Names & Information
Knowledge of Bnascaffold2042G0000100GG:
| Gene Name | Bnascaffold2042G0000100GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC09g14870D [Brassica napus] |
| Best Hit (SwissProt) | Disease resistance protein RML1B OS=Arabidopsis thaliana GN=RLM1B PE=2 SV=1 |
| NT seq | Len:2853 nt ATGGCGTCTTCTTCTCGGAGCTGGAGATACAACGTCTTCCCGAGCTTCCACGGACCAGATGTTCGTGTAACATTTATGAG TCATTTAAAAAAGCAGTTTCAACACAACGGGATCATAGCGTTCAACGATGAAGGGATTGAGAGAAGCAAACTGATCGGTA CTGAACTCATACGGGCGATAAGAGGGTCAAGAATCTCAATCGTGGTGCTCTCGGAGAACTATGGTTCTTCAAGTTGGTGT TTGAATGAGCTGGTGGAGATTTTGAAGTGTCAAGAATCTGTGGGACAAATAGTGATGACGGTTTTCTACAAAGTGGATCC ATGTGATGTGAGGAAACAGATGGGAGAGTTTGGTAAGACTTTCAAGGAAACTTGCGAAGGGAAAACAGAGACCCAGGTGC ATAAATGGATTCACGCTTTGACCCATGTCGCCAATATAGCCGGAGAACATTCTGTGAACTGGAACAATGAAGGAAAAATG ATTGAGAAGATTGCCTTAAATGTTTCAGACAATCTAAATGCTACACTATCTAGGGATTTTGATGGGATGGTAGGACTTGA AGGTCATTTGGGGAAGATTCAATCTTTGTTAATTTTAGAAAATGATGAACCTATGACCTTAGGAATCTCTGGTCCTGCGG GTATTGGTAAAACTACCATTGCAAGAGCTTTATACAACCAACTCTCTCCTGATTTTCCGCTTAGATATTTCATGGAAAAT GTTGGAGGAAGTTATAGGAATATTGGTTGTGATAGTCTTGATCAGCTAGATGCTCTAGCTAAAGATATATATCATTTTGG TTCCGGAAGTAGGATTATTGTGACTACGAAAGATCAAGAGCTTTTGGAAAGATATGGCATTACCAATACATACCATGTGG GTTTTCCATCTAATGGAGAAGCTCTTGAGATCTTCTGTAGATATGCTTTTAGAAGAAACTCTCCAAAATATGGTTTTGAA AAGCTGGCAATAAGAGTAACAGAGCTTTGCGGTAATCTTCCGTTAGGTCTACGTGTTGTGGGCTCATCTTTAGGTGGGAA AAGTGGGGATGAATGGGAAGTTATTATCCATAGGCTAGAAACTAGTCTTGATGAAGATCTTGAGAGAGTATTAAGAGTCG GATATGAGACTTTACATGAGAAAGATCAAGCTCTGTTTCTTCACATTGCTATATTTTTCAACAACAAAGACCAAGATTAC GTAAAATCCATGCTCCATGACTGTAATTTGAATGTTGAACATGGGTTGAGAAACCTAGTCAATAGATCTCTCATAGACAT ATCTACCAATGGAGAAATAGTGATGCACAACTTACTACAACAAATGGCTAGACAAGTCATTCAAAGACAAGAACCTTGGA AACGCCGCATTTTAATTGATCCTCATGAGATTTGTGATATTCTTGAATATGAGACAGGGACTAGAACAGTGTGTGGCATA TATTTCGATACATCAGAAATAGGCGAAGTGTTTGTAAGCAAGGGAGCTTTAAAAAGAATGAGTAACCTTCAGTTCCTGAC AGTCCACAAAAGAAAACACTGTGAAAAAGACATAGTGTGCATACCTCAGGACTTGGAGTTTCCACCTCGTCTTAAGTTAC TACATTGGGAGGTGTACCCAAGAAAGAGTCTCCCTATGAAATTTCATCTCGAAAATCTTGTCGAACTCCATATGCGCGAT AGCCAGCTCGAGAAGCTCTGGGAAGGATCTCAGCCCCTCACAAATCTCAAGAAGATGGATTTGGCAATGTCGTGTCATTT AAAAGAACTCCCAGATCTTTCAAATGCAACAAATCTCGAGAGACTAAATCTGAATGACTGCGAGAGTCTGGTAGAGATTC CATCCTCTTTTTCAAATCTTCACAAGCTAAAAGCGTTGAGCATGTTTGGCTGCACAAAGCTAGAAGTCATTCCAGCTCAC ATGAACTTGGCATCTCTTGAGTCGGTTGATATGACTGCATGCCAAAGATTGAGAAACTTTCCAGACATCTCTAGGAACGT CTCAAAGTTCTCTATCTCAGTCGAGGAACTAGACCAAGTGCCTGAGTCTATCAGGCTTTGGTCTCGTCTTCATGTTCTCA CCATAACCAGCAAAGGAAAACTAAAGTCCTTAACACATCTTCCCCAAAGTGTAAGGCATCTACACCTAAGCTGCATTGGT GAGCAGAGGATTCCATATTTCAAGAAAAGTCTCCAGCGGGTAGAACTTTATCTAAACAGCTGCAGAAGTTCACTAGTTAG GGGAAATTGTGAACTCAAGGAGGGACTTACTTGTCCTTATGACACTCCATACACGCAACTCAATTACACGAACTGCTTCA AACTGGACCGAGAAGCACGGACAGCAATTATAACAAAACATTTTGCTGAAGGCTGGGCTTGTTTACCTGGAGGAGAAGTG CCTGTAGAGTTCGATCACCGAGCCAAAGGAAATCGTGTGACCATACATCCCATGAGTAACATGTCTCTCACCATTTTCAA GGTTTGTGTGGTGATTTCTCCTAACCAGCAAACCAGAGAATCGGAACAACTAGCGTGTCGGCGTATAAGCAAAGGCATTG AGGAGATCAGTGTTTATGCTATTCCTAGGATTCAAAGAAAACATTTATTTCTATTTCCTTCATACTTATTGCAAGAAGCT ACTGGCAGAGAGGTTGTGTTTGAATTCAGCGGTGGATTCGAGATTGTTGAATGCGGTGTCCAAATTTGGAAGGATGAATC AGAAAGAAACCAAAGTGAGGAAGAAGATGTCAGCAATAACCAGCAGGACAAATATAACATCAGCAAAGCTTGGGAGGAAG AAGAAGCTGAGGAGTATGTGAATCTGAATCCAGCAAAGCGTACAAAGAGATGA |
| AA seq | Len:951 aa MASSSRSWRYNVFPSFHGPDVRVTFMSHLKKQFQHNGIIAFNDEGIERSKLIGTELIRAIRGSRISIVVLSENYGSSSWC LNELVEILKCQESVGQIVMTVFYKVDPCDVRKQMGEFGKTFKETCEGKTETQVHKWIHALTHVANIAGEHSVNWNNEGKM IEKIALNVSDNLNATLSRDFDGMVGLEGHLGKIQSLLILENDEPMTLGISGPAGIGKTTIARALYNQLSPDFPLRYFMEN VGGSYRNIGCDSLDQLDALAKDIYHFGSGSRIIVTTKDQELLERYGITNTYHVGFPSNGEALEIFCRYAFRRNSPKYGFE KLAIRVTELCGNLPLGLRVVGSSLGGKSGDEWEVIIHRLETSLDEDLERVLRVGYETLHEKDQALFLHIAIFFNNKDQDY VKSMLHDCNLNVEHGLRNLVNRSLIDISTNGEIVMHNLLQQMARQVIQRQEPWKRRILIDPHEICDILEYETGTRTVCGI YFDTSEIGEVFVSKGALKRMSNLQFLTVHKRKHCEKDIVCIPQDLEFPPRLKLLHWEVYPRKSLPMKFHLENLVELHMRD SQLEKLWEGSQPLTNLKKMDLAMSCHLKELPDLSNATNLERLNLNDCESLVEIPSSFSNLHKLKALSMFGCTKLEVIPAH MNLASLESVDMTACQRLRNFPDISRNVSKFSISVEELDQVPESIRLWSRLHVLTITSKGKLKSLTHLPQSVRHLHLSCIG EQRIPYFKKSLQRVELYLNSCRSSLVRGNCELKEGLTCPYDTPYTQLNYTNCFKLDREARTAIITKHFAEGWACLPGGEV PVEFDHRAKGNRVTIHPMSNMSLTIFKVCVVISPNQQTRESEQLACRRISKGIEEISVYAIPRIQRKHLFLFPSYLLQEA TGREVVFEFSGGFEIVECGVQIWKDESERNQSEEEDVSNNQQDKYNISKAWEEEEAEEYVNLNPAKRTKR* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |