PISO

Nepenthes ampullaria

From Wikipedia ...

Nepenthes ampullaria ( Latin: ampulla "flask") is a very distinctive and widespread species of tropical pitcher plant, present in Borneo, the Maluku Islands, New Guinea, Peninsular Malaysia, Singapore, Sumatra, and Thailand. Nepenthes ampullaria, unlike other members of its genus, has evolved away from carnivory and the plants are partly detritivores, collecting and digesting falling leaf litter in their pitchers. In the 1996 book Pitcher-Plants of Borneo, N. ampullaria is given the vernacular name flask-shaped pitcher-plant.[10] This name, along with all others, was dropped from the much-expanded second edition, published in 2008.

Data

Since there is no available reference genome currently, we adopted Cogent pipeline to assemble a "fake genome" and used SUPPA to analyze Alternative Splicing events from Iso-Seq data(SRP065352). For details, see reference or click the pipeline tab from the navigation bar.

Summary

The genome assembled by Cogent included 13,317 sequences, and we found 15,800 transcripts and 256 Alternative Splicing events.

Reference

  • https://en.wikipedia.org/wiki/Nepenthes_ampullaria




Alternative Splicing Gene Statistics


Type Skipping Exon (SE) Alternative 3' Splice Sites (A3) Alternative 5' Splice Sites (A5) Retained Intron (RI) Mutually Exclusive Exons (MX)
Gene Number 2 35 31 106 1

Alternative Splicing Events Statistics





GO Statistics



*Start from 0