Names & Information
Knowledge of Bnascaffold2680G0000100GG:
| Gene Name | Bnascaffold2680G0000100GG |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | disease resistance protein [Brassica rapa subsp. pekinensis] |
| Best Hit (SwissProt) | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 |
| NT seq | Len:2516 nt ATGGAGGCAAGCTTTGAAGGATGTCGCGGTGACAGTGAAGCTGATTTGATCAACAAAGTTGCCTCAGATGTCACGGCTGT GTTGGGTTTTACACCATCAAAAGACTTTGATAACTTTGTTGGCATCGAACGTCGAATCATAGATATAAAATCGAAGTTCA TCCTACAATCGGAACAAGTTAAGATGATTGTGCTTGTGGGTCCTGCCGGGATTGGGAAGACGACCACTGCCAGAGTTTTA TACAACCAACTCTCACCTGGTTTTCCATTCAGCACGTTTTTGGAGAATATCAGAGGAAATTATGAGAAGCCTTGTGGTAA CGACTATTCGTTGAAGTTGCGTTTTCATCAAAATTTGTTGTCTCAACTTCTCAACCAAAAGGATATTGTGGTTGGTCACT TAGGAGTGGCTCAAAATATGCTGAGTGACAAAAAGGTGTTGGCTGTTCTTGACGAAGTGGATAACTTGTGGCAACTCGAG GAAATGGCAAAGCAGCGCGAGTGGGTTGGTCCGGGAAGTATTATTATCATTACAACGGAAGATGTAAAACTTCTCAAGCA ACTCAGACTGGGGATCGATCATATCTACAAGATGGAATTTCCAACTAAAGATGAGTCTCTTGAGATCTTTTGCCATTATG CTTTCGATCAGAACTCTCCATATGATGGTTTTGAAGATCTTGCTAGGGAAGTTACTTGGCTTGCTGGTAATCTTCCTCTA GGCCTGAGAGTCATGGGATCGTATCTACGAGGAATGTCCATGGACTACTGGATAAAGGCACTACCAAGGCTCAGTGGATA CGTAAAGATGCATAGTTTACTGCAACAATTGGGTAGAGAAATTGTCAAGAAACAGTCTTTGAAAGAGCGACAGTTCTTGA TGGATGCCAAGGATATTTCTGATTTACTTGAAGAAAATACTGTTAATGGAGAAGTTCTGGGAATAATGTTAGATGCTTCA AATCAGAGCGAGGAAGTCCATATAAGTAAAAGCGCTTTCGAAGGGATGAATAGTCTCCAGTTTCTAACAGTCGACTATGA TAAATTATGCATACCCGAAGGCCTCAACTGTCTTCCCAACAAACTCAGACTAATACATTGGAACTACTGTCCATTGAGGT TTTGGCCTTCCAAGTTCTCTTTCAAGTTTCTCGTCGAACTAATCATGCCAAATAGCAAGTTTGAGAAGCTTTGGGAGGGA ATCCAACCTCTCCAATGCCTCAAGCTGATGGATCTGAAAGAATCTTGTTATCTGAAAGAGATTCCAGATCTCTCAAATGC AACGAGTCTTGAGGAATTAGTTCTCTGTGGCTGCACAAGTTTGTTAGAGATCACAAGCTCTATTGGCAATGCCACCAAGC TTAAAAAATGCAATCTTTTTGGGTGCTGGCTTTTGAAGGAGCTCCCCTCTTCTATCAGTAGGTTAATCAATCTCAAGGAA TTAGACCTCTGTGGTTGCCAGACTTTAAAAGCAGTCAGTGTTTTCTCGAGTTTGGAAAAACTCAGTGGTTGTTCGAGTTT GAAAGAACTCAGGCTGACGGGTACTGAGATAGAGGAAGTGCCATTATCAATGAGCACTTGGTCTTGTCTTTATAAATTGG ATGTGTCAGACTGTAGAAACCTCAAGGAGTTCCCTAATGTTCCAGACAGCATTGTAGAGTTGGTGTTGTGCAAGACAAGG ATAGAAGAGGTTCCTTCATGGATCGGGAATCTGTTTCGTCTCCGTAAACTAATTATGTATGGATGCAAGAAGCTGAAAAC TATATCTCCAAACATTTCCAAGTTGGATAATCTTGAGTTTCTTGGTCTACGTAAAGATGGCGAATATGAGTATGATGATG AATTTGTCGGAGAATCTGGTTTAAAATTATTTGAAGCAGTTATTAAGTGGGGACCTGACTTGAATCACAGTTGGAAATTA CGATCAGACTTCAGAGTTCACCATATTTTACCGATATGTCTACCCAAGAAGGCTTTTACATCTCCAGTGTCATTATGTTT ACGTTGTGTTGGTTTGAAGACTATTCCAGATTGCATCGGACGTCTCTCTGGACTAAGTAAGCTTGTCATCACAATGTGCA GAAAGCTCCGAGCACTTCCACAGCTTCCAGATTCCCTTATATCTATTAATGCACACGGTTGTGAATCCTTGGAGAGTATA GACTCCTCCTCTTTTCAAAATCCAGATATTTGCCTAAACTTTTATGGCTGTTTCTACCTGAATCAAAAAGCCAGAAAGAT CATCGAGACATCAGCTTGCAAATATGCGCTCTTACCTGGTAGAAAAGTGCCTGCACATTTCACTCATCGAGCTACTTCAG ATTCCCTAACGATCAATTTGACTCCAACACCTCTGCCTTCATCCATCAGATTCAAAGCTTGCATCTTGCTGCCAAGACAC TCTCGTTTGGGTACTGTGTCTTGTAGTGTCAGCGGTAAACAGAATGACCTCACTGTGGAATATGGATCAAACCAGCTCCA TCATATGCCATATATCAATGAACCTGAAGTCCATCT |
| AA seq | Len:838 aa MEASFEGCRGDSEADLINKVASDVTAVLGFTPSKDFDNFVGIERRIIDIKSKFILQSEQVKMIVLVGPAGIGKTTTARVL YNQLSPGFPFSTFLENIRGNYEKPCGNDYSLKLRFHQNLLSQLLNQKDIVVGHLGVAQNMLSDKKVLAVLDEVDNLWQLE EMAKQREWVGPGSIIIITTEDVKLLKQLRLGIDHIYKMEFPTKDESLEIFCHYAFDQNSPYDGFEDLAREVTWLAGNLPL GLRVMGSYLRGMSMDYWIKALPRLSGYVKMHSLLQQLGREIVKKQSLKERQFLMDAKDISDLLEENTVNGEVLGIMLDAS NQSEEVHISKSAFEGMNSLQFLTVDYDKLCIPEGLNCLPNKLRLIHWNYCPLRFWPSKFSFKFLVELIMPNSKFEKLWEG IQPLQCLKLMDLKESCYLKEIPDLSNATSLEELVLCGCTSLLEITSSIGNATKLKKCNLFGCWLLKELPSSISRLINLKE LDLCGCQTLKAVSVFSSLEKLSGCSSLKELRLTGTEIEEVPLSMSTWSCLYKLDVSDCRNLKEFPNVPDSIVELVLCKTR IEEVPSWIGNLFRLRKLIMYGCKKLKTISPNISKLDNLEFLGLRKDGEYEYDDEFVGESGLKLFEAVIKWGPDLNHSWKL RSDFRVHHILPICLPKKAFTSPVSLCLRCVGLKTIPDCIGRLSGLSKLVITMCRKLRALPQLPDSLISINAHGCESLESI DSSSFQNPDICLNFYGCFYLNQKARKIIETSACKYALLPGRKVPAHFTHRATSDSLTINLTPTPLPSSIRFKACILLPRH SRLGTVSCSVSGKQNDLTVEYGSNQLHHMPYINEPEVH |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0006952 |
| Pfam | Leucine Rich Repeat |
| KEGG | disease resistance protein TAO1-like; K19613 leucine-rich repeat protein SHOC2 (A) |