Names & Information
Knowledge of Bnascaffold0291G0000200ZS:
| Gene Name | Bnascaffold0291G0000200ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA01g10040D [Brassica napus] |
| Best Hit (SwissProt) | Disease resistance protein RRS1 OS=Arabidopsis thaliana GN=RRS1 PE=1 SV=1 |
| NT seq | Len:4473 nt ATGGACAGACTCCGCGCTCTCCGCCGTCAGGGATTGCGCGATTTCGAGCCGTCACTCCCGCCGCGATTTATGGATAGAAT CCTCGACCGTATGAAGAAATCTTCGAGTCGGAGGGGGATAAGCCGCCGCCGGCTAGAACGGTGTTCTAGCTCCTTAGCTG AAGATCTATCAGTCTCGACTTCTTCTTTCACGACGCGCTCTCTGGAGTTACCCGATAGGACTAGTTTCCGTCTCTTAGCA GGAGGCGGCGATGGCGAATTGGATCGGATTTACAAGTCCCTTGGCGTTTCTGGTCCCGACGATTTGGCGATTTCTTTTGA CGCGTGGGAGGCTTGCAAGACGCGTTCCTCCTCTGGTATTGTTAATAGGTTTCAGCCTCAGGCCGATGTTTTGAGTAGTG GTGTTGATTCACTGGATCGGGACGATACTGGTGGTGTGGGCAGGTTCTTCAAGGAGCATGCGAGTGAAAAAGCTAGTGAG AAAGAGCATGGCGAGATGAATCTCAAGGAAGTTGAAACTCCTTTCCAGCCAAAACTATCTGAGCATTGCGTTACGGGGTC TGACCCTATATTAGTTATTTATTGTGGTGACAACCAGGTCTCCGAGGAGATATACCTCATCAGCTACATCTTCAACGAGT TGTGTGCCCGTGGCTTTGCCCCTTTGAGATATGATATGAAAAAGAGCACTGTGACTGAAAATCAGAAACTGCTACACATA TCACGGGTTGGTATTATCATTTTCTCGATGAACTTTGCTCATTCCAGAGAGTGTCTGGATGGATTCGTGGCAGTCATGGA TCATTTGAAAGCTAACGAGCTTGTGCTTATTCCTGTGTTTTTTAAAGTAAGTGTTTCAGACGTCAGGGGCCAAAGTGGCT CTTTTGGAAAAGCATTCACACGACTTGGGGATTCAGTCATGGCCTCCCAAGTTCTGAAATGGAGGGCGGCTATGATCAAA TTAGCTTCCATCATTGGATATGCGTATAAGAAGGGGGATGAGGTTATTCTGGCCAAGAATATTGTCAGAGATGTCTGTTT GCCGCTCAGTTCCGAAACCAACATGAAGCTAAGAGGAACGAGGCTTTCATTAAAAAGTATATTGTCTCTGCTGAATCGTT CTCAACCCTCATCTTCACAGATTGTTGGACTTTGGGGTATGGCTGGCATAGGGAAGACTACCATCACGAGAGACTTTTTC AGATCACAAGCTGAGCAATATGACGTGTGCTACTTTCTGCCTGACTTTCATCTATTGTGTCAAACAAAAGGGCTGAGTTA TTTGCGTGATGATTTCTTCTCGAAAATATTTGGCGCAGAGAAAGTTTTCGTAGACGCATGTGATACAAAACCAAGCGTCA CAAGGGATAGGTTCCTCGGTAAAAAGGTTCTGATTGTTCTTGATGGTGTGAGTAGTGCCAAAGATGCAGAAGTTTTGGTT GGAGGGTTTGGCTGGTTTTCTGGTGGACATACAATCATCTTAACATCTAGGAATAGGCAAGTTCTTGTACAGTGTAACGC CAAAGTGATTTACGAGATCGAGAAGCTACCCAAGCTTGAGTCTCTTCACCTTTGTTGCAAGTTTGCCAGTAAAGAAAATT GTAAAGGAAGAATGTCGTTGACATCGGAGCTTGTGGACTACGCTAGTGGCAATCCTTTGGCTCTGCGAGTCTTAGGTTTG TCTATTCAAAATCAATCTATGAAAGATCAGAAACAACATCTGAGAAGACTGCGTCAACATCCTCCAGTCAAAATTCTGAA TGCATTTAAAATAAGTTTTAATGGACGAGATGATGACGAGAAGAGCATATTTTTGGACCTGGCTTGTTTTTTCAGAGGGG AGGATAGAGATCGTGTGGTGAAAATCCTTGATGGTTGCGGTTTTTCTACAGATTTAGGAATCTATGGTCTCATTGATGAG TCTCTCATCAGCCTTGTAGATAACAAGATAGAAATGCCCAACATTTTCCAAGACGCGGGTCGATTTGTTGTTTGTCAAGA ACACGAAGAGCCAGGCAACCGTAGCAGATTGTGGGATTCTAGTGACATTGCTGGTGTCCTGAAAAATAATACAGGAACAG AAGCAACTGAGGGAATATTTCTGGATGCATCTGGCTTGACATTTGATTTGAGCTCTACTGCATTTGAGAGGATGTATAGA CTTAGATTGCTCAAGATCCACTGTCCAACTTCTGTAAATCATTGCAAGGTTTGTCTACCTGAAGGCCTCCACTCTTTGCC TGATGAGCTACGCCTACTCCACTGGGAAAAATATCCTCTTGGATCGTTACCTCGGAACTTCAACCCTAAAAATCTTGTAG AACTGAACATGCCATATAGCAACTTGACAAAAGTATGGAAAGGAACAAAGAATCTTGAGAAGCTAAAGAGGATCATTCTG AGTCACTCTCAACAGTTGACTAAATTCCCAAGGCTTTCAAAGGCCAGGAACCTTGAGCATATTGATCTCGAAGGATGTAC GAGTCTGGTTAAGGTTAACTCATCTATTCTTCATCACAAGCTTACTTTCTTGAGTCTGAGAAACTGTTCTCGTTTGCGAG TTATGCCTACCACGGTTCATCTAAAATCTCTTGAGGTTCTTAATCTATCTGGCTGCTCAGAGCTCGAGAACCTTCAGGAT TTCTCATTAAACCTGAAAGAAATATATCTAGCTGGGGCTGCTATTAGAGAAATTCCGTCGTCGATTGGGGATCTCACTAG ACTTGTTACATTAGATCTGGAGAACTGTGAAAGTCTCCAGCACCTGCCACCGGGGATAAGTAACTTGAAAGCCATGATGA CACTTAAGCTGTCTGGCTGTTCAAATCTGAAGAGCCTTCCAGTTCTTGATGCATTATTTCTCCAAGATTCACAACGTTCT AACACAAGGATAACCATGGAAGAATCTGTGTCCATAAACCTTCACTCTGCTATTCAAGAATCAAGGTTAGATGGCTCTAA AACCCTTCTGAAGTTAGATAATTTGCAACTGAGATCAGATATTCACGGTTCTTTTTTCAGCAGAGAAGCATTCTTACCAG CATTTGAATATCTATCAAACAACGGAATACCACAAGAAAGCTGGACACGGGTCACTGTTATTCCGTTCCCCTCACCCATT TTACACTCATTGGCGTCTAGGCTATATGCGCTAGTATCGTTGTTCCTTTGTAATGCTTACCTGGTGGATATACCTGAAGA TATATGTTGGCTTGCTTCGGTGATGAGACTAGATCTTGGTGGAAACTCTTTCAGCCAGATTCCTAAAAGCATCAAGGAGT TTCGTAAACTACATAGCCTTAATTTGCGCCATTGCAAAAACCTCAAATCGCTACCTGAGCTTCCTAGAAGTCTAGTAACC TTGAACGCCCATGGCTGCGTGTCTCTCAAATCATTTCCAACGAGTTTCGAGCAGTTCCCAAGGCACTTCACATTCAGTAA TTGCTTTAATCTGTCCCCAAAAGTGGTTAGAGAATATATAGGAAAAGCTCTTGATAGCGTTAAAGGCATGGCCAAGGGGA TTCTGCAGGCTTCACTGGAACAGGAACACATCAACGATCCTGCATTCAACATCTGTATACCTGCCTCTGCAGGCCAGCAA TCCTCGGTTAATTTTCAAGCTGGTTCTTCTGTAAGGATACAGCTAGCTCCTGGCATGTTAAAGACTCTCTCAGGCTTTGT TTTATCAGTAGTAGTTGAATTTTGGGATAATTATAGCAACACTGCTGGTTTTGGCATCAAGTGTATATGCAGGAAGAGCA GAATAGACCTCTCGCCTAGATTAGAGAGAATTTTCCATTGTTGGGCTCCAAAGGAACCTATCACCGTTCAACGGGATCAT ATGTTTGTTTTTGGGAGTGTGAAAATGCATCATGCAGAAGCTGTTAACCATGATTTCCTGTCTGATTCAGTGACCTTTGA GTTCCATCCTGTCAATTCGGAGAACCAGCTCGTAGATGATAGCTGCACAGTGAAGAGATGTGGAGTGTATTTAATCACCG ATGCGACAAGTAATACGGCTCTAAGCGCAAAACGCCCTTCTTCTTCCATGGATCCAGGGGGGCTTTCTAGCATGGAGCAT GTGGCACCGCCATATAAGAAATGTCGATTGAAGGGAGTTATTGAAATTGTTATTCTAAGCTTAAGAAAAAGGAAGCGAGA ACTGAGCGTCCCTACAGTCAAAAACGTTTCTACGGTAAGACGTCTGTGCAGATCGTATGTTCGCACTGGAAGCTGTGCAG TGGGTCCTAGTTGTTCTTTTGATCATCCGAACTGGGTGTTAACACACAAGACCGCATCTTCCATTCCTTCCGAGAGTCCA CCCATGGATATGCTAGGACTTTCTTCATATGGTAAGCCATCAGATAAGCGCGTGGAAACATCAACTGAGAAACCCAAAAG ACTCTCTGTGTCTGAGTCAAGACAAGCAACCTCTGGTATAGACACCATTGATGCAGAGCAGGAAGAAGAGTAA |
| AA seq | Len:1491 aa MDRLRALRRQGLRDFEPSLPPRFMDRILDRMKKSSSRRGISRRRLERCSSSLAEDLSVSTSSFTTRSLELPDRTSFRLLA GGGDGELDRIYKSLGVSGPDDLAISFDAWEACKTRSSSGIVNRFQPQADVLSSGVDSLDRDDTGGVGRFFKEHASEKASE KEHGEMNLKEVETPFQPKLSEHCVTGSDPILVIYCGDNQVSEEIYLISYIFNELCARGFAPLRYDMKKSTVTENQKLLHI SRVGIIIFSMNFAHSRECLDGFVAVMDHLKANELVLIPVFFKVSVSDVRGQSGSFGKAFTRLGDSVMASQVLKWRAAMIK LASIIGYAYKKGDEVILAKNIVRDVCLPLSSETNMKLRGTRLSLKSILSLLNRSQPSSSQIVGLWGMAGIGKTTITRDFF RSQAEQYDVCYFLPDFHLLCQTKGLSYLRDDFFSKIFGAEKVFVDACDTKPSVTRDRFLGKKVLIVLDGVSSAKDAEVLV GGFGWFSGGHTIILTSRNRQVLVQCNAKVIYEIEKLPKLESLHLCCKFASKENCKGRMSLTSELVDYASGNPLALRVLGL SIQNQSMKDQKQHLRRLRQHPPVKILNAFKISFNGRDDDEKSIFLDLACFFRGEDRDRVVKILDGCGFSTDLGIYGLIDE SLISLVDNKIEMPNIFQDAGRFVVCQEHEEPGNRSRLWDSSDIAGVLKNNTGTEATEGIFLDASGLTFDLSSTAFERMYR LRLLKIHCPTSVNHCKVCLPEGLHSLPDELRLLHWEKYPLGSLPRNFNPKNLVELNMPYSNLTKVWKGTKNLEKLKRIIL SHSQQLTKFPRLSKARNLEHIDLEGCTSLVKVNSSILHHKLTFLSLRNCSRLRVMPTTVHLKSLEVLNLSGCSELENLQD FSLNLKEIYLAGAAIREIPSSIGDLTRLVTLDLENCESLQHLPPGISNLKAMMTLKLSGCSNLKSLPVLDALFLQDSQRS NTRITMEESVSINLHSAIQESRLDGSKTLLKLDNLQLRSDIHGSFFSREAFLPAFEYLSNNGIPQESWTRVTVIPFPSPI LHSLASRLYALVSLFLCNAYLVDIPEDICWLASVMRLDLGGNSFSQIPKSIKEFRKLHSLNLRHCKNLKSLPELPRSLVT LNAHGCVSLKSFPTSFEQFPRHFTFSNCFNLSPKVVREYIGKALDSVKGMAKGILQASLEQEHINDPAFNICIPASAGQQ SSVNFQAGSSVRIQLAPGMLKTLSGFVLSVVVEFWDNYSNTAGFGIKCICRKSRIDLSPRLERIFHCWAPKEPITVQRDH MFVFGSVKMHHAEAVNHDFLSDSVTFEFHPVNSENQLVDDSCTVKRCGVYLITDATSNTALSAKRPSSSMDPGGLSSMEH VAPPYKKCRLKGVIEIVILSLRKRKRELSVPTVKNVSTVRRLCRSYVRTGSCAVGPSCSFDHPNWVLTHKTASSIPSESP PMDMLGLSSYGKPSDKRVETSTEKPKRLSVSESRQATSGIDTIDAEQEEE* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
| KEGG | RRS1; disease resistance protein RRS1; K16225 probable WRKY transcription factor 52 (A) |