Names & Information
Knowledge of Bnascaffold1888G0000300WE:
| Gene Name | Bnascaffold1888G0000300WE |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | PREDICTED: uncharacterized protein LOC103855905 [Brassica rapa] |
| Best Hit (SwissProt) | Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV=1 |
| NT seq | Len:2775 nt ATGGATGCATTGAACTCTCCTATTGTTAGGGATAATGAAGCCGACATGATCAAGAAAATCGCCACTGATACTTCGAACAT GCTGAATAATTTCACACCATCAAATGATTTCGATGGTTTAGTTGGGATGGGAGCTCATTGGGAAAATTTGAAATCAATCT TATGCCTAGGCTCAGATGAGGTGAGGATGATTGGGATTTGGGGTCCTCCTGGGATTGGGAAGACCACAATCGCTAGAGTC GCATTCAACCAACTCTCCAACAGTTTTCAACTGAGTGTCTTTATGGATGATCTCAAAGCAAACTCTTCAAGACTGTGTTC CGATGACTACAGCGTAAAGTTGCAATTACAGCAACAGTTTATGTCTCAAATAACCGATCATAAGGATATGGTTGTATCTC ATTTCGGTGTTGTGTCAAATAGGTTGAGGGACAAGAAAGTTCTTGTTGTTCTTGATGGCGTGAACCGGTCAGTACAACTA GATGCGATGGCGAAAGAGACTTGGTGGTTTGGTCCCGGTAGTCGGATTATAATCACAACACAAGATCAGAAACTTTTTAG AGCACATGGGATCAACCATATTTACGAAGTGAATCTTCCAACAAATGATGAGGCTCTCCAAATCTTTTGTACGTATTGTT TTGGTCAAAAGTTCCCTAAATATGGTTTTGAGGAGCTTGCTCGAGAAGTTACAAGTCTTTCTGGTGAACTCCCATTGGGG CTAAGGGTTATGGGTTCCTACCTTCGGGGAATGTCCAAGGAAGACTGGACAAATTCACTACCAAGATTAAGAGATAGCCT TGACACTGATATTCAAAGCATTTTGAAATTCAGTTATGATGCCTTAGACGATGAAGATAAAGATTTGTTTCTTCATATAG CCTGCTTCTTTAGCTCTGAGCAGATTCACAAAATGGAAGAGCATCTTGCAAAGAGGTTCTTGTATGTGAGGCAAAGACTT AAAGTCTTAGCTGAGAAATCTCTCATATCTATTGACTCAGGACGTATAAGGATGCATAGTTTGCTAGAAAAACTAGGTAG AGAAATTGGTAGTAAAAGTGTCATAGGCATAAAGTTCGAATACTATAGAATCAGGGAAGAAATAGATATAAGTGAGAAAG CATTTGAAGGAATGTCAAATCTCCAATTCTTAAAAGTTTGTGGTTTTACCGATGCACTGCAAATAACTGGAGGTCTGAAC TATCTGTCTCATAAACTTCGATTACTAGAGTGGAGACATTTTCCAATGACATGTTTACCTTGCACTGTAAACTTGGAGTT CCTTGTCGAACTAGTCATGCCTTACAGCAAGCTTGAGAAGTTGTGGGAAGGATGTAAACCGCTTCGGTGTCTAAAGTGGA TGGATTTGGGTTATTCTGTAAACTTGAAGGAGCTTCCGGATCTCTCAACTGCCACTAACCTTGAGAAATTTCTTGTGGAG TTTCCCTCCTTTATTGGGAATGCCGTTAATCTCCAAGAATTGGATCTTAGTAGTTTCCCAAATCTGTTGGAGCTCCCTTC TTATGTTGGGAATGCCACCAACTTGGAGTACTTGGATCTTCGTAATTGCTTAAATATGGTGGAACTTCCTCTCTCTCTTG GAAACCTTAAGAAGTTGAAAAGGCTGAGATTAAAAGGATGCAGTAAGCTAGAGGTTCTTCCCACCAACATCAACTTGGAA TATTTGAATGAACTTGATATCGCTGGATGCTCAAGTCTTGATCTCGGGGATTTCTCCACTATCGGAAATCTCCGAGAATT GAATATCAGTAGTCTACCACAATTGTTGGAGGTCCCTTCCTTTATTGGGAATGCCACTAATCTAGAGAACTTGGTCCTTA GTAGTTGCTCAAAACTGGTGGAACTTCCTCTTTTCATTGGGAACCTTCAGAAGTTGCGGTGGCTGAGATTAGAAGGATGC ATTAGGCTAGAGGTCCTTCCCACCAACATCAACTTGGAATCTTTGCTTGAACTTAATCTCAGTGATTGCTCCATGTTGAA AAGTTTTCCCCAGATCTCCGAAAAGCTCAACCTCAGAGGAACTGCAATAGAACAAGTGCCTCCCTCGATCAGGTCATGGC CTCATCTTAAAGAGTTGCACATGTCATACTTTGAAAACCTCAAGGAATTCCCTCATGCTCTCGAAAGAATTACAAGCCTT TCCTTGACCGACACAGAGATACAAGAGGTTCCTCCATTGGTCAAGCAAATCTCTCGTCTGAATAGATTCTTCCTCAGTGG ATGCCGAAAGTTGGTAACACTCCCGCCGATTTCGGAGTCCACTCATTCTATATATGCAAATGACTGTGACTCCCTGGAGA TACTAGAGTGTTCCTTTTCCGATCAAATCCGTAGGCTCACCTTCGCCAACTGCTTCAAACTGAATCAAGAGGCGAGAGAC CTCATCATCCAGGCTAGTAGTGAACATGCAGTCTTACCAGGTGGACAAGTGCCTCCATACTTCACTCACCGAGCTACTGG TGGAGGTCCATTGACTATCAAATTGAATCAAAATCCTCTTCCAGAATCCATGACATTTAAAGCTTGCATCTTGCTGCTTA ATAAAGGTGACCATGAAGCTTGCTCTAAAGAGAAATCAAGGGGAGTGGATGTTGTAAATAATAATATCATATTTGGATTA TATCCGGCTTTAGCGGAGCATCTGTACACATTCCGTATCAACTTAGAAGTCACTTCCAGGAAGCTTCTCTTTGAGTTCAA GTTGAGCGATGATGACGATTGGAAGATAGGAGAATGCGGGATAGTCCAACAATAG |
| AA seq | Len:925 aa MDALNSPIVRDNEADMIKKIATDTSNMLNNFTPSNDFDGLVGMGAHWENLKSILCLGSDEVRMIGIWGPPGIGKTTIARV AFNQLSNSFQLSVFMDDLKANSSRLCSDDYSVKLQLQQQFMSQITDHKDMVVSHFGVVSNRLRDKKVLVVLDGVNRSVQL DAMAKETWWFGPGSRIIITTQDQKLFRAHGINHIYEVNLPTNDEALQIFCTYCFGQKFPKYGFEELAREVTSLSGELPLG LRVMGSYLRGMSKEDWTNSLPRLRDSLDTDIQSILKFSYDALDDEDKDLFLHIACFFSSEQIHKMEEHLAKRFLYVRQRL KVLAEKSLISIDSGRIRMHSLLEKLGREIGSKSVIGIKFEYYRIREEIDISEKAFEGMSNLQFLKVCGFTDALQITGGLN YLSHKLRLLEWRHFPMTCLPCTVNLEFLVELVMPYSKLEKLWEGCKPLRCLKWMDLGYSVNLKELPDLSTATNLEKFLVE FPSFIGNAVNLQELDLSSFPNLLELPSYVGNATNLEYLDLRNCLNMVELPLSLGNLKKLKRLRLKGCSKLEVLPTNINLE YLNELDIAGCSSLDLGDFSTIGNLRELNISSLPQLLEVPSFIGNATNLENLVLSSCSKLVELPLFIGNLQKLRWLRLEGC IRLEVLPTNINLESLLELNLSDCSMLKSFPQISEKLNLRGTAIEQVPPSIRSWPHLKELHMSYFENLKEFPHALERITSL SLTDTEIQEVPPLVKQISRLNRFFLSGCRKLVTLPPISESTHSIYANDCDSLEILECSFSDQIRRLTFANCFKLNQEARD LIIQASSEHAVLPGGQVPPYFTHRATGGGPLTIKLNQNPLPESMTFKACILLLNKGDHEACSKEKSRGVDVVNNNIIFGL YPALAEHLYTFRINLEVTSRKLLFEFKLSDDDDWKIGECGIVQQ* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |