Names & Information
Knowledge of BnaC09G0507700WE:
| Gene Name | BnaC09G0507700WE |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC09g44520D [Brassica napus] |
| Best Hit (SwissProt) | Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1 |
| NT seq | Len:2841 nt ATGAGCAGCGGCGGGAGGAACTTCCCATCGAGAGGTCATCCATTTCGCCGGCCGCCGCGTTCCGCCACCAAACCGCAACG TCCGTCTTCGCTCTTGGCGCGGAAGCGGGAATTGAAGTTGAACGGAGGATCTCCTTCCTTTATCAGGTTTCCTCGTCGTA TCAAATGCTCCTCCTTCGATGCTTGTTCTTCTACAGCAGATGGCGCAGCTGGTTACCGTCGATTATCATCTCCCTCCGGT TCCCATTCCGAAGATATTGCTTGCGTTGTCGATGTTGATTATCGATCATCGGTTTCCTCCTCTTCTCCCGCCGCCGTTGC TGATTGTTCCGTCGCTGGTTACCGTCGATCATCAACTCCCTCCGGTTCCGAGCCGGGCGATGTTACATCTGTTGTTGATA ACCTCGATGCTAATTATCGATTATCCTCCCCCTCTTCTCCTGCCGCCGTTGCTGATTCTCAGTTGAAATACGATGTGTTT ATCAGTTTCCGACGAAAAGATTCTCGTGACGGTTTCGTGAGCCACCTCTACGACGATCTGTGCCGAGAAGGCACTGAAAC TTTTATAGACAGTGAAAAGCTCCTTGCAGGCGAAGAGATCAAGACGGCGTTAACCGATGCGATTGAGCGATCGAGTATCT CGGTGGTGGTTTTTACCAAGGAATACGCCTCGTCCAAGTGGTGTTTGAGAGAGCTTGCAAAGATAATGGAGTGTAGGAGG AGCAGGGGCCAGCTAGTTTTGCCAGTCTTCCTCGGCGTAGAACCCACGGAGGTTAGGTGGCAGACGGGATGCTACGATGT GGCCTTTGCTAGGCATGATAAGGCTCCCGAGGGATCACCTTTAGCTGAGGAAGTAAAGCTGTGGAGGAAAGCCATGACTG AGGCAGCCGATCTCTCTGGATTTGATTCTACTGCTGTGAGGCCTGCTTCTAAACTTGTGGACAAAATTGTTGCACGCATT TTGGAGAACCTTGAAAGCAATTGCTTGCGTGAAGAGGAGGGCTTGGTTGGAGCTTATCCTCAGGTAAAAGAAGTGGAAGA GTTGTTGGAAAATGGATCAGATGAAGTGCAGACTATAGGGATACATGGAATTGGGGGTAGTGGAAAGACCGCCATTGCTG GTGCTGTTTTTAATCGTCAACATCAAAAGTTTGATAGCTATTGCTTCCTTGCAAATGTCAGAGAAGAATCTGAAAAGCAT GGGCTTCTTGGCTTAAGAAACGAACTACTGCGTCAAATCCTTGGTCAGACTGATATAAACATTGCTACACCTGACATTGG ATCCAGCAATATAAGGAATCCGGAAAAGAGTTCTTGTTGTTCTCGACGATCGACTTACTATGGTCCGGGAAGTAGAGTTC TTATTACAACAAGAGACATGAATGTAATCAAGAATGCTAGCAAAGTTTATTCGGTGAAAGGACTATCTGGCAGTGACTCG CTTGAACTGTTTTCACGTTGCGCCTTCAAACAGAGCTATCCTCCTGACGAATATTTGCAATTGTCGATGAGGGCAGCTGC TTATGCAAAGGGGCTCCCTTTGGCTTTAGAAGTTCTGGGTTCCTTTCTTTGTAAAAAAACTGTGCTAGAGTGGGAAAGCG CATTAAGAAGACTCGAAAGTTCTCCTGAGAAAGAAATCTCGAGAGTACTGCGTATAGGTTATGACGGACTCAATGATGAA GAGAAAACGATGTTTCTCGATATCGCTTGTTTCTTCAATGGGGAACAAAGAAGTCGCGTAACTGCTCATTGGGATGCTTG TGGTATATCTGTGGATATTGGGATACGCGCACTTCTTGATAAGTGTATGATTACCTTATCTGATGATAGGCTGCATATGC ATGAACTGTTTCAAGAAATGGGTAGAGAAATTGTACGGCAGGAGTCACCTCTGGATCCCGGTAAACGTAGCAGGCTGTGG AGCTCTGAGGATGGCCACGAAGTCTTAACAGAAAATACGGGAACTATATCAACTGAAGGCATATGCTGGGACATTTCTGA AATAGAAGAGATGCAGATCGGCCGTCATGCTTTTGCAGGGATGCCTAATCTGAGGTCTCTGAAAATCAATTCTCACACTC GGTTTAATGAAGAAAATTGCAAAATCTATCTTCCGGAAGGCCTTGACGATTTCCCTCATAAACTGCGTCTACTTCAATGG GAGTACTATCCTTTAGAAAATCTTCCATCAAGCTTTAAACCAAATCACCTGGTTGAACTTATAATGCCCAAAAGCAAACT TGAGCGTTTGTGGGAAGGGGTACAGCATCTACCTTGTTTAAAAGTGATTGATGTCAGCAACTCCCCGTTCCTGAAGGAGT TTCCAGACGTGTCAAATGCTCCCAGGCTTGAACGTATTGTTGCCAGAGGATGTGGAGATTTAGTGACCATTCCAACTCCA AAAAAGAAGTTGAAATCTCTTGAGCACTTGGATCTTTCTGGATGCTCAAAGATAACAGTTTTTCCAGAGATTTCATGGAA TATCAAAACGTTGTCACTGGCTGATACTGGAATAGAGGAAATTCCACCATCAATTGAAAACTTCCATCAGCTTGTTTACT TAGATATGAGAGGGTGCAAGATGCTCAAGAATGTTGCACAAATCGGTCACAAATTGGAGAAGCTAGAATTTCTGGATCTA TCAGGTTGTTCTAGTGTTACAAGCTTTCCAGATATTTCTAACAATGTGGAAGTACTTATTCTCAATGGGACTGCCATAGA AGAGATCCCGTCCGATATCAAGTACATGAGAAGACTAAAGGTACTGGAGATAAAGAAATTGTCCGAGGTTGAAGGGTCTT CCGATCAGTATATGGGAGTTACCGTCTCTTGTGGAACTTAA |
| AA seq | Len:947 aa MSSGGRNFPSRGHPFRRPPRSATKPQRPSSLLARKRELKLNGGSPSFIRFPRRIKCSSFDACSSTADGAAGYRRLSSPSG SHSEDIACVVDVDYRSSVSSSSPAAVADCSVAGYRRSSTPSGSEPGDVTSVVDNLDANYRLSSPSSPAAVADSQLKYDVF ISFRRKDSRDGFVSHLYDDLCREGTETFIDSEKLLAGEEIKTALTDAIERSSISVVVFTKEYASSKWCLRELAKIMECRR SRGQLVLPVFLGVEPTEVRWQTGCYDVAFARHDKAPEGSPLAEEVKLWRKAMTEAADLSGFDSTAVRPASKLVDKIVARI LENLESNCLREEEGLVGAYPQVKEVEELLENGSDEVQTIGIHGIGGSGKTAIAGAVFNRQHQKFDSYCFLANVREESEKH GLLGLRNELLRQILGQTDINIATPDIGSSNIRNPEKSSCCSRRSTYYGPGSRVLITTRDMNVIKNASKVYSVKGLSGSDS LELFSRCAFKQSYPPDEYLQLSMRAAAYAKGLPLALEVLGSFLCKKTVLEWESALRRLESSPEKEISRVLRIGYDGLNDE EKTMFLDIACFFNGEQRSRVTAHWDACGISVDIGIRALLDKCMITLSDDRLHMHELFQEMGREIVRQESPLDPGKRSRLW SSEDGHEVLTENTGTISTEGICWDISEIEEMQIGRHAFAGMPNLRSLKINSHTRFNEENCKIYLPEGLDDFPHKLRLLQW EYYPLENLPSSFKPNHLVELIMPKSKLERLWEGVQHLPCLKVIDVSNSPFLKEFPDVSNAPRLERIVARGCGDLVTIPTP KKKLKSLEHLDLSGCSKITVFPEISWNIKTLSLADTGIEEIPPSIENFHQLVYLDMRGCKMLKNVAQIGHKLEKLEFLDL SGCSSVTSFPDISNNVEVLILNGTAIEEIPSDIKYMRRLKVLEIKKLSEVEGSSDQYMGVTVSCGT* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | TMV resistance protein N-like; K19613 leucine-rich repeat protein SHOC2 (A) |