Nepenthes rafflesiana (after Stamford Raffles), or Raffles' pitcher-plant,[3] is a species of tropical pitcher plant. It has a very wide distribution covering Borneo, Sumatra, Peninsular Malaysia, and Singapore. Nepenthes rafflesiana is extremely variable, with numerous forms and varieties described. In Borneo alone, there are at least three distinct varieties. The giant form of this species produces enormous pitchers rivalling those of N. rajah in size.
Since there is no available reference genome currently, we adopted Cogent pipeline to assemble a "fake genome" and used SUPPA to analyze Alternative Splicing events from Iso-Seq data (SRP065352). For details, see reference or click the pipeline tab from the navigation bar.
The genome assembled by Cogent included 18,614 sequences, and we found 20,537 transcripts and 284 Alternative Splicing events.
- https://en.wikipedia.org/wiki/Nepenthes_rafflesiana
Type | Skipping Exon (SE) | Alternative 3' Splice Sites (A3) | Alternative 5' Splice Sites (A5) | Retained Intron (RI) | Mutually Exclusive Exons (MX) |
---|---|---|---|---|---|
Gene Number | 3 | 47 | 50 | 156 | 0 |