Names & Information
Knowledge of BnaC09G0483400ZY:
| Gene Name | BnaC09G0483400ZY |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC09g44520D [Brassica napus] |
| Best Hit (SwissProt) | TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 |
| NT seq | Len:4161 nt ATGAGCAGCGGCGGGAGGAACTTCCCATCGAGAGGTCATCCATTTCGCCGGCCGCCGCGTTCCGCCACCAAACCGCAACG TCCGTCTTCGCTCTTGGCGCGGAAGCGGGAATTGAAGTTGAACGGAGGATCTCCTTCCTTTATCAGGTTTCCTCGTCGTA TCAAATGCTCCTCCTTCGATGCTTGTTCTTCTACAGCAGATGGCGCAGCTGGTTACCGTCGATTATCATCTCCCTCCGGT TCCCATTCCGAAGATATTGCTTGCGTTGTCGATGTTGATTATCGATCATCGGTTTCCTCCTCTTCTCCCGCCGCCGTTGC TGATTGTTCCGTCGCTGGTTACCGTCGATCATCAACTCCCTCCGGTTCCGAGCCGGGCGATGTTACATCTGTTGTTGATA ACCTCGATGCTAATTATCGATTATCCTCCCCCTCTTCTCCTGCCGCCGTTGCTGATTCTCAGTTGAAATACGATGTGTTT ATCAGTTTCCGAGGAAAAGATTCTCGTGACGGTTTCGTGAGCCACCTCTACGACGATCTGTGCCGAGAAGGCACTGAAAC TTTTATAGACAGTGAAAAGCTATATGCAGGCGAAGAGATCAAGACGGCGTTAACCGATGCGATTGAGCGATCGAGTATCT CGGTGGTGGTTTTTACCAAGGAATACGCCTCGTCCAAGTGGTGTTTGAGAGAGCTTGCAAAGATAATGGAGTGTAGGAGG AGCAGGGGCCAGCTAGTTTTGCCAGTCTTCCTCGGCGTAGAACCCATGGAAGTTAGGTGGCAGACGGGATGCTACGATGT GGCCTTTGCTAGGCATGATAAGGCTCCCGAGGGATCACCTTTAGCTGAGGAAGTAAAGCTGTGGAGGAAAGCCATGACTG AGGCAGCCGATCTCTCTGGATTTGATTCTACTGCTGTGAGGCCCGCTTCTAAACTTGTGGACAAAATTGTTGCACGCATT TTGGAGAACCTTGAAAGCAATTGCTTGCGTGAAGAGGAGGGCTTGGTTGGAGCTTATCCTCAGGTAAAAGAAGTGGAAGA GTTGTTGGAAAATGGATCAGATGAAGTGCAGACTATAGGAATACATGGACTTGGGGGTAGTGGAAAGACCGCCATTGCTG GTGCCGTTTTTAATCGTCAACATCAAAAGTTTGATAGCTATTGCTTCCTTGCAAATGTCAGAGAAGAATCTGAAAAGCAT GGGCTTCTTGGCTTAAGAAACGAACTACTACGTCAAATCCTTGGTCAGACTGATATAAACATTCCTACACCTGACATTGG ATCCAGCAATATAAGGAATCGTCTACGCCGGAAAAGAGTTCTTGTTGTTCTCGACGATGGAACTATATCAACTGAAGGCA TATGCCTGGACATTTCTGAAATAGAAGAGATGCAGATCGGCCGTCATGCTTTTGCAGGGATGCCTAATCTGAGGTCTCTG AAAATCAATTCTCACAGTCGGTTTAATGAAGAAAATTGCAAAATCTATCTTCCGGAAGGCCTTGAAGATTTCCCTCATAA ACTGCGTCTACTTCAATGGGAGTACTATCCTTTAGAAAATCTTCCATCAAGCTTTAAACCAAATCACCTGGTTGAACTTA TAATGCCCAAAAGCAAACTTGAGCGTTTGTGGGAAGGGGTACAGCATCTACCTTGTTTAAAAGTGATTGATGTCAGCAAC TCCCCGTTCCTGAAGGAGTTTCCAGACGTGTCAAATGCTCCCAGGCTTGAACTTATTGTTGCCAGAGGATGTGGAGATTT AGTGACCATTCCAACTCCAAAAAAGAAGTTGAAATCTCTTGAGCACTTGGATCTTTGTGGATGCTCAAAGATAACAGTTT TTCCAGAGATTTCATGGAATATCAAAACGTTGTCACTGGCTGATACTGGAATAGAGGAAATTCCACCATCAATTGAAAAC TTCCATCAGCTTGTTTACTTAGATATGAGAGGGTGCAAGATGCTCAAGAATGTTGCACAAATCGGTCACAAATTGGAGAA GCTAGAATTTTTGGATCTATCAGGTTGTTCTAGTGTTACAAGCTTTCCAGATATTTCTAACAATGTGGAAGTACTTATTC TCAATGGGACTGCCATAGAAGAGATCCCTTCCCATATCAAGTACATGAGAAGACTAGAGTTACTGGAGATAAAGAATTGT CCGAGGTTGAAGGGTCTTCCGATCAGTATATGGGAGTTACCGTCTCTTGTGGAACTTAATATTTCTGGATGTCCAAACTT CACAAGCTTTACTGAAATCACAGAGATAATGGCCAGTCTAGAGTATCTTTCTTTGAACGGAACGGCCATTACGGAGTTAC ATTCTTCAATTGAGAACTTGACTGGCCTTTCGTCTCTAGATCTTGAGAATTGCAGCAACCTCCTCAGTCTTCCGGACAAA TTATCCAAATTAAAGTTCCTGAAGGACCTTAATATCTCTGGCTGCTCAAATTTGGATAACTTGCCAAGAAGCATTGGAAA TCATGGATCTTTGGTTAATGTCAGAGCAAGAGGATGCAAAAGAGAAATTGCTAATTGTTTCGGGCCTGGCTTAATCTCAC TGAAAACTCTAGATTTAAGCGACTGTGGAATCACGGAGTTTCCCGAGGCTCTAACACTTATTTCTACCCTGACGGAGCTA GATCTAAGCCAGAATTGTTTCAGCGCAATACCTCCAAGCATCAAGGATCTTCAAGAGCTCCAAAGTCTCGATTTAAGCCA TTGCCAGGAGCTTCAATCTCTATCAGGGGTCCCAGCTGGTCTGACAAGGCTTAATGTTCTAAACTGCAGATCGCTGGAAA TGGTTGTACTCGGTAACTCTTCTGAGCTTCAGCTTTATCCTTTAAGCAATGTGGAAACCTTTGTGTTTGCTGATTGCCCA TCACTAAGCCATTATGCGATAGAAAATATCCAGGCATTTGCAAGACGCAGAATCTATGTTCTGGCATCCCATTTGGGTGT TACCTTAAACTTTAGAGGTGGCGACCTTTCTCTCAACAGTTGGATGAAACCACAACAACTGCGGTATTTACTCTCTAGCT TGTACGGATATGGAAGCCTCCACGAAGCACTGATAGGATTACATGCAGCTTTTTTCAGTAATGAACTGATATCAAAGGAG CATCCATCTAGGCTACTTAGTCGCATACTCCATGATTTTCATGAACGGTATAGGCTAAGTATTCAGGATATGCTGCACTT CTTCTCCTTGATCGCGCATCTATATTTGTATTACCAAGGAAAGCCTTCAACCAATTTCTGCTTTCCAAGTGCTGACATTC CTGAATGGTTTTGCCACCAAAGAAATGGGTCATTTATTGCGGTTATGGTTCAGCGTCCCGAACGTTCAGATGAGATTTCT ACTTTGGCAGGTTTTGCTATATCTGTTCTCGTTGCATTTGACGGCTACAATGATGACAAGGGTATCAGCATCAAATATGA ATGTCATTTCTATTCTAAATCTTCTGGCACTCGTGAGGGAGAAGGGTATTTGAGGGGATGGGATGGGAAAAAGGGGACGC CTTCGGCTATTGAAGGGGATCATTTGTTCTTGGGTTTTGATTCATCTATTCTATTTGGTGCGGCCAATGGAATCGAACAG TTTGTTGGATATTCTGAAGATCTTGTCAAAGCCACTTTTCAATGTTACATCGTTGATGAGGATGGGAATACTATCAATTC TTGCACGGTGAAGAAGTGTGCAATCCAACCACTCTATACCAGTGATATGACAAGGTCTCAGACGAAAATCTTAAGCAGAC AGGACATAACCAAAGGATTGACCACCAGGTTTGCAGGGTTTCTTGACAAGGTGTTGCGAAGTTTGGACCTATATGACGCA GTCTCATTAGGCATCATGAATGTTCTTGGTGATTTAAACGTAAATGTTGTCCATCAGGGTGGATATGTTTATATCACTAT AAAATGTGAAAACGCAGGCCTGCCTATAGGCCTTCAAATTTTGAATGTGCATCTTGGGACTGCACCACTTGCAGTCAAGC TAGTTGAAATGGCTGAACCATCTCGAGATCCAAGGGCGTTCTCAATTGAGTTCTCAGATGTAGACGGGGGGGATTTTGGT TGCAGAATCAAAGTTAAAAAATGCGAGTTCCGTCCTTTGCAGAGTCATGTCATGCTAATTGACAGATCTGCTGTTACGTA A |
| AA seq | Len:1387 aa MSSGGRNFPSRGHPFRRPPRSATKPQRPSSLLARKRELKLNGGSPSFIRFPRRIKCSSFDACSSTADGAAGYRRLSSPSG SHSEDIACVVDVDYRSSVSSSSPAAVADCSVAGYRRSSTPSGSEPGDVTSVVDNLDANYRLSSPSSPAAVADSQLKYDVF ISFRGKDSRDGFVSHLYDDLCREGTETFIDSEKLYAGEEIKTALTDAIERSSISVVVFTKEYASSKWCLRELAKIMECRR SRGQLVLPVFLGVEPMEVRWQTGCYDVAFARHDKAPEGSPLAEEVKLWRKAMTEAADLSGFDSTAVRPASKLVDKIVARI LENLESNCLREEEGLVGAYPQVKEVEELLENGSDEVQTIGIHGLGGSGKTAIAGAVFNRQHQKFDSYCFLANVREESEKH GLLGLRNELLRQILGQTDINIPTPDIGSSNIRNRLRRKRVLVVLDDGTISTEGICLDISEIEEMQIGRHAFAGMPNLRSL KINSHSRFNEENCKIYLPEGLEDFPHKLRLLQWEYYPLENLPSSFKPNHLVELIMPKSKLERLWEGVQHLPCLKVIDVSN SPFLKEFPDVSNAPRLELIVARGCGDLVTIPTPKKKLKSLEHLDLCGCSKITVFPEISWNIKTLSLADTGIEEIPPSIEN FHQLVYLDMRGCKMLKNVAQIGHKLEKLEFLDLSGCSSVTSFPDISNNVEVLILNGTAIEEIPSHIKYMRRLELLEIKNC PRLKGLPISIWELPSLVELNISGCPNFTSFTEITEIMASLEYLSLNGTAITELHSSIENLTGLSSLDLENCSNLLSLPDK LSKLKFLKDLNISGCSNLDNLPRSIGNHGSLVNVRARGCKREIANCFGPGLISLKTLDLSDCGITEFPEALTLISTLTEL DLSQNCFSAIPPSIKDLQELQSLDLSHCQELQSLSGVPAGLTRLNVLNCRSLEMVVLGNSSELQLYPLSNVETFVFADCP SLSHYAIENIQAFARRRIYVLASHLGVTLNFRGGDLSLNSWMKPQQLRYLLSSLYGYGSLHEALIGLHAAFFSNELISKE HPSRLLSRILHDFHERYRLSIQDMLHFFSLIAHLYLYYQGKPSTNFCFPSADIPEWFCHQRNGSFIAVMVQRPERSDEIS TLAGFAISVLVAFDGYNDDKGISIKYECHFYSKSSGTREGEGYLRGWDGKKGTPSAIEGDHLFLGFDSSILFGAANGIEQ FVGYSEDLVKATFQCYIVDEDGNTINSCTVKKCAIQPLYTSDMTRSQTKILSRQDITKGLTTRFAGFLDKVLRSLDLYDA VSLGIMNVLGDLNVNVVHQGGYVYITIKCENAGLPIGLQILNVHLGTAPLAVKLVEMAEPSRDPRAFSIEFSDVDGGDFG CRIKVKKCEFRPLQSHVMLIDRSAVT* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | hypothetical protein; K19613 leucine-rich repeat protein SHOC2 (A) |