Names & Information
Knowledge of BnaC09G0533700GG:
| Gene Name | BnaC09G0533700GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: putative disease resistance protein At4g11170 [Brassica rapa] |
| Best Hit (SwissProt) | Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1 |
| NT seq | Len:3156 nt ATGGCTTCATCATCATCTCGCAGCCGGAGCTTACAGGTGTTTCCAAGCTTCAGGGGCGAAGACGTTCGGCGAACATTCCT CAGCCACCTTATCGGTGCTCTCGATCGCAAACTAGTCCGTACCGTATTCAAAGACAGTCAAATCGAGCGCGGCCACTCGA TCAGCCCAGCTCTTGTGCAGGCGATCAGAGACTCCAGGGTTTCCATCGTAGTGCTCTCCAAGAACTACGCTTCCTCCAGC TGGTGTTTAGACGAGTTGCTGGAGATCTTGAAGTGCAGGGAAGAGTTAGGTCAGATTGTTATGACGATCTTCTACGATTT GGATCCTTCTCACGTTAGGTATCAGATCGGAGAATTTGGCAAGGCCTTTGAGAAAACTTGCGAGAAGAAAACAGCAGATG AGACGAAACAATGGCGGCTTGCTTTAACGGAAGTAGCAAACATCCACGGACATCATTCTCGTAAATGGTCTGATGAAGCA CACATGATAGAAGATTTCGTCAATGATGTTTCATGTAAGCTGAATTGCTCACAATCATCATCTGAAGAGTTTGATGATTT GATTGGGATCGAAGCTCATATAGCAAACATGGTTTCACTGTTGTCTATGGATGCTGAACAAGTGTTGATGGTTGGGATTT GGGGTCCTTCGGGAATTGGTAAGAGTACCATTGCGAGAGTTTTATTTGGTAGACTCTCTTACCGATTCCAAAGGTGTGTC TTCATCGATAGATCCTTCGTCGACAAGACTCTAGAAAATTTCCGAAGAATCAACTTGGATGATTACGGCGTGAAGCTGCA ACTGCAAGAAAAATTTCTGTCTGAGATTTTAGACCACAAGGATGTGAAGATTGATCATTTAGGTGTGGTAGGAGGAAGGC TACAGAACCATAAAGTTCTTATAGTTCTCGACGATGTGGATGATCGATTGCTTCTAGATGCCTTAGTTGGACAAGCTCTT TGGTTTGGTTCCGGTAGCAGAATTATTGTGGTAACCAAGGATGTACACTTGTTAAGAAGCCACGGTATCGAACGTGTTTA CGAGGTGGGTTTTCCTTCCGAAGATCAAGCTCTCGAGATGTTCTGCCAATCCGCTTTTAAACGAAACTCTCCAGCTGATG GTTTCATGGATCTTGCCGTCGAAGTTTCGAAACTCGCCGGTAATCTTCCTTTGGGTCTTAACCTTTTGGGTTCTTCTCTG CGAGGGAGGAACAAGGAGGACTGGATCGACATGCTACCTGAGCTCAGGACTTGTCTGAATGGAGACATCGAGAGAACCTT GAGGTTCGGTTATGATCGGTTAAAGGAGACACATAAAAGGCTATTTCTTCACATAGCGTGTTTGTTCAACGGTGAAAAAG TTGATAGCTTAAAATGGTTGCTCGCTGATAGTGACGTTGATGTTAACACTGGTCTTAGAGTTTTAGTTGAGAGGTCGCTT ATACGTATAACAACACACTTGTGTAAAACTGTGGAGATGCATAATTTGCTGCAAGAAATGGGTAGAGGAATTGTATCTGC ACAGTCCTTTGACGAGCCTGGAGAACGTCAATTTCTGACTGATTCCAAGAATATATGTGATGTACTTGAGGATAGCACTG GTACCAAAGCTGTTTTAGGTATATGTTGGAACATATCAGAAATTGATGAGTTGTTCACGTTGGATGAGGATGCATTCAAA GGGATGAGTAATCTCCGGTTTCTTAAGATTTACAAGAACCCGTTGGAGCGTAATGAAGAAACAAAGTTGTACTTGCCCCA AGGCATACAATCTTTGTCTCGTCGACTTAGATTGTTACACTGGGATGCATATCCAATGTCACGTATGCCATCAGACTTTT CACCAGCCTATCTCGTTGAACTTGGTATGATAGATAGCGAGCTCGAGAAGATGTGGGAAGGGCCCCAACCACTTAAATAT CTTAAGAATATGAGCTTGTGGAGATCAAAAAAACTGAAAGAAGTCCCAGATCTTTCGAAAGCTCCCAATCTCGAGGAACT GTATCTTGCTGATTGCCAGAGTCTACAGATGCTTCCTTCTTCTATTCGGCATCTCAAGAACCTCAAGACTTTGAACTTGG AAGAGTGCAGAAAGCTCGAGGTTCTTCCAACAAACATCAACTTGGAATCTCTCTCTAACCTGACTCTCTATGGATGCTCA CTGATAAGGAGCTTTCCCGATATTTCGCGCAACATTTCAGTTCTCTCTCTAGAGAACACGGCGATCGAAGAAGTTCCTTG GTGGATTGAGAAGATGACTGGTCTTACCGGCCTATTCATGAGTGGCTGCAGCAAGTTAAGCCGTATCTCGCCGAATATAT CTAAACTCAAACATCTTGAGGATGTAGATTTCTCCTTGTGCTATGCATTAACTGAAGACAGCTGGCACGACGATCCTCAG GTGGTGCCTGCTCCTAATCCTATTGGAGATTTAGACATGTCTGATAACACTTTCACTAGACTTCCACACTCATTGGTTTC CATTAAACCCCAGGAGCTTAACATAGGCAACTGCAGGAAGCTCGTGTCGCTGCCTGAGCTACAGGCGTCGTCACTCAAAA TACTACGCGCACAAGATTGCGAATCACTCGAGAGTATATCTCACCTCTTTCGAAACCCGGAAACCATTCTTCATTTCATT AACTGCTTCAAACTTGAACAAGAGTCCCTCATACGAAGTTCAGTTTTCAAGTACATGATCCTACCTGGTGGACAAGTGCC CCCCGAGTATTTCACTCATCGAGCTAGTGGAAGTTACTTGACGATCCCTTTACGTGAGAGCTTTCTCCATGGATGTTTTC TGCGGTTTAAGGCTTGTCTCTTGATTGACACCGATTCTACTAAGCCCACTTGGGTCAAAAGCATTATCCGGGTGTGTTGT CTCCTCAAAGGAAACCAAGGGAACCACTTTCACTCTAGTGATCTTCATATTCTCATCTTCTTTACACGTCTGTTGGACCG TCATCTAGCTATATTTGACTGTTCTTTCCCTTTAGACAATCCTCTAGCCAAATCGAACTATGACGCGGTGGAAATAAAGT TTGGATGGGATGCTTGCGAAATTAAAGAATGTGGTATACAATTCTTCTCTCCGTCCTCGGATAGTCAGCCTGGTGATGCA AATAAGCTATCTGAAGAGAACAGTGTAGACAGCTGA |
| AA seq | Len:1052 aa MASSSSRSRSLQVFPSFRGEDVRRTFLSHLIGALDRKLVRTVFKDSQIERGHSISPALVQAIRDSRVSIVVLSKNYASSS WCLDELLEILKCREELGQIVMTIFYDLDPSHVRYQIGEFGKAFEKTCEKKTADETKQWRLALTEVANIHGHHSRKWSDEA HMIEDFVNDVSCKLNCSQSSSEEFDDLIGIEAHIANMVSLLSMDAEQVLMVGIWGPSGIGKSTIARVLFGRLSYRFQRCV FIDRSFVDKTLENFRRINLDDYGVKLQLQEKFLSEILDHKDVKIDHLGVVGGRLQNHKVLIVLDDVDDRLLLDALVGQAL WFGSGSRIIVVTKDVHLLRSHGIERVYEVGFPSEDQALEMFCQSAFKRNSPADGFMDLAVEVSKLAGNLPLGLNLLGSSL RGRNKEDWIDMLPELRTCLNGDIERTLRFGYDRLKETHKRLFLHIACLFNGEKVDSLKWLLADSDVDVNTGLRVLVERSL IRITTHLCKTVEMHNLLQEMGRGIVSAQSFDEPGERQFLTDSKNICDVLEDSTGTKAVLGICWNISEIDELFTLDEDAFK GMSNLRFLKIYKNPLERNEETKLYLPQGIQSLSRRLRLLHWDAYPMSRMPSDFSPAYLVELGMIDSELEKMWEGPQPLKY LKNMSLWRSKKLKEVPDLSKAPNLEELYLADCQSLQMLPSSIRHLKNLKTLNLEECRKLEVLPTNINLESLSNLTLYGCS LIRSFPDISRNISVLSLENTAIEEVPWWIEKMTGLTGLFMSGCSKLSRISPNISKLKHLEDVDFSLCYALTEDSWHDDPQ VVPAPNPIGDLDMSDNTFTRLPHSLVSIKPQELNIGNCRKLVSLPELQASSLKILRAQDCESLESISHLFRNPETILHFI NCFKLEQESLIRSSVFKYMILPGGQVPPEYFTHRASGSYLTIPLRESFLHGCFLRFKACLLIDTDSTKPTWVKSIIRVCC LLKGNQGNHFHSSDLHILIFFTRLLDRHLAIFDCSFPLDNPLAKSNYDAVEIKFGWDACEIKECGIQFFSPSSDSQPGDA NKLSEENSVDS* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |