Names & Information
Knowledge of Bnascaffold910G0000400WE:
| Gene Name | Bnascaffold910G0000400WE |
|---|---|
| Gene Location | |
| Gene Structure | |
| Protein Name | |
| Alternative splicing | |
| Homology | |
| Best Hit (NR) | BnaC06g03340D [Brassica napus] |
| Best Hit (SwissProt) | Probable disease resistance protein At1g15890 OS=Arabidopsis thaliana GN=At1g15890 PE=3 SV=2 |
| NT seq | Len:2601 nt ATGGGAGGCTGTGTATCAGTAGATATACCATGTGATCAAGTGGTGAGTCAAACCCACAGATGCTTATTTGGGGATGGAAA TCACATCCACATGATGAAGGCTAATCTCGAGGCTCTGGATACAGCTACGCGAGAACTTAGAGAAAGGCGAGTTGATCTGT CAAGAAGAGTTTCCCTAGAAGAAGATAAAGGTTTGGAGCGGCTTGCTAAAGTAGAAGGATGGTTGTCAAGGGCAGAAAGT ATTGACTCTGAGGTCAGTGATCTGCTTAGGGAGGAACCAACTGAAACTAAGAGATTGTGTCTTTTTGGATATTGTTCAAA AAATTGCATATCAAGCTGTAAGTATGGTAAAATGGTATCGAAGAAGTTGGAAGAAGTTAAAGAGCTTCTATCTAAAGAAG TTTTTGAAGAATTGGCCGAGAAAAGGCCTGCATCAAAGGTGGTGAAGAAAGATATCCAAACAACAATAGGTTTGGATTCA ATGGTCGGAAAGGCATGGGACAGCATCATGAAACCTGAAGGAAGAACTTTAGGTATTTATGGCATGGGGGGAGTTGGGAA AACAACCCTCTTAGCTCGTATCAACAACAAATTCGACAAAGAGGTGAATGAATTTGATGTTGTGATATGGGTTGTGGTCT CTAAAGATTTGCAATACAAGGTGATTCAGGATCAGATTCTAAGAAGATTACGTGCTGACCAAGAATTGGAAAAGGAAACA GAAGAGAAGAAAGCATCTTTCATAGACAATATCCTAAGAAGAAAGAAATTCATACTGCTATTAGATGATCTGTGGAGCGC GGTAGATTTGAACAAGATTGGAGTTCCACGTCCAACTCAAGAAAATGGATCGAAGATAGTTTTCACCACTCGTTCAAAGA AAGTTTGCAGAGACATGGAAGCTGACGATGAGCTGAAAATGGATTGTTTGTCAACGAATGAAGCGTGGGAACTGTTTCAA AATGTAGTTGGAGAAGCCCCATTAAAGAAGGATTCGGAAATTCTCGCACTTGCAAAAAGAATTTCTGAAAAATGTCATGG CTTGCCACTTGCACTCAATGTGATTGGCAAAGCCATGTCATGTAAAGAGGATGTACATGAATGGCGTCATGCAAATGATA TTCTCAAAAGTTCCAGCCGCGAGTTTCCAGGTATGGAAGAAAATATTCTTTCAGTTTTGAAGTTCAGCTATGATGGTTTA GAGGATGAAAAGGTGAAATCATGCTTCCTATACTGTTCGTTGTTCCCGGAAGATTATGAAATAAAGAAGGAGGAGTTGAT CGAATATTGGATCAATGAAGGATTTATAAATGGAAAGAGAGATGAAGATGGAAGTAACAACAAAGGTCATGTTATTATTG GTTCGTTAGTTCGTGCGCATCTATTGACGGAATCAGAAACTACTGTGAAAATGCATGATGTGTTACGTGAAATGGCTCTT TGGATAGGGTCTACGTCTGGAAAAGAGGAAGAAAAACAGTGCGTCAAATCCGGTGTGAAGCTAAGCTGTATACCAGATGA CATCAACTGGGATAACGACTTGAAGGGTATACCAGGTAAATTCTTTCAGTTTATGCCGTCCCTTATCGTCTTGGATCTTT CGCATAACCGAAGTCTTAGGGACTTGCCGGAAGAAATTTGCAGCTTGACTTCCTTGAAATACCTCAACTTATCATACACA CGTATAAGTTCGTTATCAGTTGGTTTGAAGGGGTTGAGGAAACTAATAAGCCTGGACCTGGAGTTCACCAAGCTTAAAAG CATTGATGGGATAGGAGCAAGCTTACCAAATCTTCAGGTGTTGAAACTATATCGTTCTCGTCATTATATTGATGCAAGAT CAATTGAGGAGCTACAACTTTTAAAGCACTTGAAGATTTTAACAGGAAATGTGACAGATGCTTCAATTTTGGAAAGTATC CAAGGAGTGGAGGGATTGGTGCGTTGTGTTCAACGCCTTCGGATTATCAATATGTCCGCAAAGGATTTAACATTAAACAC GGTAGCTCTGGGCGGTCTTCGAGAACTTGAGATTATAAATTTCAAGATCTCTGAGATAAAGATAGATTGGAAATGCAAAG GGAAAGAAGATCTTCCTTCTCCATACTTCAAGCACCTCTTCAGTATTGTTATACAGGATTTGGAAGGTCCAAAAGAATTG ACCTGGTTATTGTTTGCTCCAAATCTCAAGCATCTTGAGGTGTTACGTTCACCAAGCCTAGAAGAAATAATAAATAAGGA GAAGGGAATGAGTATTAGCAATGTGCATCCTCCTGATATGACGGTTCCCTTTCCGAAGCTAGAATCCCTCACTTTAAGGG GTTTGCCTGAATTAGAGAGAATATGCTCAAGTCCCCAGGCTCTTCCATCCCTGAAAGATATTACTCACTGCCCAAAGCTG TCACTAGAGAGTTTCCAAGACACGAGCAGTAAGAAAACGACAGTGGGTGAGCAATCATCTTCTTCAGTTTCTGCAGCGGT TCAACTTCGTCAGCTTCGAGTATCATGGTGGTCGGCGAAAATTACAATAATAATAATAGAAAAAAAATTGCTATGTAACC TATTAAATAATAATGAGAAAGGAGACACATTTGAATGGTAA |
| AA seq | Len:867 aa MGGCVSVDIPCDQVVSQTHRCLFGDGNHIHMMKANLEALDTATRELRERRVDLSRRVSLEEDKGLERLAKVEGWLSRAES IDSEVSDLLREEPTETKRLCLFGYCSKNCISSCKYGKMVSKKLEEVKELLSKEVFEELAEKRPASKVVKKDIQTTIGLDS MVGKAWDSIMKPEGRTLGIYGMGGVGKTTLLARINNKFDKEVNEFDVVIWVVVSKDLQYKVIQDQILRRLRADQELEKET EEKKASFIDNILRRKKFILLLDDLWSAVDLNKIGVPRPTQENGSKIVFTTRSKKVCRDMEADDELKMDCLSTNEAWELFQ NVVGEAPLKKDSEILALAKRISEKCHGLPLALNVIGKAMSCKEDVHEWRHANDILKSSSREFPGMEENILSVLKFSYDGL EDEKVKSCFLYCSLFPEDYEIKKEELIEYWINEGFINGKRDEDGSNNKGHVIIGSLVRAHLLTESETTVKMHDVLREMAL WIGSTSGKEEEKQCVKSGVKLSCIPDDINWDNDLKGIPGKFFQFMPSLIVLDLSHNRSLRDLPEEICSLTSLKYLNLSYT RISSLSVGLKGLRKLISLDLEFTKLKSIDGIGASLPNLQVLKLYRSRHYIDARSIEELQLLKHLKILTGNVTDASILESI QGVEGLVRCVQRLRIINMSAKDLTLNTVALGGLRELEIINFKISEIKIDWKCKGKEDLPSPYFKHLFSIVIQDLEGPKEL TWLLFAPNLKHLEVLRSPSLEEIINKEKGMSISNVHPPDMTVPFPKLESLTLRGLPELERICSSPQALPSLKDITHCPKL SLESFQDTSSKKTTVGEQSSSSVSAAVQLRQLRVSWWSAKITIIIIEKKLLCNLLNNNEKGDTFEW* |
| Expression(FPKM) | |
| Classification(Core/Distributed) | |
| Function classfication (GO) | GO:0000166 |
| Pfam | Leucine rich repeat |
| KEGG | RGA-1; probable disease resistance protein At1g15890; K13459 disease resistance protein RPS2 (A) |