Salvia miltiorrhiza (simplified Chinese: 丹参), also known as red sage, Chinese sage, tan shen, or danshen, is a perennial plant in the genus Salvia, highly valued for its roots in traditional Chinese medicine.[2] Native to China and Japan, it grows at 90 to 1,200 m (300 to 3,940 ft) elevation, preferring grassy places in forests, hillsides, and along stream banks. The specific epithet miltiorrhiza means "red ochre root".
Since there is no available reference genome currently, we adopted Cogent pipeline to assemble a "fake genome" and used SUPPA to analyze Alternative Splicing events from Iso-Seq data (SRP049543). For details, see reference or click the pipeline tab from the navigation bar.
The genome assembled by Cogent included 4,875 sequences, and we found 6,429 transcripts and 296 Alternative Splicing events.
- https://en.wikipedia.org/wiki/Salvia_miltiorrhiza
Type | Skipping Exon (SE) | Alternative 3' Splice Sites (A3) | Alternative 5' Splice Sites (A5) | Retained Intron (RI) | Mutually Exclusive Exons (MX) |
---|---|---|---|---|---|
Gene Number | 7 | 64 | 40 | 130 | 1 |