From Wikipedia ...

Amborella is a monotypic genus of understory shrubs or small trees endemic to the main island, Grande Terre, of New Caledonia. The genus is the only member of the family Amborellaceae and the order Amborellales and contains a single species, Amborella trichopoda. Amborella is of great interest to plant systematists because molecular phylogenetic analyses consistently place it as the sister group of the remaining flowering plants.

Data

We used Amborella_trichopoda.AMTR1.0.37.gff3 and Amborella_trichopoda.AMTR1.0.dna.toplevel.fa from ensembl as the reference genome. The Isoseq data downloaded from NCBI were under project SRP099247. We used TAPIS pipeline to process these raw data.

Summary

From Iso-Seq data, we found 34,733 transcripts, 769 novel genes and 15,039 Alternative Splicing events.

Reference

• https://en.wikipedia.org/wiki/Amborella
• https://plants.ensembl.org/Amborella_trichopoda/Info/Index