Fragaria vesca, commonly called wild strawberry, woodland strawberry, Alpine strawberry, Carpathian Strawberry, European strawberry, or fraisier des bois, is a perennial herbaceous plant in the rose family that grows naturally throughout much of the Northern Hemisphere, and that produces edible fruits.
We used Fragaria_vesca_gene.gff3 and Fragaria_vesca_v4.0.a1.fasta from Genome Database for Rosaceae as the reference genome. The Isoseq data downloaded from NCBI were under project SRP074814. We used TAPIS pipeline to process these raw data.
From Iso-Seq data, we found 34,107 transcripts, 516 novel genes and 25,966 Alternative Splicing events.
- https://en.wikipedia.org/wiki/Fragaria_vesca
- https://www.rosaceae.org/
Type | ExonS | AltD | AltA | IntronR | Other | AltP |
---|---|---|---|---|---|---|
Gene Number | 1,597 | 2,094 | 2,355 | 5,333 | 862 | 1,056 |