Names & Information
Knowledge of Bnascaffold0027G0000400ZS:
| Gene Name | Bnascaffold0027G0000400ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA01g32130D [Brassica napus] |
| Best Hit (SwissProt) | Disease resistance protein RPS6 OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1 |
| NT seq | Len:2973 nt ATGGCCACTTCTTCCTCTTGCAATTGGGTATTCGACGTCTTCCCGAGCTTCAGCGGAGAAGATGTCCGTAAAACATTCCT CAGCCACCTTCTCCTATCCCTCGATCGCAAACTAATCACTTGTTTCAAAGACAACGAGATAGAGAGAAGCCAGTCCATCG GCCTGAAGCTAGTACACGCGATCAGAGATTCGAGGATCGCTATCGTTGTCTTCTCCAAGACATACGCCTCTTCCACCTGG TGCTTGAACGAGTTGCTGGAGATCATCAAATGCAAGGAAGAGAAAGGGCAAATGGTGATTATTCCAGTGTTCTATGGTTT GGATCCATCTCATGTCAGGAAACAGACAGGCGAGTTCGGAGAGACGTTTCAGATGATTTGCAAGAACAGATCAGATGAGT TGCCTGATCTATGGAAAGGAGCTTTGACACATGTAGCAAATATCCATGGATATCACTCTGACAACTGGAGTAACGAAGCA CATCTGATTGAAGACATCACCAATGATGTTTTGGGTAGACTTGTTAGTTTAACACCGTCAATGGGGTTTGCTGACTTTGC TGGAATAGAAGATCATATAGCTAAGATGAGTGTATTGTTGCAGTTGGAATCAGAGGAAGTGAGGATGATTGGGATATGGG GTCCCGTTGGGATTGGGAAGACTACCATTGCAAGAGCTCTGTTTGGTCGAATCTCTCGTCACTTCCAAAGTAGCATTTTC ATAGACAGGGCTTTCGTATCAAAGACTATGGAAATCTTCAGGACAGCCAATCCAGACGACTACAACATGAAGTTGCGCTT GCAAGAATGTTTCCTGTCTGAGATTTTAAACAAAAAGGATATAAAGATACATCACTTAGGCGTGGTCGGAGAGAGGCTAA AGCACAAGAGAGTTCTTGTAGTACTTGATGATTTGAGTGATCAACTAGTGCTAGATTCCTTGGTTGGTGGAACTCAATGG TTTGGATGTGGGAGCAGAGTTCTCGTCGTTACAAAACACAAGCATGTACTGAGAGCTCATGGGATTGATCTTATTTACGA GGTTGGTCTCCCATCTGATGAGCTAGCTCTAGATATGTTTTGCACATATGCATTCAGGGAGAACTCCCAACGCGATGGAT TTAACGAGCTTGCTTCTGAAGTGGCCAAATTCGCGGGTAATCTTCCTTTGGCTCTTAACGTTTTGGGGTTGTACTTGCGA GGGAGGGACAAAGAGGATTGGTTAGATATGTTGCCTAGGCTTCGGAAAGGACTAGATGGGAAAATCAAGAAAGCACTCAG AGTTAGCTATGATGGGTTAGGCTGCAAAGAAGATAAATCACTGTTTCGTCACGTTGCATGTCTTTTTAATGGTATGGAAG CCAATGACATCAAGATGTTACTTGCTGATAGTGGCTTGGATGTTAATATCGGGCTTAAAAACTTAATCGATAACTCGCTT ATACATGAGAGAGGGAGCTGTGTGCATATACATTGTTTGGTACAAAGAATGGGTAAAGAAATCGTCCGTACACAGTCCAA CAAGCCTAGAGAACGAGAGTTCCTGATGGATTCTAAGGATGTTTGTGATCTATTTAATGGTAACTCTGATAGTAAAAAGG TTATGGGTATATCATTGAATCTAGCAGAGTTGTATGAACTGTTACGCATCGATAAGAAGGCCTTCAGAAGATTACGTAAT CTCCGTTTCTTGAGAATATACAGGGACTCACTGGACTTGCATAAACAAGTGAGATTGCATTTACCAGGAGGCCTCGATTA TTTGTCCCCTAAGCTCAAGTTGCTTTGTTGGGATGAATATCCATTGCCATGTTTGCCTTCGAGCTTTTGTGCTGAGCACC TTGTTGTGCTCAGAATGCGAAACAGCAAGCTCGAGAAACTGTGGAAAGAAGATGAGTCACCTACATGCCTGGAGGTTATG GTGGCAGTTCCTCAGCCTATTTGGATGCTCAATGAAGTATATATGCAAGTTTGCACAGAGCTGGAGGCTCTTGTTCATAC TGGCATCAACCTGGAATCTCTTTATAGGCTTGATCTTAGTGGATCCTCAAGGTTTAGGACTTTTCCTTATATCTCAACCA ACATCTCATTTCTTATTCTAAACCAAACCGGTATCAAAGAAGTTCCTTGGTGGATAGAGAACTTCTCAAGGCTTGTATGC TTAGAGATGTGGGAATGCAAAAGTTTAAACTATATATCACCAAACATTTCCAAACTGAAACTGCTTGAGAAGGTTGACTT TTCAAACTGTGGGGCACTGACTGATGCTAGTTGGCTTGACCGTGAAGCAAACGCTATTCACACTAAGTTACCAGCGCTCA GTTTCATCAACTGCTTCAAATTAGATCAAGAAGCTCTCATTCAACAATCAGTTTTCAAGTACTTGATCTTGCCAGGTGGA AAAGTGCCTTCACATTTCACCAACCAAGCTACCGGAAGCTCTCTGGTCATCCATCTACTTCAGAGCTCTCTCTCTCAACA GCTCTTGGGGTTTAGAGCTTGCCTTGTGGTTGACGCCAACGAGCCTAAATCCAAAATTTCTAGCTGGATTATAAGTTGTC ACCTCACAGGAAAAGACAGGAGCTCCTTTCGTTCCTCTGATTGTCAGCTTGACATAGAGTTGCCGCGTCAGATGGATAAT CATCTGGTTATCTTCGACTGTTGTTTCCCTCTAAACAAAGACAATGATTCTCTAGCTGAACTGAACTACGATCCAGTGGA TGTAGAGATTAAATTCACTAGTGACTCTTGTTGCGAAATTAAAGGATGTGGAGTACATTGTTTTTCGGACAAACAACTTA GTAATGTTTGTGAAGCTGATAAAAGCAACATGGTTACTGCTGAAGAGTTTGGAAAGAGCAGTACAGCGGCAAGGAGACGT AGGAAGCGTTTGCGGGTAACGGGAAAGACCATTCAAGAAAGTACGGACTTGAGCTGCAGCCAAACCGTCGAGGAACACTG GATGTATGTTTGA |
| AA seq | Len:991 aa MATSSSCNWVFDVFPSFSGEDVRKTFLSHLLLSLDRKLITCFKDNEIERSQSIGLKLVHAIRDSRIAIVVFSKTYASSTW CLNELLEIIKCKEEKGQMVIIPVFYGLDPSHVRKQTGEFGETFQMICKNRSDELPDLWKGALTHVANIHGYHSDNWSNEA HLIEDITNDVLGRLVSLTPSMGFADFAGIEDHIAKMSVLLQLESEEVRMIGIWGPVGIGKTTIARALFGRISRHFQSSIF IDRAFVSKTMEIFRTANPDDYNMKLRLQECFLSEILNKKDIKIHHLGVVGERLKHKRVLVVLDDLSDQLVLDSLVGGTQW FGCGSRVLVVTKHKHVLRAHGIDLIYEVGLPSDELALDMFCTYAFRENSQRDGFNELASEVAKFAGNLPLALNVLGLYLR GRDKEDWLDMLPRLRKGLDGKIKKALRVSYDGLGCKEDKSLFRHVACLFNGMEANDIKMLLADSGLDVNIGLKNLIDNSL IHERGSCVHIHCLVQRMGKEIVRTQSNKPREREFLMDSKDVCDLFNGNSDSKKVMGISLNLAELYELLRIDKKAFRRLRN LRFLRIYRDSLDLHKQVRLHLPGGLDYLSPKLKLLCWDEYPLPCLPSSFCAEHLVVLRMRNSKLEKLWKEDESPTCLEVM VAVPQPIWMLNEVYMQVCTELEALVHTGINLESLYRLDLSGSSRFRTFPYISTNISFLILNQTGIKEVPWWIENFSRLVC LEMWECKSLNYISPNISKLKLLEKVDFSNCGALTDASWLDREANAIHTKLPALSFINCFKLDQEALIQQSVFKYLILPGG KVPSHFTNQATGSSLVIHLLQSSLSQQLLGFRACLVVDANEPKSKISSWIISCHLTGKDRSSFRSSDCQLDIELPRQMDN HLVIFDCCFPLNKDNDSLAELNYDPVDVEIKFTSDSCCEIKGCGVHCFSDKQLSNVCEADKSNMVTAEEFGKSSTAARRR RKRLRVTGKTIQESTDLSCSQTVEEHWMYV* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |