Names & Information
Knowledge of Bnascaffold2820G0000100ZS:
| Gene Name | Bnascaffold2820G0000100ZS |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaA01g10040D [Brassica napus] |
| Best Hit (SwissProt) | Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 |
| NT seq | Len:3440 nt GAGGCGGCGATGGCGAATTGGATCGGATTTACAAGTCCCTTGGCGTTTCTGGTCCCGACGATTTGGCGATTTCTTTTGAC GCGTGGGAGGCTTGCAAGACGCGTTCCTCCTCTGGTATTGTTAATAGGTTTCAGCCTCAGGCCGATGTTTTGAGTAGTGG TGTTGATTCACTGGATCGGGACGATACTGGTGGTGTGGGCAGGTTCTTCAAGGAGCATGCGAGTGAAAAAGCTAGTGAGA AAGAGCATGGCGAGATGAATCTCAAGGAAGTTGAAACTCCTTTCCAGCCAAAACTATCTGAGCATTGCGTTACGGGGTCT GACCCTATATTAGTTATTTATTGTGGTGACAACCAGGTCTCCGAGGAGATATACCTCATCAGCTACATCTTCAACGAGTT GTGTGCCCGTGGCTTTGCCCCTTTGAGATATGATATGAAAAAGAGCACTGTGACTGAAAATCAGAAACTGCTACACATAT CACGGGTTGGTATTATCATTTTCTCGATGAACTTTGCTCATTCCAGAGAGTGTCTGGATGGATTCGTGGCAGTCATGGAT CATTTGAAAGCTAACGAGCTTGTGCTTATTCCTGTGTTTTTTAAAGTAAGTGTTTCAGACGTCAGGGGCCAAAGTGGCTC TTTTGGAAAAGCATTCACACGACTTGGGGATTCAGTCATGGCCTCCCAAGTTCTGAAATGGAGGGCGGCTATGATCAAAT TAGCTTCCATCATTGGATATGCGTATAAGAAGGGGGATGAGGTTATTCTGGCCAAGAATATTGTCAGAGATGTCTGTTTG CCGCTCAGTTCCGAAACCAACATGAAGCTAAGAGGAACGAGGCTTTCATTAAAAAGTATATTGTCTCTGCTGAATCGTTC TCAACCCTCATCTTCACAGATTGTTGGACTTTGGGGTATGGCTGGCATAGGGAAGACTACCATCACGAGAGACTTTTTCA GATCACAAGCTGAGCAATATGACGTGTGCTACTTTCTGCCTGACTTTCATCTATTGTGTCAAACAAAAGGGCTGAGTTAT TTGCGTGATGATTTCTTCTCGAAAATATTTGGCGCAGAGAAAGTTTTCGTAGACGCATGTGATACAAAACCAAGCGTCAC AAGGGATAGGTTCCTCGGTAAAAAGGTTCTGATTGTTCTTGATGGTGTGAGTAGTGCCAAAGATGCAGAAGTTTTGGTTG GAGGGTTTGGCTGGTTTTCTGGTGGACATACAATCATCTTAACATCTAGGAATAGGCAAGTTCTTGTACAGTGTAACGCC AAAGTGATTTACGAGATCGAGAAGCTACCCAAGCTTGAGTCTCTTCACCTTTGTTGCAAGTTTGCCAGTAAAGAAAATTG TAAAGGAAGAATGTCGTTGACATCGGAGCTTGTGGACTACGCTAGTGGCAATCCTTTGGCTCTGCGAGTCTTAGGTTTGT CTATTCAAAATCAATCTATGAAAGATCAGAAACAACATCTGAGAAGACTGCGTCAACATCCTCCAGTCAAAATTCTGAAT GCATTTAAAATAAGTTTTAATGGACGAGATGATGACGAGAAGAGCATATTTTTGGACCTGGCTTGTTTTTTCAGAGGGGA GGATAGAGATCGTGTGGTGAAAATCCTTGATGGTTGCGGTTTTTCTACAGATTTAGGAATCTATGGTCTCATTGATGAGT CTCTCATCAGCCTTGTAGATAACAAGATAGAAATGCCCAACATTTTCCAAGACGCGGGTCGATTTGTTGTTTGTCAAGAA CACGAAGAGCCAGGCAACCGTAGCAGATTGTGGGATTCTAGTGACATTGCTGGTGTCCTGAAAAATAATACAGGAACAGA AGCAACTGAGGGAATATTTCTGGATGCATCTGGCTTGACATTTGATTTGAGCTCTACTGCATTTGAGAGGATGTATAGAC TTAGATTGCTCAAGATCCACTGTCCAACTTCTGTAAATCATTGCAAGGTTTGTCTACCTGAAGGCCTCCACTCTTTGCCT GATGAGCTACGCCTACTCCACTGGGAAAAATATCCTCTTGGATCGTTACCTCGGAACTTCAACCCTAAAAATCTTGTAGA ACTGAACATGCCATATAGCAACTTGACAAAAGTATGGAAAGGAACAAAGAATCTTGAGAAGCTAAAGAGGATCATTCTGA GTCACTCTCAACAGTTGACTAAATTCCCAAGGCTTTCAAAGGCCAGGAACCTTGAGCATATTGATCTCGAAGGATGTACG AGTCTGGTTAAGGTTAACTCATCTATTCTTCATCATCACAAGCTTACTTTCTTGAGTCTGAGAAACTGTTCTCGTTTGCG AGTTATGCCTACCACGGTTCATCTAAAATCTCTTGAGGTTCTTAATCTATCTGGCTGCTCAGAGCTCGAGAACCTTCAGG ATTTCTCATTAAACCTGAAAGAAATATATCTAGCTGGGGCTGCTATTAGAGAAATTCCGTCGTCGATTGGGGATCTCACT AGACTTGTTACATTAGATCTGGAGAACTGTGAAAGTCTCCAGCACCTGCCACCGGGGATAAGTAACTTGAAAGCCATGAT GACACTTAAGCTGTCTGGCTGTTCAAATCTGAAGAGCCTTCCAGTTCTTGATGCATTATTTCTCCAAGATTCACAACGTT CTAACACAAGGATAACCATGGAAGAATCTGTGTCCATAAACCTTCACTCTGCTATTCAAGAATCAAGGTTAGATGGCTCT AAAACCCTTCTGAAGTTAGATAATTTGCAACTGAGATCAGATATTCACGGTTCTTTTTTCAGCAGAGAAGCATTCTTACC AGCATTTGAATATCTATCAAACAACGGAATACCACAAGAAAGCTGGACACGGGTCACTGTTATTCCGTTCCCCTCACCCA TTTTACACTCATTGGCGTCTAGGCTATATGCGCTAGTATCGTTGTTCCTTTGTAATGCTTACCTGGTGGATATACCTGAA GATATATGTTGGCTTGCTTCGGTGATGAGACTAGATCTTGGTGGAAACTCTTTCAGCCAGATTCCTAAAAGCATCAAGGA GTTTCGTAAACTACATAGCCTTAATTTGCGCCATTGCAAAAACCTCAAATCGCTACCTGAGCTTCCTAGAAGTCTAGTAA CCTTGAACGCCCATGGCTGCGTGTCTCTCAAATCATTTCCAACGAGTTTCGAGCAGTTCCCAAGGCACTTCACATTCAGT AATTGCTTTAATCTGTCCCCAAAAGTGGTTAGAGAATATATAGGAAAAGCTCTTGATAGCGTTAAAGGCATGGCCAAGGG GATTCTGCAGGCTTCACTGGAACAGGAACACATCAACGATCCTGCATTCAACATCTGTATACCTGCCTCTGCAGGCCAGC AATCCTCGGTTAATTTTCAAGCTGGTTCTTCTGTAAGGATACAGCTAGCTCCTGGCATGTTAAAGACTCTCTCAGGCTTT |
| AA seq | Len:1146 aa EAAMANWIGFTSPLAFLVPTIWRFLLTRGRLARRVPPLVLLIGFSLRPMF*VVVLIHWIGTILVVWAGSSRSMRVKKLVR KSMAR*ISRKLKLLSSQNYLSIALRGLTLY*LFIVVTTRSPRRYTSSATSSTSCVPVALPL*DMI*KRAL*LKIRNCYTY HGLVLSFSR*TLLIPESVWMDSWQSWII*KLTSLCLFLCFLK*VFQTSGAKVALLEKHSHDLGIQSWPPKF*NGGRL*SN *LPSLDMRIRRGMRLFWPRILSEMSVCRSVPKPT*S*EERGFH*KVYCLC*IVLNPHLHRLLDFGVWLA*GRLPSRETFS DHKLSNMTCATFCLTFIYCVKQKG*VICVMISSRKYLAQRKFS*THVIQNQASQGIGSSVKRF*LFLMV*VVPKMQKFWL EGLAGFLVDIQSS*HLGIGKFLYSVTPK*FTRSRSYPSLSLFTFVASLPVKKIVKEECR*HRSLWTTLVAILWLCES*VC LFKINL*KIRNNI*EDCVNILQSKF*MHLK*VLMDEMMTRRAYFWTWLVFSEGRIEIVW*KSLMVAVFLQI*ESMVSLMS LSSAL*ITR*KCPTFSKTRVDLLFVKNTKSQATVADCGILVTLLVS*KIIQEQKQLREYFWMHLA*HLI*ALLHLRGCID LDCSRSTVQLL*IIARFVYLKASTLCLMSYAYSTGKNILLDRYLGTSTLKIL*N*TCHIAT*QKYGKEQRILRS*RGSF* VTLNS*LNSQGFQRPGTLSILISKDVRVWLRLTHLFFIITSLLS*V*ETVLVCELCLPRFI*NLLRFLIYLAAQSSRTFR ISH*T*KKYI*LGLLLEKFRRRLGISLDLLH*IWRTVKVSSTCHRG*VT*KP**HLSCLAVQI*RAFQFLMHYFSKIHNV LTQG*PWKNLCP*TFTLLFKNQG*MALKPF*S*IICN*DQIFTVLFSAEKHSYQHLNIYQTTEYHKKAGHGSLLFRSPHP FYTHWRLGYMR*YRCSFVMLTWWIYLKIYVGLLR**D*ILVETLSARFLKASRSFVNYIALICAIAKTSNRYLSFLEV** P*TPMAACLSNHFQRVSSSSQGTSHSVIALICPQKWLENI*EKLLIALKAWPRGFCRLHWNRNTSTILHSTSVYLPLQAS NPRLIFKLVLL*GYS*LLAC*RLSQA |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0005515 |
| Pfam | Leucine Rich Repeat |
| KEGG | hypothetical protein; K19613 leucine-rich repeat protein SHOC2 (A) |