT
AATACAGGGATTGAAGAGGTTCCTTCCTGGATCGAGAATCTTTCTAAGCTCAGGTTTCTGTATATGAGGAAATGCTTCAA
GCTAAAATGTGTATCCCTTAACATTTGTAAAATCAAACAGCTTGAGAAGGCTGACTTTACAGTCTCAAGGATACATTCTA
ATAAAGCTAGCTGGTGTGACAAAGCTCTCCTTCAAGAACTCTCGGTTTTAAAGGGACTGATATTTCCAGGTGAAGAAATG
CCTTCATATTTCACTCACCGATCTATTGGATGCTCTCTGACCATCCCTCTACTCCACAACTCTCTCTCCATACCATTCTT
CAGGTTTAGAGCTTGCGCCATGGTTGAACTTGATCCTAGGCTGTATCCACTTTATCCCTACATTGTTATCCAGATATGTT
GCCGGTTCAGTGACAGATTCGGAAACAGTTTTCAGTTCTTTGGTCACCCACATAGCTTCACGCCTTATCATCAGAAGGGT
AGTCATCTGTTTATATTTGACTGCCGTCTCCTTCTAAACAGAGATAATGCTACTCCAGACGAACTTAATTACAATCAAGT
TTGCATTGAGTTCCGTATCATTGAGGACCGCTCTATTTTTATACTCAAAGGATGTGGTATACGAATCTTTGAAGATCATT
GCCCATCTCCGGATAACCAACCTGATAATGTGAGCTCCACGTTGGGTGTAGCTAGATGGGCTCTGCCACATCCTACCAAA
CGGAACGTCTTTAAAGATTTAACGTTGGCTCTCAATGGCGCAAAGCAGCAGTTTTTAAAACGCCGTGCACGTGGAGAATG
A |
AA seq | Len:1067 aa
MASSRNWLFDVFPSFSGEDVRQTFLSHLLKELDRKLISAFKDSEIKKSQSIGPELEQAIRDSRIAVVIFSKNYASSSWCL
DELLEIKKCKDIFGQLVIPIFYRLDPTHVRKQTGDFGEVFEKTCHNKTEDKKNQWKQALTDVANIHGYHSRNWGNEAKMI
EHIANDVLNKFLSTTSKDFNDFVGIDDHIAKMSVLLHMECEEVRMVGIWGSSGIGKTTIARALFSRLSRHFQSSIFIDRA
FISKSMEIYSRGNPDDYNMKLNLQRNFLSEILDKKDIKIDHLGALAERLKYHKVLIIIDDLDDQVVLDTLAGQAQWFGRG
SRIIAITKDKHILTAHGINHIYEVKLPSEKLALEILCQSAFRKNTPPHGYMELACEVVERVDSLPLGLNVLGSHLRGEDK
EYWLDQLSRLRKGIDGKIHKTLRVSYDGLNNKEDKALFRHIACLFNYAGIIEIKKLLADSDLDVNIGLRNLNDNSLIQIR
RQTVVMHSLLQEMGKEVVRSQSNEPGEREFLTDSKDICNVLEEDIGSRNVLGISLNKDEIDEKLHVHNSSDAYPMRCMPS
KFCPKYLVKLKMQGSKLEKLWEGIGNLTCLDYMDLSESENLKEIPDLSLATNLKTLNLSGCSSLVDLLPLSIRNLNKLMT
LEMSGCINLKTLPSSINLQSLVSVDLRKCSELNSFPDISTNISDLDLNETAIEEIPSNLRLQNLVSLRMERIKSERLWAS
VQVSLFSSIVINGVLGDSDLPSSFQNLNKLEQLRITECIYLETLPTGMNIESLDYLDLSGCTRLRSFPEISTNISTIYLN
NTGIEEVPSWIENLSKLRFLYMRKCFKLKCVSLNICKIKQLEKADFTVSRIHSNKASWCDKALLQELSVLKGLIFPGEEM
PSYFTHRSIGCSLTIPLLHNSLSIPFFRFRACAMVELDPRLYPLYPYIVIQICCRFSDRFGNSFQFFGHPHSFTPYHQKG
SHLFIFDCRLLLNRDNATPDELNYNQVCIEFRIIEDRSIFILKGCGIRIFEDHCPSPDNQPDNVSSTLGVARWALPHPTK
RNVFKDLTLALNGAKQQFLKRRARGE* |
Expression(FPKM) | |
Classification(Core/Distributed) | |
Function classfication (GO) | GO:0000166 |
Pfam | Leucine Rich Repeat |
KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |
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